prr5l (prr5l,LOC107573861)


Basic Information

Item Value
gene id prr5l
gene name prr5l,LOC107573861
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 20014235 ~ 20024227 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007244242.3
tgcaggCTCATGCTGGACTCGCGCGCTTTCACATCACCCTCTGATTTTCTCCACTTGTTGAGGATCAGCCGGTGTTTGCGGTTCTCTCTTTACCGGGAGTTTTAATGGAGTTTCTGCTGGGGGAGGAGTGGAGCCGGCCGCTGGAGGTTTACAAGGAGATGTGAGGGAGAAATGTGAGATAAAATTTCTGAAAAGACTACAGCTCGGACCGAGGCGGAGAGCGGTTTTTCTGTTATCTGGTGGGCTTCACTTTCACTGAATGATGGGATCTTTTCGGCGGCCCAGGCCTCGCTTCATGAGCTCAccagtgctttcagacctggCACGCTTCCATGCCAGCTCTCCAACCCTGCAGCTCTCTAATGCAAGTGTGTGGAACAGTGTCCAAACCGCTGTCATCAAAGTGTTCCAAGGAGGAGGACTTCAGAGCAATGAGCTGTACAGCCTGAATGAAAGCATTAGGTGGCTTCAAAGGACAGAGTTGGGTTCCTTCATCACAGAGTACTTTCAGGATCAGCTCCTGACCAAAGGACTGGCACATATACTGGAAAAGATTCAGCATCATGATGATGAAAACTGCCTCCAAGCTTTGTCTGAGATGTGGGTAGCATTTTTCACTGAGATCCTGCCAACGCTTCAAGCCATATTCTATCCTGTACAGGGCCAAGAGCTGACGGTGAGGCAGATGGCTTTGCTCGGTTTTAGGGACCTGGTCTTGATGAAGCTTCCTTTGGAGAACATGCTGCAAACAGCCCCTTACCCTCCTGCTATAATACAGATGCTGCTCATACTACAGggtATTCATGAGCCTAGTGGGCCAAGAAAAGAGTACTACCAACTGGAGAGACTGGTGGATATGGTGATTTCACCGTACCTCTACATAAGCCACCAGGACTCGTCTTCGGAGTGTCATTTGGAACAGTCCTCCTCAGTGCACTTTGGCCAGCCAGAGATCACAGTCACACCTTTTGGTCCGGAGTCGTTGCTGGCGCCTCTCTTCGAGCACGAAGGTGAGGCCTATTTGGAGAGGACCGGAGGCGTGCGGCGGCACACAGTTGCTAACATTCACTCAGACATCCAGCTTCTCTCCATCACAAACAGAATTCAAAcatctgatgatgatgatgatgatgatgatgatgatcatgaCAGTGGGAGCATCCAAGGAATAAAATCAGGGAGATGTGGGTCTCCTAGACCGTTTTCCAGTGAACCAGTAATACTGGACTTGCGATCAGCTGCATCATCATCGTTAAGACGTCCGAATCCTGCTCACCTGAGCTGTGAATTGGCAAGCTGAAGTGTCTTAATGGACCAGGGAGTACCCTGAAGATGCCTACCAAGCGTGCTTTTGATCCAGAGTGGTCTGCTTATTACATACACTGTGATCTGCAGTAAAATTGGGTAAGAAACGAGTCATCTTACACAAAGCCTAACAATGATTTCAGGTATTTTCACTAGCAATGGAATTGTATAGGGCATCAAAAGCAGTTGCAGTGTAAAATAGGCCAAACTGACCACTGAAACACTTTCTGCAAAACTTCCTATGGAATTATATTTGGCATAAGTTGTGTAGAAGTGGACCATACAGGTGCTTCAAGTGTACATTTTTGGACAAATTTGCACAATTAACTAATTTAATCATAAAAGAGCAAACTAAAAGTGGGCAGTGgaacatttcacccaaataaacttctCCTCTCAAGTTCCTGTAACAGTTTTCAATGTGCAGTAGGTTTAACATACATTAATAGTAATTCTTTGGTACAGTTTATCCAGGGAACTGCTTAAAGAGCTAAATAGAACATGGAATTAGCACAGTCACCTTCTTTGTAGCTCTCTAAAAAGGCTGCGACTTTCCCTCTGTGGAAACGGCAAAGCTGTGTGGAATTTCAGCCCTGCTGAGATACAAGAGTTTACATAGCTGCAGAAAGGCAGGGGTTCACAACTTGTACTTGGCTGGCCAGGGTGCAGGACAGTTTGCTGACATTTTTCCTTTTGTTCCCCACTGTGACACAACTACtgaactttttatatttataggaATGGTTCAGATAGTAATACTAAATCTACTAACCACCagtaaatgcaaaaatacaacTGTTAGCATTGGAAAACTGACATTTGTCTTAATTGTTGGATCTTGGCCTGCTTTCACTGTAAGCAATGTTAACTTGTTTGGATAAGACGTTCATGTAACTGACAAGTTAATTCAAATGCTTTTGAGCTGGAAAATTGGCAAACTGGACTCTGAACTGTTACTGAAGTTGCGCACCAGTGCTACAGTGAGGTATTATTTCTGACTGAGCTTTCAGCTGTATGGGATTATTGACTTAAGGTCACTGCCTTACACTTTTCTTGGTTTGAGACATTTATGCTCTTTCATAGTTTATAGTGTCTTGAGGGAAACTGTTATTTTATGTAAAGAATATGTTCTATGTTTGactaattatgtttattttattttgtgacattgtgttcagtaatgtgtacagtagtgtcaatttactgtaaaataaacaaagacaaaataaagcatttt
>XM_007244243.3
tgcaggCTCATGCTGGACTCGCGCGCTTTCACATCACCCTCTGATTTTCTCCACTTGTTGAGGATCAGCCGGTGTTTGCGGTTCTCTCTTTACCGGGAGTTTTAATGGAGTTTCTGCTGGGGGAGGAGTGGAGCCGGCCGCTGGAGGTTTACAAGGAGATGTGAGGGAGAAATGTGAGATAAAATTTCTGAAAAGACTACAGCTCGGACCGAGGCGGAGAGCGGgacagcagcagtatgtacAAACAGTCCTCAATACAGTGACGTTCCAGAGCTAAACAGAGAGCTCCAAAACCCCTAGTTCTGAGTTTTTCTGTTATCTGGTGGGCTTCACTTTCACTGAATGATGGGATCTTTTCGGCGGCCCAGGCCTCGCTTCATGAGCTCAccagtgctttcagacctggCACGCTTCCATGCCAGCTCTCCAACCCTGCAGCTCTCTAATGCAAGTGTGTGGAACAGTGTCCAAACCGCTGTCATCAAAGTGTTCCAAGGAGGAGGACTTCAGAGCAATGAGCTGTACAGCCTGAATGAAAGCATTAGGTGGCTTCAAAGGACAGAGTTGGGTTCCTTCATCACAGAGTACTTTCAGGATCAGCTCCTGACCAAAGGACTGGCACATATACTGGAAAAGATTCAGCATCATGATGATGAAAACTGCCTCCAAGCTTTGTCTGAGATGTGGGTAGCATTTTTCACTGAGATCCTGCCAACGCTTCAAGCCATATTCTATCCTGTACAGGGCCAAGAGCTGACGGTGAGGCAGATGGCTTTGCTCGGTTTTAGGGACCTGGTCTTGATGAAGCTTCCTTTGGAGAACATGCTGCAAACAGCCCCTTACCCTCCTGCTATAATACAGATGCTGCTCATACTACAGggtATTCATGAGCCTAGTGGGCCAAGAAAAGAGTACTACCAACTGGAGAGACTGGTGGATATGGTGATTTCACCGTACCTCTACATAAGCCACCAGGACTCGTCTTCGGAGTGTCATTTGGAACAGTCCTCCTCAGTGCACTTTGGCCAGCCAGAGATCACAGTCACACCTTTTGGTCCGGAGTCGTTGCTGGCGCCTCTCTTCGAGCACGAAGGTGAGGCCTATTTGGAGAGGACCGGAGGCGTGCGGCGGCACACAGTTGCTAACATTCACTCAGACATCCAGCTTCTCTCCATCACAAACAGAATTCAAAcatctgatgatgatgatgatgatgatgatgatgatcatgaCAGTGGGAGCATCCAAGGAATAAAATCAGGGAGATGTGGGTCTCCTAGACCGTTTTCCAGTGAACCAGTAATACTGGACTTGCGATCAGCTGCATCATCATCGTTAAGACGTCCGAATCCTGCTCACCTGAGCTGTGAATTGGCAAGCTGAAGTGTCTTAATGGACCAGGGAGTACCCTGAAGATGCCTACCAAGCGTGCTTTTGATCCAGAGTGGTCTGCTTATTACATACACTGTGATCTGCAGTAAAATTGGGTAAGAAACGAGTCATCTTACACAAAGCCTAACAATGATTTCAGGTATTTTCACTAGCAATGGAATTGTATAGGGCATCAAAAGCAGTTGCAGTGTAAAATAGGCCAAACTGACCACTGAAACACTTTCTGCAAAACTTCCTATGGAATTATATTTGGCATAAGTTGTGTAGAAGTGGACCATACAGGTGCTTCAAGTGTACATTTTTGGACAAATTTGCACAATTAACTAATTTAATCATAAAAGAGCAAACTAAAAGTGGGCAGTGgaacatttcacccaaataaacttctCCTCTCAAGTTCCTGTAACAGTTTTCAATGTGCAGTAGGTTTAACATACATTAATAGTAATTCTTTGGTACAGTTTATCCAGGGAACTGCTTAAAGAGCTAAATAGAACATGGAATTAGCACAGTCACCTTCTTTGTAGCTCTCTAAAAAGGCTGCGACTTTCCCTCTGTGGAAACGGCAAAGCTGTGTGGAATTTCAGCCCTGCTGAGATACAAGAGTTTACATAGCTGCAGAAAGGCAGGGGTTCACAACTTGTACTTGGCTGGCCAGGGTGCAGGACAGTTTGCTGACATTTTTCCTTTTGTTCCCCACTGTGACACAACTACtgaactttttatatttataggaATGGTTCAGATAGTAATACTAAATCTACTAACCACCagtaaatgcaaaaatacaacTGTTAGCATTGGAAAACTGACATTTGTCTTAATTGTTGGATCTTGGCCTGCTTTCACTGTAAGCAATGTTAACTTGTTTGGATAAGACGTTCATGTAACTGACAAGTTAATTCAAATGCTTTTGAGCTGGAAAATTGGCAAACTGGACTCTGAACTGTTACTGAAGTTGCGCACCAGTGCTACAGTGAGGTATTATTTCTGACTGAGCTTTCAGCTGTATGGGATTATTGACTTAAGGTCACTGCCTTACACTTTTCTTGGTTTGAGACATTTATGCTCTTTCATAGTTTATAGTGTCTTGAGGGAAACTGTTATTTTATGTAAAGAATATGTTCTATGTTTGactaattatgtttattttattttgtgacattgtgttcagtaatgtgtacagtagtgtcaatttactgtaaaataaacaaagacaaaataaagcatttt
>XM_022672290.1
CCAGAGCCCGAAAGCTGCTAATGAATCAGCAGTAGTGGGAGTAAGTTCTGTTGCCCATCTTGACAGTCATATATGCCCATAATTGACAGATGGCGAGCAGATCTGTATGACGTTTTTGTTCGTACTCATTATGCAGtcgaaaaagaaaatcaaagttTATGTATCCGTAGCCATCCAGTGCCTAGTTTTCTAATTTAGCTGATCTAGAAATAGAATGTGATTCATTAAAGCATAAATATACTGCCTTTTTTTACCCAAATTAATATTCCAGTATTTTCAACCTCCTCTAAATAGCAGTGATGATAATTAGAAGTAATTTTCACATGAGTCCCTTGGGAATGTAACAGTTCAACATATCACGTTGCAATTTGGAATAATGCAGCTGTATTTTATGATGTGCTGTTGTATCATGAGCACAGGCTGGTTGGTGGCTAGAGCTTGAGGTTGGGGCACAGTTATGAAATTTGTGTATTATCAAACCAGTAGTGTCACTGTGAGTGTAAGTACAGAACAGAAAACCAACTTGTTCAGCACCTTTTATTAGAACCCTGTGGGGAGCTAGCTTCTATCATAAGCGTGTTTTGAGTCAGCAGGTGTTTTACAGTAGGAGGAAGTTGTTGTCTGTGGTGACTGgagataaagtaaaaaaatagatagatagaatttgcatatttttgtacaattttatatctttattaggacatcaattttaaaatgtgtttgtgtgtgtttttaaaaaagtatataaaaaacatatataaaattgtTACGCAGGTTGGTGAACCTTTTATTTTTGGGGCTCATAGGCTGGTGTCAGATGTGTGTGGGACTGAGCTGCAATGTGTCAGGGTGAGGCACAGCCTGGTTATGTGTGAGCAGTATGGCCTGAGTCAGAGATCTACAGCACACTCAATGACCATGCATGCATGTGTTAAGGAGACAGCTGTTGTCATCTTCACAAGCATCAGTAGCATCAGATGTTCTTAACTGACTCTAATTCAGCTGGTGTATTGAATCGGTCAGATCGGACAGACAATTATAGATACTCCATATGCGCAAATGTTTGTGGACGACCCTTCAAATTGATGCATTCAGCTACTATATTGCACCCATTGTTTTCACACATCTGCAAAAACACATCTGTCCCTGTGGTGAAGTAGAACAAGAGTAGGACCCAATACTGAGATGTGAAGCAGTTCTATCCAGTACTTGTGGGAGGAGCAGGGGTGAAAATGCAGTCAGAATCCTCACAGGAATGCTCCACGATTTTGTAGAAAACCTTCTCTGGACAGAAGAGAGTTTctccaacaaaagtaggataaactctttattaaaaaacaatgttttcagAAGAAACTAAGAAACAAATGCGATATTCAGGCAGTGTTGCAGGTGCTATAGACGTCAgtagttttctttttctttcttttttaatatgacAGCACTGCATGTTTTTGTCATGCTGCTCAGGAACACGGTTTTGCAGAGGTTAGGCAGGAAGCTTGAAGACTACAGACCAAAGGAATTTTTCTGTTATCTGGTGGGCTTCACTTTCACTGAATGATGGGATCTTTTCGGCGGCCCAGGCCTCGCTTCATGAGCTCAccagtgctttcagacctggCACGCTTCCATGCCAGCTCTCCAACCCTGCAGCTCTCTAATGCAAGTGTGTGGAACAGTGTCCAAACCGCTGTCATCAAAGTGTTCCAAGGAGGAGGACTTCAGAGCAATGAGCTGTACAGCCTGAATGAAAGCATTAGGTGGCTTCAAAGGACAGAGTTGGGTTCCTTCATCACAGAGTACTTTCAGGATCAGCTCCTGACCAAAGGACTGGCACATATACTGGAAAAGATTCAGCATCATGATGATGAAAACTGCCTCCAAGCTTTGTCTGAGATGTGGGTAGCATTTTTCACTGAGATCCTGCCAACGCTTCAAGCCATATTCTATCCTGTACAGGGCCAAGAGCTGACGGTGAGGCAGATGGCTTTGCTCGGTTTTAGGGACCTGGTCTTGATGAAGCTTCCTTTGGAGAACATGCTGCAAACAGCCCCTTACCCTCCTGCTATAATACAGATGCTGCTCATACTACAGggtATTCATGAGCCTAGTGGGCCAAGAAAAGAGTACTACCAACTGGAGAGACTGGTGGATATGGTGATTTCACCGTACCTCTACATAAGCCACCAGGACTCGTCTTCGGAGTGTCATTTGGAACAGTCCTCCTCAGTGCACTTTGGCCAGCCAGAGATCACAGTCACACCTTTTGGTCCGGAGTCGTTGCTGGCGCCTCTCTTCGAGCACGAAGGTGAGGCCTATTTGGAGAGGACCGGAGGCGTGCGGCGGCACACAGTTGCTAACATTCACTCAGACATCCAGCTTCTCTCCATCACAAACAGAATTCAAAcatctgatgatgatgatgatgatgatgatgatgatcatgaCAGTGGGAGCATCCAAGGAATAAAATCAGGGAGATGTGGGTCTCCTAGACCGTTTTCCAGTGAACCAGTAATACTGGACTTGCGATCAGCTGCATCATCATCGTTAAGACGTCCGAATCCTGCTCACCTGAGCTGTGAATTGGCAAGCTGAAGTGTCTTAATGGACCAGGGAGTACCCTGAAGATGCCTACCAAGCGTGCTTTTGATCCAGAGTGGTCTGCTTATTACATACACTGTGATCTGCAGTAAAATTGGGTAAGAAACGAGTCATCTTACACAAAGCCTAACAATGATTTCAGGTATTTTCACTAGCAATGGAATTGTATAGGGCATCAAAAGCAGTTGCAGTGTAAAATAGGCCAAACTGACCACTGAAACACTTTCTGCAAAACTTCCTATGGAATTATATTTGGCATAAGTTGTGTAGAAGTGGACCATACAGGTGCTTCAAGTGTACATTTTTGGACAAATTTGCACAATTAACTAATTTAATCATAAAAGAGCAAACTAAAAGTGGGCAGTGgaacatttcacccaaataaacttctCCTCTCAAGTTCCTGTAACAGTTTTCAATGTGCAGTAGGTTTAACATACATTAATAGTAATTCTTTGGTACAGTTTATCCAGGGAACTGCTTAAAGAGCTAAATAGAACATGGAATTAGCACAGTCACCTTCTTTGTAGCTCTCTAAAAAGGCTGCGACTTTCCCTCTGTGGAAACGGCAAAGCTGTGTGGAATTTCAGCCCTGCTGAGATACAAGAGTTTACATAGCTGCAGAAAGGCAGGGGTTCACAACTTGTACTTGGCTGGCCAGGGTGCAGGACAGTTTGCTGACATTTTTCCTTTTGTTCCCCACTGTGACACAACTACtgaactttttatatttataggaATGGTTCAGATAGTAATACTAAATCTACTAACCACCagtaaatgcaaaaatacaacTGTTAGCATTGGAAAACTGACATTTGTCTTAATTGTTGGATCTTGGCCTGCTTTCACTGTAAGCAATGTTAACTTGTTTGGATAAGACGTTCATGTAACTGACAAGTTAATTCAAATGCTTTTGAGCTGGAAAATTGGCAAACTGGACTCTGAACTGTTACTGAAGTTGCGCACCAGTGCTACAGTGAGGTATTATTTCTGACTGAGCTTTCAGCTGTATGGGATTATTGACTTAAGGTCACTGCCTTACACTTTTCTTGGTTTGAGACATTTATGCTCTTTCATAGTTTATAGTGTCTTGAGGGAAACTGTTATTTTATGTAAAGAATATGTTCTATGTTTGactaattatgtttattttattttgtgacattgtgttcagtaatgtgtacagtagtgtcaatttactgtaaaataaacaaagacaaaataaagcatttt

Function

symbol description
prr5l Enables ubiquitin protein ligase binding activity. Involved in several processes, including TORC2 signaling; positive regulation of mRNA catabolic process; and regulation of fibroblast migration. Part of TORC2 complex.

NR:

description
proline-rich protein 5-like

GO: NA

KEGG:

id description
K20411 PRR5; proline-rich protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007244242.3 False 2542 mRNA 0.44 9 20014235 20024227
XM_007244243.3 False 2625 mRNA 0.44 10 20014235 20024227
XM_022672290.1 True 3843 mRNA 0.41 9 20016899 20024227

Neighbor

gene id symbol gene type direction distance location
LOC103023471 LOC108436948,LOC108275266 coding upstream 141523 19859433 ~ 19872712 (+)
LOC103024220 pim3,LOC108436897,LOC108275436,LOC107598820,LOC107573827,LOC107716739,LOC107696273 coding upstream 155400 19854598 ~ 19858835 (+)
LOC111193059 NA coding upstream 170013 19843302 ~ 19844222 (+)
LOC103030754 NA coding upstream 228130 19772487 ~ 19786105 (+)
LOC103047790 pk,LOC108436941,LOC108275437,LOC107716749 coding upstream 326125 19660273 ~ 19688110 (+)
api5 api5,LOC107696269,LOC107753602,LOC107661449 coding downstream 2950 20027177 ~ 20034797 (+)
rfwd3 rfwd3,LOC107754982,LOC107559137 coding downstream 124435 20148662 ~ 20160102 (+)
LOC103028218 LOC108428438,LOC108274991,LOC107559147 coding downstream 136674 20160901 ~ 20191617 (+)
tdrd12 NA coding downstream 185054 20209281 ~ 20230000 (+)
LOC103030550 LOC108428435,LOC108274760 coding downstream 229619 20253846 ~ 20276555 (+)
G75034 NA non-coding upstream 209259 19804766 ~ 19804976 (+)
G75033 NA non-coding upstream 214586 19799385 ~ 19799649 (+)
G75026 NA non-coding upstream 248470 19761774 ~ 19765765 (+)
G75017 NA non-coding upstream 281197 19732016 ~ 19733038 (+)
G74995 NA non-coding upstream 364851 19624659 ~ 19649384 (+)
G75131 NA non-coding downstream 36143 20060370 ~ 20122740 (+)
LOC111193104 NA non-coding downstream 260450 20284677 ~ 20288047 (+)
G75184 NA non-coding downstream 427960 20452187 ~ 20452452 (+)
G75192 NA non-coding downstream 552051 20576278 ~ 20577245 (+)
G75300 NA non-coding downstream 816306 20840533 ~ 20840981 (+)
LOC103044129 NA other upstream 476618 19527212 ~ 19537617 (+)
tmem17 tmem17,znf774,LOC107678976,LOC107753710 other upstream 552048 19459958 ~ 19462187 (+)
cadps2 NA other upstream 691460 19140149 ~ 19322775 (+)
G74832 NA other upstream 928679 19082816 ~ 19085556 (+)
LOC103029914 scamp5,scamp5a,LOC108436905,LOC103363822,LOC107395508,LOC107703195 other upstream 1534890 18470704 ~ 18479345 (+)
LOC103028745 NA other downstream 179392 20203619 ~ 20207955 (+)
G75383 morc2,LOC107754332,LOC107701074,LOC107674835 other downstream 999029 21023256 ~ 21025128 (+)
G75391 pus7 other downstream 1064395 21088622 ~ 21096906 (+)
mov10l1 NA other downstream 1226240 21250467 ~ 21264776 (+)
LOC103028957 rfx7,LOC108428391,LOC108275305,LOC107695007,LOC107563886,LOC100538179,LOC107741823,LOC100694937 other downstream 2730746 22754973 ~ 22780959 (+)

Expression


Co-expression Network