c8h11orf96 (si:ch1073-281m9.1,cunh11orf96,LOC103025886,LOC107696240,LOC107661503,LOC107575890,LOC107580776)


Basic Information

Item Value
gene id c8h11orf96
gene name si:ch1073-281m9.1,cunh11orf96,LOC103025886,LOC107696240,LOC107661503,LOC107575890,LOC107580776
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 20060386 ~ 20062075 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007244247.3
CAAGGGCTGGATTTGTCTCTGTCAGTAGCTCTCACAGAAACGACCCAGATACACAGCCACTGGCACAAGGAAGCAGGAGACTGCCTGTGAAAAACGCATTGCGCTGCTGAGCGAGACACAGAGACCAGAGAGATCCAGAGACTACTACAGTACTAGAGGGGAAAAAAGGACCTGGTGGACTGACAATCATCATCAAAGCTCCAGGATAATCAGGCATTTTGGAAGAGTGCCGAGATCTGGAAGTGCTTTAAACTGAGTGAGAACACTTCCACTCTTTTGGCTAGAGGAGAAATAAGCCAAAACTCAGCACTGGAATCTTCTTCAAAGAGAGATAAGGGGAGTGAAGGAGCAGAAACATCTACTGCACCCCAGAAGACAAACGCTGAGCGTTTTCCATCTCCACCCATGGCCGCACGTCCAATGGAGACAGTGGGTTTCCCCATGATTCCAGCTCACGTACTGGCTTCTGCCATGGAGGAGTTCCCTCAGCAGCTCCCTGTACCCAAGGGCCCGGCCAAGGGGCGCAGTCGTCCCCGACGACCCCGAGAGGCCCGTTTCAAGACCCAGCCCGTCACCTTCGCAGAGATTGCAGAGGTTGAGGAGGAAGGGGCTTCACCGCTGGAGGAGGAGAGAGCCAGACGCTCCTTCCTGCAGTCGCTGGAGAGCCTGAGGAGAAGCACACAGACACTGCACCACACAGGCTCCACACACTCTGGCAGGACCAGCACACCCACGCAGGCCAGCCTGGACTCCAGTGACTCGGACTCAGCCCCCTGAAGAGActcagagagtgagaggaggatACAAGAGGGAAAGAAAAGAGATGGGTGAAAGAAAGAGGGCTGTGATGTTGAGTGTTAAATCCTCTCCTCTGCTGTAATGCTGTAAAAGCTGTTCTGCTGACTTTACTGGACTGGATTCCAGTGAATATTGCACATATCCTTCTCTTGAAGCATACTTTGCCGCTATAACTTAGTTACGGTATCTTACGCACATCCTTGTGCCAAACTCCAGTCAAGCCAAGCAATGGCAGGCTGAATATTGATTATGCTTTTTAGCTGTAGCATTTTAACAGCCTTTTCATTCTAACAACTTAAATATTCCAAAAAAAGATGTTTCTTCATTTGCAAAATAAGACTTGAGGCCGTTCTTTATAAGCTTTAAAGATAGGTAGATCATATACCTGTTCTTTTTCTGTTCCAATCAAAAGAGCAGAAACACTGTTTAATCATTTCATCTTTTTGCCTGGTTAGAGATTATAGAATAGCTTTTTCATTGTCCAGCTCGGACTTCCGTTAGTTCATCTTTAACACTTCATCTTCATAATTATGCAGTCAAATCAttgacagcacacacacacacacactgcataggAGACAATGTTTCACAATGATGATGTTACTTGAGTCTGCCAACTTAGTGTACTTACTAATGAACTCAGAGATGATCAAAGTATTTTCTTGCAAAAGTTACagatatttatttacagattatCTTGTTGATATAACTAAGAGATTagaaatgttagaaatgttttgtTGACACTGTGGGCTTGCAAGGTCACTATTGCAGAAAAACAAATTATGGAACTATGAATATATGATgcctttatatttttgttttacatttattatctttgtaaaaagtaatttcttacttactttaataaatatatacatatataaatata

Function

symbol description
si:ch1073-281m9.1 Orthologous to human C11orf96 (chromosome 11 open reading frame 96).

NR:

description
PREDICTED: uncharacterized protein C11orf96 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007244247.3 True 1690 mRNA 0.44 1 20060386 20062075

Neighbor

gene id symbol gene type direction distance location
ticrr NA coding downstream 9101 20037455 ~ 20051285 (-)
LOC103024527 fam19a5b,LOC103024527,LOC108428378,LOC107696241,LOC107753604,LOC107598818,LOC108274593 coding downstream 87728 19939635 ~ 19972658 (-)
LOC103030439 ube2q2,LOC108436947,LOC107696278,LOC105015542,LOC107661444 coding downstream 288061 19762795 ~ 19772325 (-)
LOC103021510 LOC108436943 coding downstream 310885 19730163 ~ 19749501 (-)
LOC103030119 hcn4,LOC108436942,LOC107696280,LOC107573709,LOC106530001 coding downstream 334837 19692184 ~ 19725549 (-)
alkbh3 alkbh3 coding upstream 11431 20073506 ~ 20081335 (-)
LOC103045029 LOC108428372 coding upstream 130450 20192525 ~ 20206698 (-)
LOC103029688 si:ch1073-174d20.1,dbndd1,LOC108428370,LOC108275320,LOC107723994,LOC107742629,LOC107559144,LOC107570651 coding upstream 181291 20243366 ~ 20253823 (-)
ankrd27 ankrd27 coding upstream 778429 20840504 ~ 20863315 (-)
LOC103032734 LOC108428429,LOC108275416,LOC107577622,LOC107566260,LOC107682256 coding upstream 807612 20869687 ~ 20877379 (-)
G75208 api5,LOC107753602,LOC107661449 non-coding downstream 25627 20032610 ~ 20034759 (-)
G75106 NA non-coding downstream 187705 19871142 ~ 19872681 (-)
G75093 NA non-coding downstream 255416 19804766 ~ 19804970 (-)
G75092 NA non-coding downstream 260761 19799385 ~ 19799625 (-)
G75081 NA non-coding downstream 313941 19745564 ~ 19746445 (-)
LOC107197502 NA non-coding upstream 39637 20101712 ~ 20129570 (-)
G75223 NA non-coding upstream 86614 20148689 ~ 20151436 (-)
G75224 rfwd3,LOC106584535 non-coding upstream 91472 20153547 ~ 20158204 (-)
G75232 LOC108428438,LOC108274991,LOC107559147 non-coding upstream 119075 20181150 ~ 20186487 (-)
G75265 NA non-coding upstream 210700 20272775 ~ 20276444 (-)
G75207 api5,LOC107696269,LOC107753602 other downstream 28359 20027162 ~ 20032027 (-)
G75100 LOC108436948,LOC108275266 other downstream 194404 19859694 ~ 19865982 (-)
G74838 wasl,LOC105896696,LOC108275301 other downstream 987498 19070938 ~ 19072888 (-)
LOC103034453 LOC108436916,LOC107753633,LOC107659484,LOC107573489,LOC107752304,LOC108181664,LOC107598834 other downstream 1052020 18992668 ~ 19008366 (-)
G74791 NA other downstream 1119922 18939174 ~ 18940464 (-)
hsd17b12 hsd17b12,hsd17b12a,LOC107661451,LOC107696265,LOC107573907,LOC107716735,LOC107753600 other upstream 22353 20084428 ~ 20100250 (-)
LOC103032014 maf,LOC108428434,LOC108274756,LOC102790406,LOC102298902,LOC101477682,LOC102192535,LOC101173775,LOC100702616,LOC107663990,LOC107565340 other upstream 560566 20622641 ~ 20748208 (-)
gatd1 pddc1,LOC102788149 other upstream 1003244 21065319 ~ 21071246 (-)
LOC111193105 LOC102794092,LOC108274651,LOC107571202,LOC108428364 other upstream 1207429 21269504 ~ 21273017 (-)
LOC103024007 LOC108428399 other upstream 2380661 22442736 ~ 22574013 (-)

Expression


Co-expression Network