LOC103028218 (LOC108428438,LOC108274991,LOC107559147)


Basic Information

Item Value
gene id LOC103028218
gene name LOC108428438,LOC108274991,LOC107559147
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 20160901 ~ 20191617 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007244256.3
ACTAAGCGCCGCGCACgacaacacacgcacacacagcacTTGCGTCCGGCTGCCGTAGCTAACGTTAGCGTAGTTTGCCGAAGATGGCGGCTTGTAGACGTGTGCAGCTTCTCTTACTCTGCGCGTGTCTCTCTTCTCGCGTCTGCTTCACTCTGGGAGGAAAGTCGCAGGGCGGACTGAATGAAAATGCACCGGATAATGGCGAGGGTGGTAAAAACCCGGGCGCTGCGCTGCAGGAAGGGAAGCCTGCAGGGGCCCCTCAGCCCCGCCGCACCACCGGCTGGAAGCTGGCAGAGGAGGAGGCCTGCCGGGAGGACCTGACGAGGCTTTGTCCCAAACATTCCTGGAATAACAACCTGGCCGTGCTCGAGTGCCTGCAGGACCGAAAAGAGgATACGGAGATCTCGGGTGATTGTAACCACCTCCTGTGGAACTATAAGCTGAACCTGACGACAGACCCGAAGTTTGAGTCTGTGGCTGTGGAGGTGTGCAAGAGCACCATCAGTGACATTAAGGAGTGTGCAGCAGAAGAGCGAGGAAAAGGCTACTTGGTGTCATGTTTGGTGGATCATCGTGTTAACATCACTGAATATCAGTGCAGTCAGTACATAACGAAGATGACCAGCATCGTCTTTAGCGACTACCGCCTCATCTGTGGTTTCATGGACAAGTGCAAGGAGGACATCAACACATTACACTGTGGAAGTGTTAACACCGGCGAGAAGgaTGTGCACTCTCAGGGAGAGGTGATAGCCTGTCTGGAGAAAGGTCTGGTGAGTGAGGTGGAGAACCAAGCAGGACATTATTCTATTAAGGAGGAATGTAAGAAGGCCATCATGCGCGTGGCAGAGCTTTCCTCAGATGACTTCCACTTGGACAGACATCTCTACTTCGCTTGCCGGGAGGACCGAGAGCGCTTCTGCGAAAATACTGCAGCAGGAGAGGGACGGGTTTACAAATGTCTCTTCAACCACAAGTTTGAAGACACTATGTCTGGAAAGTGCAGGGAGGCTCTCTCCACCAGACAGAAGCTGATTGCCCAGGACTATAAGGTCAGCTACTCTCTGGCCAAGGCCTGCAAACAGGATCTGCGCAAATACCGCTGCAGTGTGGACACCACTCTTCCCCGAGCTCGAGAGGCCAAGCTTTCCTACCTGCTCCTGTGTCTGGAGTCAGCTGTTCATCGAGGACGCACAGTCAGTGGTGAGTGTCAGGGTGAGATGTTGGACTACAGGCGCATGCTGATGGAAGATTACTCTCTGAGCCCGGAGATCGTGCTTCACTGTCGTGGTGAAATCGACTCACATTGCTCTGGTCTGCACCACAAGGGCCGAACACTTCACTGCCTCATGAGAGTGTCCAGGGAGAAAGGCCTTATGGACAACATGTGCCAGAAAGCTCTCCAGACTTTGATCCAGGAGACTGACCCCGGTGCAGACTATCGGATTGACCGTGCCCTCAACGAGGCCTGTGAGTCTGTCATCCAGACTGCCTGCAAACACATTCGCAACGGAGACCCCATGATCTTGTCTTGCCTGATGGAGCATCTCTACACTGATAAGATGGTTGAAGATTGTGAACACAGGTTGCTGGAACTACAGTACTTCATTTCCAGAGACTGGAAGCTGGACCCTATCCTGTACAGGAAGTGTCAGAATGATGCAGCACGTATCTGCCACACACATGGCTGGAATGAGACCAGTGAGTTCATGCCCCCTGGAGCCGTCTTCTCCTGCCTGTACCGCCATGCCTACCGCACAGAGGAGCAGGGCCGACGGTTGTCGCGTGACTGTAAGACGGAGGTGCAGCGAATCCTCCACCAGAGGGCACTAGATGTGAAACTGGACCCAGAATTGCAGAGGCGTTGTATGATTGATCTGGGGAAATGGTGCAGTGAGAAAACTGAACCTGGACAGgaGCTGGAGTGTCTGCAGGATCATTTGGAGGATCTGGGCTCAGACTGTAGAGAGGTTGTGGGTAACCTCACTGAGCTGGAGTCtgaggaCATCCAGATTGAAGCCCTGTTGATCCGAGCATGTGAACCAGTCATCCAGTCCCACTGCCACGAGGTGGCAGATAATCAGATAGACACTGGAGATCTGATGGAGTGTCTTGTGCTCAATAAGCACCAGAAGGAGATGAATGAAAAATGTGCAGTGGGAGTCACTCACTTCCAACTGatcCAAATGAAAGACTTCCGGTTTTCTTACAAGTTTAAGATGGCCTGCAAAGAGGATGTTCTGAAACTCTGTGCTAACATAAAGAAAAAGGTGGATGTGGTAATCTGTCTGAGCACCATGGTCAGGAACGACACTTTGCAGGAGGCAAAAGATCAGCGTGTCTCAATGAAGTGCCGCCGTCAGCTCAGAGTGGAGGAGCTGGAGATGTCAGAAGATATCCGCCTGGACCCAGATCTGTATGAGAGCTGCAGGCAGGACATTAAGGAACATTGTCAGAATGTCGTGTTTGGCAATGCTCAGgtgatTGAGTGTCTGAAGGATACGAAGAGTCGCCTGTTGCCACGATGCCACCAGAAGATCTTTAAACTGCAGGAAACTGAAATGATGGACCCTGAACTTGACTTTCAGCTCATGAGAGTGTGCAAGCAGATGATTAGGCGTTTCTGCTCAGAATCTGATGCCAAGAACATGCTGCAGTGCCtgaaacagaacaagaacaGCGAGCTCATGGACCCCAAGTGCAAGCAGATGATCACCAAGAGACAGATCACTCAGAATACAGATTATCGACTGAACCCAGTGCTGAGGAAGGCCTGTAAGGCTGACATCCCAAAGTTCTGCCAGAACATCCTGAACAAAGCAAAAGATGACAATGAGCTGGAGGGCCAAGTTATCTCATGCCTCAAACTTAAATATGCTGACCAGAGGCTCTCTCCAGACTGTGAAGACCAGATCAGGGTAATTCTGCAGGAATCTGCTTTGGACTACAGATTGGACCCTCAGCTACAAGTGCAGTGCGCAGACGAGATCCCGCGACTGTGTGCAGAGGAGGTAGCCGCACAGGAGCAGACAGGCCAGGTGGAGGAGTGTCTGAAAGTGAACTTGCTGAAGATTAAACATGAGGGCTGCAAAAAGGAGGTACTTAATATTCTGAAGGAAAGTAAGGCTGATATCTTTGTGGACCCAGTACTGCATACAGCCTGTGCTCTGGACATTAAGCACCAGTGTGCTGCTATCCCCCCTGGCAGAGGAAGACAGATGTCTTGTCTGATGGAGGCACTTCAAGATAAGCGTGTAAGACTACAACCAGAGTGTAAGAAGAGATTACAGGACCGCATCGACATGTGGAGCTATGCTGCCAAGGTGGCACCAGCAGAAGGCTTCTCAGACCTGGCCGGTCAGGTCCTCTCCTCCCCTGCTAAGAACTATATCTTGACGACGATGGGCATGTGTGTGGTACTGCTCTTCCTAATGGGGCTGCTGTGCGGCCGCATAACCAAGCGTGTCACCCAGGAACTGAAAGACAGaccaCGAAAATTCTTGTACAGATAATGAGTTACATTCACATACAAGAAAAAGTAAGGACAACACCCTAAACTGATCGTCCTAAGCACTAGTGTTGCAACGTCTCGCAGCCTGATCGAAATCAATATTATTAATTCTGCTTGTTTAATAAATTCCCATCTTCTGTTTTGAAAATTGTGCTGTGCGCTTGTTGAATATTGAAGGTCTGGTCCACTGAAAAGGTTGAgcttttgattaaaaaaagtaacaatatcagtattaaattgtcttaaatttagtTCTGTGCTTGCATTAATTTAGTAGTGTTGTGAGATAAAAACTTAAGCAGCTGCTTAAGAGTCATCGTTGAAACAGTGGTCAATTTTTTTGGAGGACCATTCCTCAAATATTCCTTAAATGAAAATTCAATTTTAAGTGGGTAAATCTGTTAATTCTGCTAAATTACTATCAAATAATTGTCTTAATTTCAGACACACATGCACTCAGATGGTGTAAAAACAAAGTGATTCTACAAATGCTTACTTACTGCTGTGATTTTCTCCCAGTTGACTGTAGACTCATGAactatgagaaaaatgctaaatagCAAAGATGAattttgtttctgtattttttcccagtctacaaatttattaaaagtatTCTCCCCTCAGATCTGATTAAGCCatgtattatacatatataaaacacgctttttttcttgtcttttttcttGGACAATTGTTAATAAAATCAATTTGCTGGTTTGTA

Function

NR:

description
PREDICTED: Golgi apparatus protein 1-like isoform X4

GO: NA

KEGG:

id description
K06816 GLG1, ESL1; golgi apparatus protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007244256.3 True 4235 mRNA 0.48 27 20160901 20191617

Neighbor

gene id symbol gene type direction distance location
rfwd3 rfwd3,LOC107754982,LOC107559137 coding upstream 799 20148662 ~ 20160102 (+)
api5 api5,LOC107696269,LOC107753602,LOC107661449 coding upstream 126104 20027177 ~ 20034797 (+)
prr5l prr5l,LOC107573861 coding upstream 136674 20014235 ~ 20024227 (+)
LOC103023471 LOC108436948,LOC108275266 coding upstream 288189 19859433 ~ 19872712 (+)
LOC103024220 pim3,LOC108436897,LOC108275436,LOC107598820,LOC107573827,LOC107716739,LOC107696273 coding upstream 302066 19854598 ~ 19858835 (+)
tdrd12 NA coding downstream 17664 20209281 ~ 20230000 (+)
LOC103030550 LOC108428435,LOC108274760 coding downstream 62229 20253846 ~ 20276555 (+)
LOC103030013 LOC108428369,LOC107701578,LOC107742623,LOC107559153,LOC107723981,LOC107570647,LOC107688789 coding downstream 86960 20278577 ~ 20284673 (+)
wwox wwox,LOC107559152 coding downstream 98213 20289830 ~ 20632543 (+)
faap24 faap24 coding downstream 685800 20877417 ~ 20880566 (+)
G75131 NA non-coding upstream 38161 20060370 ~ 20122740 (+)
G75034 NA non-coding upstream 355925 19804766 ~ 19804976 (+)
G75033 NA non-coding upstream 361252 19799385 ~ 19799649 (+)
G75026 NA non-coding upstream 395136 19761774 ~ 19765765 (+)
G75017 NA non-coding upstream 427863 19732016 ~ 19733038 (+)
LOC111193104 NA non-coding downstream 93060 20284677 ~ 20288047 (+)
G75184 NA non-coding downstream 260570 20452187 ~ 20452452 (+)
G75192 NA non-coding downstream 384661 20576278 ~ 20577245 (+)
G75300 NA non-coding downstream 648916 20840533 ~ 20840981 (+)
G75309 LOC108428429,LOC108275416,LOC107566260,LOC107682256 non-coding downstream 678093 20869710 ~ 20873881 (+)
LOC103044129 NA other upstream 623284 19527212 ~ 19537617 (+)
tmem17 tmem17,znf774,LOC107678976,LOC107753710 other upstream 698714 19459958 ~ 19462187 (+)
cadps2 NA other upstream 838126 19140149 ~ 19322775 (+)
G74832 NA other upstream 1075345 19082816 ~ 19085556 (+)
LOC103029914 scamp5,scamp5a,LOC108436905,LOC103363822,LOC107395508,LOC107703195 other upstream 1681556 18470704 ~ 18479345 (+)
LOC103028745 NA other downstream 12002 20203619 ~ 20207955 (+)
G75383 morc2,LOC107754332,LOC107701074,LOC107674835 other downstream 831639 21023256 ~ 21025128 (+)
G75391 pus7 other downstream 897005 21088622 ~ 21096906 (+)
mov10l1 NA other downstream 1058850 21250467 ~ 21264776 (+)
LOC103028957 rfx7,LOC108428391,LOC108275305,LOC107695007,LOC107563886,LOC100538179,LOC107741823,LOC100694937 other downstream 2563356 22754973 ~ 22780959 (+)

Expression


Co-expression Network