alkbh3 (alkbh3)


Basic Information

Item Value
gene id alkbh3
gene name alkbh3
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 20073506 ~ 20081335 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007244248.3
TCAAAGAGGTTAAGGGGGTTTGAAACCAATAGCTTAAGTAAAAAAACGTGACTTTGTtacttcagcttctacagaagtattttaaaccttaGTATATTTAactctacctgagtaatgaatgtgaatacttttaacACTTTACAGTTACAGTGTTTTTGTAGCATGGTGAATTTGTAGGAACTAGGAACTATTGTACAGGTGGTGGACTGAGGAAAGTCGGACGGAGAGGGGGAAAACACTGTGAAAGCGAGTCTCAGCgTTAATTTGACCTCTATGGGTGACAAACGTCAGAGAGCAAGAGTGCAGGGCTCTTGGGCAAAACCTGCAGGGAAACCCTCTCACTCAGTTGCAGGTCGGCAGCAGCCAGTGCCCGGGTCATGGAACACTGGGAACGTACCAAGAACATATGAGTTCCATCAACCAGCTGATCCGGTCAGAGTGATACCTGTGGAAAAGGTGCTAGAAGAGGCTGGGGACTATGAGATTAGCCAAGGTCCCACTGGAGTGTCCAGACTGCGGCTCCTTCCAGGGTTTCTACCCGTGGAAGAGGCTGACTGGATGTTCGCTAGACTGATGGCCGAGCTGCCATGGTCACAGAAGACCAATTATAGGATGATGGGTGAGGCATATGAAGAACCCAGGCTGACCTGCTGGTATGGAGAACTGCCTTACACTTACTCCCACTCCACAATGGAAGCTAACCCTCAGTGGCATCCTGTCCTCACAACCCTGCGCCAGGCCATTGAGCGGGAGACCTGTCACACATTTAACTCATTACTCTGTAACTTGTACCGTGATGGAAAGGATAGCATTGCGTGGCACAGTGACGACGAACCCTCTTTAGGCCCTCAACCCACCATCGCCTCTCTCAGTCTAGGGGACACTCGAGCCTTTAGCCTCCGGAAGAAACCACCTCCAGAGGAGAAAGGGGATTATACATATACAGAGAAACTAAGGGTACCGCTGAGTCATGGTACACTCCTCATTATGGAAGGCTGCACGCAAGAAGACTGGCAGCATCAGGTGGCAAAGGAGTACCATGACCGAGGCCCTAGAATAAACCTGACCTTTCGTACAATCTACCCAGAACATCCCTCCAAGAGATGATTGGTAATGATGGAGGAGAGAGACAATAAATACTAAAAGAGCTGTACATACTGTAGTTGCAGCCCATTACTCACTAGATATAAATGGGACAGGGCTGAAAAGAACATGGGGCACTTGCAGAACATCAACAAATCGGTGAAGGATTTTGTCCACCAGCTGCTTTGCCAAATATATAACCAAACTGACCTAAAGTGCACTTTTCTTTTAGTTATACATTTTgtctttaaaatatgttttataaaaaaaagatgttacTTTCCAACAGAACTTTGTTTGAAGTACAGTAAATAATACGTTTTCATGTTTGATAGCTTTGTGAGTGAGTTTTGTTTATTACTTTAGTAAAACATAGAAGAACTGTGATGCAACTGTGAAACTGATTTAAGTCTTCTTCAAATAGAGATGGGTCACTTTAGAGATCCTGAAGCTgttaaaatgtttcatttaaaatgaagtaaaataatatttcatttataaaaatagacaATTAGAGAAAGTACTCCCCATAGATAGTATGGATAGTTAATTTCCAACAAAGCATTGTTTGAACTACGGCTCctaatttgtttctttgtttgataGCTTTGTAAAAGTGATTTTagtttaatacttaa
>XM_007244249.3
tatttaaaaacgGCCTTTCCTTACAGAGAATGAGGTCTGTTCAGACGAGGCTTCAATTTGTGAGCTTTTCTGCGCTGTTCCAGTTAATTTGACCTCTATGGGTGACAAACGTCAGAGAGCAAGAGTGCAGGGCTCTTGGGCAAAACCTGCAGGGAAACCCTCTCACTCAGTTGCAGGTCGGCAGCAGCCAGTGCCCGGGTCATGGAACACTGGGAACGTACCAAGAACATATGAGTTCCATCAACCAGCTGATCCGGTCAGAGTGATACCTGTGGAAAAGGTGCTAGAAGAGGCTGGGGACTATGAGATTAGCCAAGGTCCCACTGGAGTGTCCAGACTGCGGCTCCTTCCAGGGTTTCTACCCGTGGAAGAGGCTGACTGGATGTTCGCTAGACTGATGGCCGAGCTGCCATGGTCACAGAAGACCAATTATAGGATGATGGGTGAGGCATATGAAGAACCCAGGCTGACCTGCTGGTATGGAGAACTGCCTTACACTTACTCCCACTCCACAATGGAAGCTAACCCTCAGTGGCATCCTGTCCTCACAACCCTGCGCCAGGCCATTGAGCGGGAGACCTGTCACACATTTAACTCATTACTCTGTAACTTGTACCGTGATGGAAAGGATAGCATTGCGTGGCACAGTGACGACGAACCCTCTTTAGGCCCTCAACCCACCATCGCCTCTCTCAGTCTAGGGGACACTCGAGCCTTTAGCCTCCGGAAGAAACCACCTCCAGAGGAGAAAGGGGATTATACATATACAGAGAAACTAAGGGTACCGCTGAGTCATGGTACACTCCTCATTATGGAAGGCTGCACGCAAGAAGACTGGCAGCATCAGGTGGCAAAGGAGTACCATGACCGAGGCCCTAGAATAAACCTGACCTTTCGTACAATCTACCCAGAACATCCCTCCAAGAGATGATTGGTAATGATGGAGGAGAGAGACAATAAATACTAAAAGAGCTGTACATACTGTAGTTGCAGCCCATTACTCACTAGATATAAATGGGACAGGGCTGAAAAGAACATGGGGCACTTGCAGAACATCAACAAATCGGTGAAGGATTTTGTCCACCAGCTGCTTTGCCAAATATATAACCAAACTGACCTAAAGTGCACTTTTCTTTTAGTTATACATTTTgtctttaaaatatgttttataaaaaaaagatgttacTTTCCAACAGAACTTTGTTTGAAGTACAGTAAATAATACGTTTTCATGTTTGATAGCTTTGTGAGTGAGTTTTGTTTATTACTTTAGTAAAACATAGAAGAACTGTGATGCAACTGTGAAACTGATTTAAGTCTTCTTCAAATAGAGATGGGTCACTTTAGAGATCCTGAAGCTgttaaaatgtttcatttaaaatgaagtaaaataatatttcatttataaaaatagacaATTAGAGAAAGTACTCCCCATAGATAGTATGGATAGTTAATTTCCAACAAAGCATTGTTTGAACTACGGCTCctaatttgtttctttgtttgataGCTTTGTAAAAGTGATTTTagtttaatacttaa
>XM_022672294.1
ATTCAAAGAGGTTAAGGGGGTTTGAAACCAATAGCTTAAGTAAAAAAACGTGACTTTGTtacttcagcttctacagaagtattttaaaccttaGTATATTTAactctacctgagtaatgaatgtgaatacttttaacACTTTACAGTTACAGTGTTTTTGTAGCATGGTGAATTTGTAGGAACTAGGAACTATTGTACAGGTGGTGGACTGAGGAAAGTCGGACGGAGAGGGGGAAAACACTGTGAAAGCGAGTCTCAGCgTTAATTTGACCTCTATGGGTGACAAACGTCAGAGAGCAAGAGTGCAGGGCTCTTGGGCAAAACCTGCAGGGAAACCCTCTCACTCAGTTGCAGGTCGGCAGCAGCCAGTGCCCGGGTCATGGAACACTGGGAACGTACCAAGAACATATGAGTTCCATCAACCAGCTCCGGTCAGAGTGATACCTGTGGAAAAGGTGCTAGAAGAGGCTGGGGACTATGAGATTAGCCAAGGTCCCACTGGAGTGTCCAGACTGCGGCTCCTTCCAGGGTTTCTACCCGTGGAAGAGGCTGACTGGATGTTCGCTAGACTGATGGCCGAGCTGCCATGGTCACAGAAGACCAATTATAGGATGATGGGTGAGGCATATGAAGAACCCAGGCTGACCTGCTGGTATGGAGAACTGCCTTACACTTACTCCCACTCCACAATGGAAGCTAACCCTCAGTGGCATCCTGTCCTCACAACCCTGCGCCAGGCCATTGAGCGGGAGACCTGTCACACATTTAACTCATTACTCTGTAACTTGTACCGTGATGGAAAGGATAGCATTGCGTGGCACAGTGACGACGAACCCTCTTTAGGCCCTCAACCCACCATCGCCTCTCTCAGTCTAGGGGACACTCGAGCCTTTAGCCTCCGGAAGAAACCACCTCCAGAGGAGAAAGGGGATTATACATATACAGAGAAACTAAGGGTACCGCTGAGTCATGGTACACTCCTCATTATGGAAGGCTGCACGCAAGAAGACTGGCAGCATCAGGTGGCAAAGGAGTACCATGACCGAGGCCCTAGAATAAACCTGACCTTTCGTACAATCTACCCAGAACATCCCTCCAAGAGATGATTGGTAATGATGGAGGAGAGAGACAATAAATACTAAAAGAGCTGTACATACTGTAGTTGCAGCCCATTACTCACTAGATATAAATGGGACAGGGCTGAAAAGAACATGGGGCACTTGCAGAACATCAACAAATCGGTGAAGGATTTTGTCCACCAGCTGCTTTGCCAAATATATAACCAAACTGACCTAAAGTGCACTTTTCTTTTAGTTATACATTTTgtctttaaaatatgttttataaaaaaaagatgttacTTTCCAACAGAACTTTGTTTGAAGTACAGTAAATAATACGTTTTCATGTTTGATAGCTTTGTGAGTGAGTTTTGTTTATTACTTTAGTAAAACATAGAAGAACTGTGATGCAACTGTGAAACTGATTTAAGTCTTCTTCAAATAGAGATGGGTCACTTTAGAGATCCTGAAGCTgttaaaatgtttcatttaaaatgaagtaaaataatatttcatttataaaaatagacaATTAGAGAAAGTACTCCCCATAGATAGTATGGATAGTTAATTTCCAACAAAGCATTGTTTGAACTACGGCTCctaatttgtttctttgtttgataGCTTTGTAAAAGTGATTTTagtttaatacttaa
>XM_022672295.1
GCATTCAAAGAGGTTAAGGGGGTTTGAAACCAATAGCTTAAGTAAAAAAACGTGACTTTGTtacttcagcttctacagaagtattttaaaccttaGTATATTTAactctacctgagtaatgaatgtgaatacttttaacACTTTACAGTTACAGTGTTTTTGTAGCATGGTGAATTTGTAGGAACTAGGAACTATTGTACAGGTGGTGGACTGAGGAAAGTCGGACGGAGAGGGGGAAAACACTGTGAAAGCGAGTCTCAGCgTTAATTTGACCTCTATGGGTGACAAACGTCAGAGAGCAAGAGTGCAGGGCTCTTGGGCAAAACCTGCAGGGAAACCCTCTCACTCAGTTGCAGGTCGGCAGCAGCCAGTGCCCGGGTCATGGAACACTGGGAACGTACCAAGAACATATGAGTTCCATCAACCAGCTGATCCGGTCAGAGTGATACCTGTGGAAAAGGTGCTAGAAGAGGCTGGGGACTATGAGATTAGCCAAGGTCCCACTGGAGTGTCCAGACTGCGGCTCCTTCCAGGGTTTCTACCCGTGGAAGAGGCTGACTGGATGTTCGCTAGACTGATGGCCGAGCTGCCATGGTCACAGAAGACCAATTATAGGATGATGGGTGAGGCATATGAAGAACCCAGGCTGACCTGCTGGTATGGAGAACTGCCTTACACTTACTCCCACTCCACAATGGAAGCTAACCCTCAGTGGCATCCTGTCCTCACAACCCTGCGCCAGGCCATTGAGCGGGAGACCTGTCACACATTTAACTCATTACTCTGTAACTTGTACCGTGATGGAAAGGATAGCATTGCGTGGCACAGTGACGACGAACCCTCTTTAGGCCCTCAACCCACCATCGCCTCTCTCAGTCTAGGGGACACTCGAGCCTTTAGCCTCCGGAAGAAACCACCTCCAGAGGAGAAAGGGGATTATACATATACAGAGAAACTAAGGGTACCGCTGAGTCATGGTACACTCCTCATTATGGAAGGCTGCACGCAAGAAGACTGGCAGAAACAGTGATCTAGAAAGAAGTAAGAGCATCAGGTGGCAAAGGAGTACCATGACCGAGGCCCTAGAATAAACCTGACCTTTCGTACAATCTACCCAGAACATCCCTCCAAGAGA

Function

symbol description
alkbh3 Predicted to enable dioxygenase activity. Predicted to act upstream of or within DNA dealkylation involved in DNA repair and oxidative single-stranded DNA demethylation. Predicted to be active in nucleus. Orthologous to human ALKBH3 (alkB homolog 3, alpha-ketoglutarate dependent dioxygenase).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016706 2-oxoglutarate-dependent dioxygenase activity molecular_function

KEGG:

id description
K10860 ALKBH3, DEPC1; mRNA N1-methyladenine demethylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007244248.3 True 1721 mRNA 0.43 10 20073506 20081331
XM_007244249.3 False 1545 mRNA 0.43 10 20073506 20081064
XM_022672294.1 False 1720 mRNA 0.43 10 20073506 20081333
XM_022672295.1 False 1135 mRNA 0.49 11 20074123 20081335

Neighbor

gene id symbol gene type direction distance location
c8h11orf96 si:ch1073-281m9.1,cunh11orf96,LOC103025886,LOC107696240,LOC107661503,LOC107575890,LOC107580776 coding downstream 11431 20060386 ~ 20062075 (-)
ticrr NA coding downstream 22221 20037455 ~ 20051285 (-)
LOC103024527 fam19a5b,LOC103024527,LOC108428378,LOC107696241,LOC107753604,LOC107598818,LOC108274593 coding downstream 100848 19939635 ~ 19972658 (-)
LOC103030439 ube2q2,LOC108436947,LOC107696278,LOC105015542,LOC107661444 coding downstream 301181 19762795 ~ 19772325 (-)
LOC103021510 LOC108436943 coding downstream 324005 19730163 ~ 19749501 (-)
LOC103045029 LOC108428372 coding upstream 111190 20192525 ~ 20206698 (-)
LOC103029688 si:ch1073-174d20.1,dbndd1,LOC108428370,LOC108275320,LOC107723994,LOC107742629,LOC107559144,LOC107570651 coding upstream 162031 20243366 ~ 20253823 (-)
ankrd27 ankrd27 coding upstream 759169 20840504 ~ 20863315 (-)
LOC103032734 LOC108428429,LOC108275416,LOC107577622,LOC107566260,LOC107682256 coding upstream 788352 20869687 ~ 20877379 (-)
trnat-agu_2 NA coding upstream 814768 20896103 ~ 20896176 (-)
G75208 api5,LOC107753602,LOC107661449 non-coding downstream 38747 20032610 ~ 20034759 (-)
G75106 NA non-coding downstream 200825 19871142 ~ 19872681 (-)
G75093 NA non-coding downstream 268536 19804766 ~ 19804970 (-)
G75092 NA non-coding downstream 273881 19799385 ~ 19799625 (-)
G75081 NA non-coding downstream 327061 19745564 ~ 19746445 (-)
LOC107197502 NA non-coding upstream 20377 20101712 ~ 20129570 (-)
G75223 NA non-coding upstream 67354 20148689 ~ 20151436 (-)
G75224 rfwd3,LOC106584535 non-coding upstream 72212 20153547 ~ 20158204 (-)
G75232 LOC108428438,LOC108274991,LOC107559147 non-coding upstream 99815 20181150 ~ 20186487 (-)
G75265 NA non-coding upstream 191440 20272775 ~ 20276444 (-)
G75207 api5,LOC107696269,LOC107753602 other downstream 41479 20027162 ~ 20032027 (-)
G75100 LOC108436948,LOC108275266 other downstream 207524 19859694 ~ 19865982 (-)
G74838 wasl,LOC105896696,LOC108275301 other downstream 1000618 19070938 ~ 19072888 (-)
LOC103034453 LOC108436916,LOC107753633,LOC107659484,LOC107573489,LOC107752304,LOC108181664,LOC107598834 other downstream 1065140 18992668 ~ 19008366 (-)
G74791 NA other downstream 1133042 18939174 ~ 18940464 (-)
hsd17b12 hsd17b12,hsd17b12a,LOC107661451,LOC107696265,LOC107573907,LOC107716735,LOC107753600 other upstream 3093 20084428 ~ 20100250 (-)
LOC103032014 maf,LOC108428434,LOC108274756,LOC102790406,LOC102298902,LOC101477682,LOC102192535,LOC101173775,LOC100702616,LOC107663990,LOC107565340 other upstream 541306 20622641 ~ 20748208 (-)
gatd1 pddc1,LOC102788149 other upstream 983984 21065319 ~ 21071246 (-)
LOC111193105 LOC102794092,LOC108274651,LOC107571202,LOC108428364 other upstream 1188169 21269504 ~ 21273017 (-)
LOC103024007 LOC108428399 other upstream 2361401 22442736 ~ 22574013 (-)

Expression


Co-expression Network