hnrnpr (hnrnpr,LOC103029778,LOC105909056)


Basic Information

Item Value
gene id hnrnpr
gene name hnrnpr,LOC103029778,LOC105909056
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 4929177 ~ 4935065 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007239845.3
ctctctgtgtgtctgtgtgtgcgcgtgcctgtgtgtgtgtgtgagagcgcgCGCACGTCTGTCTGTCTCGTGGACAGAGCCCTCAGCAGCTCCCCTCGCTCCGCTCTTCTAACCGCCGCTTCCAGCgcccacagcagcagcagcacggcCGCGGGTTGGAGGAGCCGCCCTCGCAGGAGAACCCACACCAGAACCGAACCGAACGAATGGCTGCTGAAGTGAATGGCAGCTCTGCTCCAGCAAAGGAGGAAGAAGAACCCATGGATGTCTCAGCCGGACACTCAGAGAACTACCAGACGCTCATAGATGCTGGGCTGCCCCAGAAAGTTGCAGAGAGTCTGGACAACATCTTTCAGACTGGTTTGGTGGCTTATGCTGACCTAGATGAGAGGGCAATCGATGCCCTGCGGGAGTTTAATGAAGAAGGAGCGCTGTCTGTACTGCAGCAGTTTAAGGAAAGCGACTTGTCCCATGTGCAGaataaaAGTGCTTTCCTGTGTGGAGTCATGAAAACATACAGACAGAGGGAAAAGCAAGGCAGCAAAGTACAGGAATCCACAAAAGGCCCAGACGAGTCAAAAATTAAGGCACTGCTGGAGAGGACAGGCTATACCCTTGATGTTACTACAGGCCAGAGGAAGTATGGTGGCCCACCACCAGAGGAGGTGTTCTCTGGCACTCAGCCTGGCATCGGCACAGAGGTGTTTGTGGGAAAGATCCCTCGGGACTTATATGAAGACGAGTTGGTTCCACTTTTTGAGAAGGCTGGGCCAATATGGGACCTGAGGTTAATGATGGACCCGCTGTCTGGGCAAAACCGCGGTTATGCGTTTATCACCTTCTGCAGCAAGGAGGCTGCACAGGAAGCTGTGAAACTGTGTGATAATTATGAGATCAGGCCAGGCAAGTATCTGGGTGTCTGCATCTCTGTAGCCAACAACCGCCTGTTTGTCGGCTCAATCCCAAAGAACAAGACCAGGGAGAGCATCCTGGAAGACTTTGGAAAAGTGACAGAGGGTCTGCAGGAAGTGATTCTGTACACGCAGGCTGATGATAAGAAGAAGAATCGGGGGTTCTGTTTCCTGGAGTACGAGGATCATAAGTCGGCAGCTCAGGCCCGTCGGCGGCTCATGAGCGGCAAGGTTAAGGTTTGGGGGAATCCTGTTACCGTTGAGTGGGCTGACCCAGTTGCTGAGCCTGATCCTGAAGTCATGGCCAAGGTGAAAGTGTTGTTTGTTCGTAAACTAGCCACTCCAGTTACAGAGGAattgctggagaagactttctCCCAGTTTGGAAAGCTTGAGCGTGTTAAGAAGCTGAAAGACTATGCTTTCGTGCACTTTGAGGAGCGAGATGCTGCTGTCAAGGCTATGGAGGAGATGAATGGTAAAGAATTGGGGGGAGAGGAGATTGAGATTGTCCTGGCTAAGCCCCCAGACAAGAAGAGGAAAGAGCGACAGGCTGCCAGGCAGACCAGCAGAAATACAGGGTATGACGACTATTACTATTACCCTCCTCCCCGCATGCCACCTCCAGGGCGTGGGCGTGGCCGAGGGGGGAGGGGAGGCTATGCGTACCCTCCTGACTACTATGGCTATGAAGAGTATTATGACGACTACTATGGCTATGATTACCACGACTATCGTGGCGGCTATGATGACCCTTACTATGGTTATGACGACATGTATACCATGAGGGGGCGTGGCAGTCGTGGTAGCCGTGGTGCTCCACCCCCTCCTAGAGCACGTGGTGTACCTCCAGCCCGTGGTGGAAGAGGTGGCTACGCGCCAAGAGGAGGTGCTCCCATGGGAGCAGGCCGAGGAGGGCGTGGTGGGGGACGTGGCGGACCCTTCCAGCCTCCTAGGGGGCGTGGCACCAGGGGGGCCCGCGGAAACCGCGGCGGAAATGTTGGCGGGAAAAGGAAGGCTGACGTGTTCAACCAACCCGACTCGAAGCGCCGCCAGACGACCAACCAGCAGAACTGGGGGTCACAGCCTATCGCTCAGCAGCCGTTACAGCAAGGTGGCGACTACGCTGGCAACTACGGTTACAGCAACGACACTCTGGAGTTCTCCCAGGATTCCTATGGCCAGCAGTGGAAGTAGAAGACACAAACAGCAACACAAAAAGGTATTTGGCTACAAtaagaaaatgacaaaaaaaataatcacaacaGAACACCCACCCTCCCCCTTcctgtgagaaaaaaaagacattgatTGGCACGCAGTGTTTAACTGACTTCTATTCTCCATCTCCCTCTGTAGAATATGTCAGTGACACAAAAAGGACACGCCCCCCCAGAATTGGCATCACAAatcctgattggctgaaagTACGTTTTGGCTGAAGACAAGAATGTATCCGATCCTCCTCCTGCCCCTGATTGGTTTGCTTACACACAGGCCTGACCGGGACATTTGTCTTAAATCATACTCCACTTTTATCCCTTccatttgttctttgttttaaagCCAGCAAcgaacattttaaagaaacaagGACTTTTTgacgtctaaaaaaaaaaaagaaaaagtaataaaataaacaagcaTAACAGTCTGAGAGAACATTAAAATCATGAAATGGTCTTGCAGAAAGCTCATGTCCAAACATTCAACTCACCCAACCACCCACCTGTCCCCCCATACTGGACACCTTCTTATGTCCCCCTTACCCCGTCGCttgctctatctctctatttctctctatttctctgtgaTTTCTGCTAGTGGCATAGGGACTTGCTTGTAAATAATGGCTGTCAGCtttagcttcattttcatttttttcttttttcagaagTGGAGAAAAGAATCCACTGGAAGGAAAAAAGTTTTGTAGCTGGAAGTACCATTAAACGTGTATGTTTAGCATTTCTAGAAGTAGTtcaattgtgttttttaaaaactgatataACAACTTCAaacgttttttttctctcctttttttttgaaATTTGCTCGTTAGGACTTGGTTTGGCTCACCTTAAGAGCCGTGACAGTTTGTTCTCTGATGTTTGtatttataacttttattttttgtttgttccgTTTCAATAAAAACTCATCCGAGCAACATCAATTGGTCAAGTAACTTGAAA
>XM_007239846.3
gtgtgtctgtgtgtgcgcgtgcctgtgtgtgtgtgtgagagcgcgCGCACGTCTGTCTGTCTCGTGGACAGAGCCCTCAGCAGCTCCCCTCGCTCCGCTCTTCTAACCGCCGCTTCCAGCgcccacagcagcagcagcacggcCGCGGGTTGGAGGAGCCGCCCTCGCAGGAGAACCCACACCAGAACCGAACCGAACGAAGAATGGCTGCTGAAGTGAATGGCAGCTCTGCTCCAGCAAAGGAGGAAGAAGAACCCATGGATGTCTCAGCCGGACACTCAGAGAACTACCAGACGCTCATAGATGCTGGGCTGCCCCAGAAAGTTGCAGAGAGTCTGGACAACATCTTTCAGACTGGTTTGGTGGCTTATGCTGACCTAGATGAGAGGGCAATCGATGCCCTGCGGGAGTTTAATGAAGAAGGAGCGCTGTCTGTACTGCAGCAGTTTAAGGAAAGCGACTTGTCCCATGTGCAGaataaaAGTGCTTTCCTGTGTGGAGTCATGAAAACATACAGACAGAGGGAAAAGCAAGGCAGCAAAGTACAGGAATCCACAAAAGGCCCAGACGAGTCAAAAATTAAGGCACTGCTGGAGAGGACAGGCTATACCCTTGATGTTACTACAGGCCAGAGGAAGTATGGTGGCCCACCACCAGAGGAGGTGTTCTCTGGCACTCAGCCTGGCATCGGCACAGAGGTGTTTGTGGGAAAGATCCCTCGGGACTTATATGAAGACGAGTTGGTTCCACTTTTTGAGAAGGCTGGGCCAATATGGGACCTGAGGTTAATGATGGACCCGCTGTCTGGGCAAAACCGCGGTTATGCGTTTATCACCTTCTGCAGCAAGGAGGCTGCACAGGAAGCTGTGAAACTGTGTGATAATTATGAGATCAGGCCAGGCAAGTATCTGGGTGTCTGCATCTCTGTAGCCAACAACCGCCTGTTTGTCGGCTCAATCCCAAAGAACAAGACCAGGGAGAGCATCCTGGAAGACTTTGGAAAAGTGACAGAGGGTCTGCAGGAAGTGATTCTGTACACGCAGGCTGATGATAAGAAGAAGAATCGGGGGTTCTGTTTCCTGGAGTACGAGGATCATAAGTCGGCAGCTCAGGCCCGTCGGCGGCTCATGAGCGGCAAGGTTAAGGTTTGGGGGAATCCTGTTACCGTTGAGTGGGCTGACCCAGTTGCTGAGCCTGATCCTGAAGTCATGGCCAAGGTGAAAGTGTTGTTTGTTCGTAAACTAGCCACTCCAGTTACAGAGGAattgctggagaagactttctCCCAGTTTGGAAAGCTTGAGCGTGTTAAGAAGCTGAAAGACTATGCTTTCGTGCACTTTGAGGAGCGAGATGCTGCTGTCAAGGCTATGGAGGAGATGAATGGTAAAGAATTGGGGGGAGAGGAGATTGAGATTGTCCTGGCTAAGCCCCCAGACAAGAAGAGGAAAGAGCGACAGGCTGCCAGGCAGACCAGCAGAAATACAGGGTATGACGACTATTACTATTACCCTCCTCCCCGCATGCCACCTCCAGGGCGTGGGCGTGGCCGAGGGGGGAGGGGAGGCTATGCGTACCCTCCTGACTACTATGGCTATGAAGAGTATTATGACGACTACTATGGCTATGATTACCACGACTATCGTGGCGGCTATGATGACCCTTACTATGGTTATGACGACATGTATACCATGAGGGGGCGTGGCAGTCGTGGTAGCCGTGGTGCTCCACCCCCTCCTAGAGCACGTGGTGTACCTCCAGCCCGTGGTGGAAGAGGTGGCTACGCGCCAAGAGGAGGTGCTCCCATGGGAGCAGGCCGAGGAGGGCGTGGTGGGGGACGTGGCGGACCCTTCCAGCCTCCTAGGGGGCGTGGCACCAGGGGGGCCCGCGGAAACCGCGGCGGAAATGTTGGCGGGAAAAGGAAGGCTGACGTGTTCAACCAACCCGACTCGAAGCGCCGCCAGACGACCAACCAGCAGAACTGGGGGTCACAGCCTATCGCTCAGCAGCCGTTACAGCAAGGTGGCGACTACGCTGGCAACTACGGTTACAGCAACGACACTCTGGAGTTCTCCCAGGATTCCTATGGCCAGCAGTGGAAGTAGAAGACACAAACAGCAACACAAAAAGAATATGTCAGTGACACAAAAAGGACACGCCCCCCCAGAATTGGCATCACAAatcctgattggctgaaagTACGTTTTGGCTGAAGACAAGAATGTATCCGATCCTCCTCCTGCCCCTGATTGGTTTGCTTACACACAGGCCTGACCGGGACATTTGTCTTAAATCATACTCCACTTTTATCCCTTccatttgttctttgttttaaagCCAGCAAcgaacattttaaagaaacaagGACTTTTTgacgtctaaaaaaaaaaaagaaaaagtaataaaataaacaagcaTAACAGTCTGAGAGAACATTAAAATCATGAAATGGTCTTGCAGAAAGCTCATGTCCAAACATTCAACTCACCCAACCACCCACCTGTCCCCCCATACTGGACACCTTCTTATGTCCCCCTTACCCCGTCGCttgctctatctctctatttctctctatttctctgtgaTTTCTGCTAGTGGCATAGGGACTTGCTTGTAAATAATGGCTGTCAGCtttagcttcattttcatttttttcttttttcagaagTGGAGAAAAGAATCCACTGGAAGGAAAAAAGTTTTGTAGCTGGAAGTACCATTAAACGTGTATGTTTAGCATTTCTAGAAGTAGTtcaattgtgttttttaaaaactgatataACAACTTCAaacgttttttttctctcctttttttttgaaATTTGCTCGTTAGGACTTGGTTTGGCTCACCTTAAGAGCCGTGACAGTTTGTTCTCTGATGTTTGtatttataacttttattttttgtttgttccgTTTCAATAAAAACTCATCCGAGCAACATCAATTGGTCAAGTAACTTGAAA
>XM_015603236.2
ctgtgtgtctgtgtgtgcgcgtgcctgtgtgtgtgtgtgagagcgcgCGCACGTCTGTCTGTCTCGTGGACAGAGCCCTCAGCAGCTCCCCTCGCTCCGCTCTTCTAACCGCCGCTTCCAGCgcccacagcagcagcagcacggcCGCGGGTTGGAGGAGCCGCCCTCGCAGGAGAACCCACACCAGAACCGAACCGAACGAAGAATGGCTGCTGAAGTGAATGGCAGCTCTGCTCCAGCAAAGGAGGAAGAAGAACCCATGGATGTCTCAGCCGGACACTCAGAGAACTACCAGACGCTCATAGATGCTGGGCTGCCCCAGAAAGTTGCAGAGAGTCTGGACAACATCTTTCAGACTGGTTTGGTGGCTTATGCTGACCTAGATGAGAGGGCAATCGATGCCCTGCGGGAGTTTAATGAAGAAGGAGCGCTGTCTGTACTGCAGCAGTTTAAGGAAAGCGACTTGTCCCATGTGCAGaataaaAGTGCTTTCCTGTGTGGAGTCATGAAAACATACAGACAGAGGGAAAAGCAAGGCAGCAAAGTACAGGAATCCACAAAAGGCCCAGACGAGTCAAAAATTAAGGCACTGCTGGAGAGGACAGGCTATACCCTTGATGTTACTACAGGCCAGAGGAAGTATGGTGGCCCACCACCAGAGGAGGTGTTCTCTGGCACTCAGCCTGGCATCGGCACAGAGGTGTTTGTGGGAAAGATCCCTCGGGACTTATATGAAGACGAGTTGGTTCCACTTTTTGAGAAGGCTGGGCCAATATGGGACCTGAGGTTAATGATGGACCCGCTGTCTGGGCAAAACCGCGGTTATGCGTTTATCACCTTCTGCAGCAAGGAGGCTGCACAGGAAGCTGTGAAACTGTGTGATAATTATGAGATCAGGCCAGGCAAGTATCTGGGTGTCTGCATCTCTGTAGCCAACAACCGCCTGTTTGTCGGCTCAATCCCAAAGAACAAGACCAGGGAGAGCATCCTGGAAGACTTTGGAAAAGTGACAGAGGGTCTGCAGGAAGTGATTCTGTACACGCAGGCTGATGATAAGAAGAAGAATCGGGGGTTCTGTTTCCTGGAGTACGAGGATCATAAGTCGGCAGCTCAGGCCCGTCGGCGGCTCATGAGCGGCAAGGTTAAGGTTTGGGGGAATCCTGTTACCGTTGAGTGGGCTGACCCAGTTGCTGAGCCTGATCCTGAAGTCATGGCCAAGGTGAAAGTGTTGTTTGTTCGTAAACTAGCCACTCCAGTTACAGAGGAattgctggagaagactttctCCCAGTTTGGAAAGCTTGAGCGTGTTAAGAAGCTGAAAGACTATGCTTTCGTGCACTTTGAGGAGCGAGATGCTGCTGTCAAGGCTATGGAGGAGATGAATGGTAAAGAATTGGGGGGAGAGGAGATTGAGATTGTCCTGGCTAAGCCCCCAGACAAGAAGAGGAAAGAGCGACAGGCTGCCAGGCAGACCAGCAGAAATACAGGGTATGACGACTATTACTATTACCCTCCTCCCCGCATGCCACCTCCAGGGCGTGGGCGTGGCCGAGGGGGGAGGGGAGGCTATGCGTACCCTCCTGACTACTATGGCTATGAAGAGTATTATGACGACTACTATGGCTATGATTACCACGACTATCGTGGCGGCTATGATGACCCTTACTATGGTTATGACGACATGTATACCATGAGGGGGCGTGGCAGTCGTGGTAGCCGTGGTGCTCCACCCCCTCCTAGAGCACGTGGTGTACCTCCAGCCCGTGGTGGAAGAGGTGGCTACGCGCCAAGAGGAGGTGCTCCCATGGGAGCAGGCCGAGGAGGGCGTGGTGGGGGACGTGGCGGACCCTTCCAGCCTCCTAGGGGGCGTGGCACCAGGGGGGCCCGCGGAAACCGCGGCGGAAATGTTGGCGGGAAAAGGAAGGCTGACGTGTTCAACCAACCCGACTCGAAGCGCCGCCAGACGACCAACCAGCAGAACTGGGGGTCACAGCCTATCGCTCAGCAGCCGTTACAGCAAGGTGGCGACTACGCTGGCAACTACGGTTACAGCAACGACACTCTGGAGTTCTCCCAGGATTCCTATGGCCAGCAGTGGAAGTAGAAGACACAAACAGCAACACAAAAAGGTATTTGGCTACAAtaagaaaatgacaaaaaaaataatcacaacaGAACACCCACCCTCCCCCTTcctgtgagaaaaaaaagacattgatTGGCACGCAGTGTTTAACTGACTTCTATTCTCCATCTCCCTCTGTAGAATATGTCAGTGACACAAAAAGGACACGCCCCCCCAGAATTGGCATCACAAatcctgattggctgaaagTACGTTTTGGCTGAAGACAAGAATGTATCCGATCCTCCTCCTGCCCCTGATTGGTTTGCTTACACACAGGCCTGACCGGGACATTTGTCTTAAATCATACTCCACTTTTATCCCTTccatttgttctttgttttaaagCCAGCAAcgaacattttaaagaaacaagGACTTTTTgacgtctaaaaaaaaaaaagaaaaagtaataaaataaacaagcaTAACAGTCTGAGAGAACATTAAAATCATGAAATGGTCTTGCAGAAAGCTCATGTCCAAACATTCAACTCACCCAACCACCCACCTGTCCCCCCATACTGGACACCTTCTTATGTCCCCCTTACCCCGTCGCttgctctatctctctatttctctctatttctctgtgaTTTCTGCTAGTGGCATAGGGACTTGCTTGTAAATAATGGCTGTCAGCtttagcttcattttcatttttttcttttttcagaagTGGAGAAAAGAATCCACTGGAAGGAAAAAAGTTTTGTAGCTGGAAGTACCATTAAACGTGTATGTTTAGCATTTCTAGAAGTAGTtcaattgtgttttttaaaaactgatataACAACTTCAaacgttttttttctctcctttttttttgaaATTTGCTCGTTAGGACTTGGTTTGGCTCACCTTAAGAGCCGTGACAGTTTGTTCTCTGATGTTTGtatttataacttttattttttgtttgttccgTTTCAATAAAAACTCATCCGAGCAACATCAATTGGTCAAGTAACTTGAAA

Function

symbol description
hnrnpr Enables mRNA binding activity. Acts upstream of or within axon extension involved in axon guidance. Predicted to be located in viral nucleocapsid. Predicted to be part of ribonucleoprotein complex. Predicted to be active in nucleus. Orthologous to human HNRNPR (heterogeneous nuclear ribonucleoprotein R).

NR:

description
PREDICTED: heterogeneous nuclear ribonucleoprotein R

GO:

id name namespace
GO:0048846 axon extension involved in axon guidance biological_process
GO:0000166 nucleotide binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG:

id description
K13161 HNRNPR; heterogeneous nuclear ribonucleoprotein R

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007239845.3 True 3106 mRNA 0.49 11 4929177 4935065
XM_007239846.3 False 2966 mRNA 0.50 12 4929183 4935065
XM_015603236.2 False 3105 mRNA 0.49 11 4929181 4935065

Neighbor

gene id symbol gene type direction distance location
LOC103029142 LOC108435612,LOC108274509,LOC107571533,LOC107571277,LOC107730909 coding upstream 44689 4857848 ~ 4884488 (+)
dpy19l4 dpy19l4 coding upstream 590095 4306665 ~ 4339082 (+)
LOC103045063 LOC108435620 coding upstream 713461 4132022 ~ 4215716 (+)
LOC103042852 LOC108274605,LOC108435589,LOC105028044 coding upstream 823214 3955008 ~ 4105963 (+)
LOC103032643 deptor,LOC108442483,LOC108274614,LOC107685573 coding upstream 994073 3923972 ~ 3935104 (+)
dnajc8 dnajc8,LOC102775708 coding downstream 8141 4943206 ~ 4954889 (+)
LOC111193076 NA coding downstream 21214 4956279 ~ 4957026 (+)
LOC111193046 NA coding downstream 44402 4979467 ~ 4980022 (+)
cfap69 cfap69 coding downstream 113441 5048506 ~ 5067507 (+)
LOC103041177 sfxn1,LOC108435595,LOC108275306,LOC107668583,LOC107749734 coding downstream 133836 5068901 ~ 5082606 (+)
G71215 NA non-coding upstream 84964 4744153 ~ 4844213 (+)
G71209 NA non-coding upstream 250455 4678331 ~ 4678722 (+)
G71201 NA non-coding upstream 306937 4621818 ~ 4622240 (+)
G71194 NA non-coding upstream 417780 4510801 ~ 4511397 (+)
G71147 herpud2,LOC108435611,LOC108275212,LOC107686057,LOC107737813,LOC107592253,LOC105897640 non-coding upstream 468776 4455930 ~ 4460401 (+)
G71244 NA non-coding downstream 6344 4941409 ~ 4942117 (+)
G71248 NA non-coding downstream 23091 4958156 ~ 5006225 (+)
G71246 NA non-coding downstream 28906 4963971 ~ 4968919 (+)
G71256 NA non-coding downstream 55787 4990852 ~ 4993179 (+)
G71260 NA non-coding downstream 66026 5001091 ~ 5043758 (+)
atpif1 atpif1,LOC105912502,LOC107571275,LOC104922170,LOC107730904,LOC103378180 other upstream 7357 4915813 ~ 4921820 (+)
LOC103028288 LOC108435610,LOC108275213,LOC106520856 other upstream 487246 4357065 ~ 4441931 (+)
LOC111193071 NA other upstream 1354419 3409670 ~ 3574758 (+)
G70846 NA other upstream 1550567 3377684 ~ 3378610 (+)
LOC103024487 syngap1a,LOC108275193,LOC108439800 other upstream 1636702 3121918 ~ 3292475 (+)
G71247 NA other downstream 21233 4956298 ~ 4980011 (+)
G71249 NA other downstream 28637 4963702 ~ 4967907 (+)
G71414 gstp1 other downstream 564843 5499908 ~ 5505638 (+)
LOC103037414 NA other downstream 737653 5672718 ~ 5678874 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other downstream 936025 5871090 ~ 5957019 (+)

Expression


Co-expression Network