LOC103030550 (LOC108428435,LOC108274760)


Basic Information

Item Value
gene id LOC103030550
gene name LOC108428435,LOC108274760
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 20253846 ~ 20276555 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007244265.3
CCGCGGCTTCTCTCTCACTCGGATGTATGACTGAGCACTGTATGCCTTTTCAGAACATAATCATTTTGAGTTTATCTGCTGATATCAGTAACATGAGCTCATAAACAGACGAAACTGTAGCAACGGCTGCAGACTCTCTCCCTGTATCCTGCCAACAATAATGGAGAAGTTGCGCATGCGCGCGCGGAGGGGGCGGAGCCGTTGGGGAAAACGGTGAATGGCTGTtgtggctagctagctaatcagATGGCTGAAGAGAAATCCCAAAAGCTTTCTTTTGGGAGGCTAAATAAACACAACCGTCTGTAGTCTGGTGTTTATTTGACACCGTAGGCACTGTATTTGTAGTTTGTAGCCTGTCGTGTCTCGGGCTGTAGTTTGTTTCCCCCTGAGCAGTGGAGAATCCGCTGCTCTGCTCTCATGAGGCACAGGGCTAGTAGCTAGGCACTTGGCTAGCTTAAAGCTAAGTTAGGTTAGTATGCCCTCTGATTTTATATCTCTTCTAAGCACGGATATCGACCTCAATTCCCCTAAATCTCTGTACTCCAAAGAATCCGTGTATGACCTTCTCcctaaagaactgcagcttccccCCACCACACAGGACAAACACACCATGAGCCAGAAGAGCGGTGGAGAGGCAGGTCCTCTTCCCTCTGCAGCCCTGGCCTCAGATGCTGCCACTGCCTCCACTTCCCCTGGAGGGCACAGCAGTGCACTTCCTGCCTCTACCTGTGCCAGCATTCACTCTGCTACTTCAGCTCCAGAGCAGTCTTCCAGGCTCCATGGATGTATCCCTGCAGAGGTGCTGGGAGTGGAGCCTGGTCCAGCCTCTGCCATCAGTGGGGCTGCTGCAGGCGATGGTGTTGGGGTACCAGCCCATCAGAACCAGATGACCCCGTCAAAACGGCGGACCGTCCTGAATATCTCGCCGCCTCCAGAAGACCTGCTGGATGACAGCCGTATGTCCTGCCAGGACGAGCTGGTTCCCAATCCAGACTCGGAGCAGAGCAGCAGCATTTGGATGGATGACTCTGTGTCTAACTTCAGCATGCTGAGTAACAGTTCATACAATGACAATACCGAAGTACCCCGCAAATCCCGGAAGCGTACACCTCGCCAACGGCCAGGCCCAAAACCTGTAGCCAGGGATGAAGCAACCATGGATGTGTTTGATGCAGACAGTGCAAAAGCGCCGCACTTTGTGCTTTCCCAACTTGGCTCAGAAGCAAAGGGCAATCTCAAAGGAAGCACCCTGGAGGTGTCTGGGAGTCAGAAAGGGAGCATTCTTTCAACACAGTATCCACAGAAGAGTGAAGGAAAGGAGCTGAAGATTCTGGTCCAGCCTGAAACGCAGCACAGAGCACGATACCTTACAGAGGGGAGCAGAGGATCTGTCAAAGACTGCACACAACAAGGCTTTCCTACAGTTAAATTGGAAGGTGTGACAGAACCTGTTGTACTCCAAGTGTTTGTCGCTAATGACGCTGGACGTATAAAGCCTCATGGCTTTTATCAAGCCTGTAGAGTGACCGGGCGCAACACGACAGCCTGTAAGGAGGTGGATATTGAAGGGACCACAGTTATTGAAGTAAATCTTGAGCCCAGCAACTCCATGACATTAGCAGTTGACTGTGTTGGCATACTGAAACTGAGGAATGCAGATGTGGAAGCTCGAATAGGTGTCGCTGGATCCAAAAAGAAGAGCACTCGAGCTCGTTTGGCATTTAGAGTCAACATCCCAAGACCAGATGGCTCTGTTCTAACTCTACAGACCCCTTCTTCACCAATTCTCTGTActCAGCCTGCCGGAGTGCCTGAAATTCTCAAGAAGAGTCTTCACAGCTGTCCAGTGACTGGAGGAGAAGAGATATTTATTATTGGCAAGAACTTCCTCAAGGGGACCAAAGTTATTTTTCAGGAAAATGCTGCAGATGATAACTCATGGCAGGCTGAAGCAGAGATTGACATGGAGCTTTTCCATCAAAATCACTTAGTGGTGAAGGTCCCTCCTTTTCACGACTTGACTGTGACCTCCCCTGTGTCAGTTGGGATATGTGTGGTAACGAACGCAGGGAGAACACATGAACTGCAGCCTTTCACGTACACTCCACAGCCAGaaaaaactgATATTTCTGTGAAGTCAGAATTGCCATCAACAGGCAAACCTTGCAACTTTGAAGACCAGGTGACAGCAATGCAAACCGGGGCCAGTAGTCTTAACAATACCTTGATGGCCCCAGTGATATCGATCGTCAAACGTGAAGAAGTCACTCCAATGGAAGTCTCTACCAACCCATCAGCATGCAACATTTTTAAGCCTGCAGAGGTCCTTAATTCAAACCAACAGATTTTGGAAATCACCACGGTCCTTCCCACAAGCAGCAAATCCTTTCCTAGCCCTGTGCCTCTACCCTCCGTTGATGCGCAACAGTCAGCACCCCCAATTTTTGTACCCCCTGAGCCCCTTACTACTATTCAGAAACAAGACATCTCTCCCACGACATCCTTTCAAGTGTCCTTGTCAGAAGACACTACAGTTCTTCAGCCCGTGCCGCCCCAGGTCCCTCAGCAGTTCTTGCGGGAAACTCCAGAGACTCTCTCTCCAGAAGACAACAGTCCGGACGGAACAGGGATGGTGGTTGTAGGGATAGAGTCAAGGCCTCCTGCATCCCAGCAACCCCAGGTCCAGACCCTTCTGCCCCAGGATGAGGTGGCACAGCTAGAAAGAGCAGTGAGGGAGTtgcaagaacaacaacaactgAACTCTGTGCTTTATGGTCCAACACCTTCTGCTGAAAGTCTCCAGCAGCATGTCCAGGAGAACATGAACAGTTTAAGATTGGGTGGAAATGAGAACACAATGACCAAccagcaacagcagcaacaagAACACAGCATATTAGAGAATCTGCAGCAACAGCATCAGAAGGCACTAGTCGATCTCCAGCATCAGCAAACGGTTCTGGAAAATCTGCAGCAGCAACAAAAGGTCTTGGAGAATCTTCAGCAGCATGCTCTAGGAAATCTGCAGCAGCAACAATCGCATCAGAATGTTTTGGAAAACCTGCAGCACCAGAAAGTTCTTGAGAACATTCAGCAGCAGAACTCTTTGGTGAACATGCAACACCAGAAAGTACTTGATAAtctgcaacagcagcagcaacatcaCGAACATCTAGAGAAACTTCAACAAGAGCAACAGCAGGAGGTCTTGGAAAATCTTCAGCAGCAGTTACAATCAGAGCTTCTGCAACCACTCATTCCTATGCAGTGCACACCAAGTTTTTCTGGAGTACCACAGAATCAAATATCTGAGCATCAGGGTACCACGCAAACAGATGGTACTATGTCACAGCCAGCTGATGGTTTCCTCCAGAACTCATCCCAGCAGCCTCAGCAGCAAGCGCTTTTCCAGCAGGCAGGAGGGCTACTGACTATTCAGACGTCCAGCTTCCTTCAGCAGTCACCTTCCCAGTCCTCACCTCCTCAGCAGTTATTTCAGAGTCACGCCCCTCTGACTGATGCACAGAACCCACAGACAGCACTCTTTGGCACTTCCAAGACTACCCAAGTCCAACCAGCTTTGTTTTCGAATACTATGACACTGTTAACAAGCACCAGCTTACCTTCTGAGCAACAGACTCCCTCAACCACGCTTTTCATTTCACAGGGGGTTCTTCCTGCACAAATAACAGCCGACAATACCCAGAaccaacagcaacaacaaatcGCTTTCCTCACGCCCATACAGACGTCTGGTTCGGCACCCCAGACAGTCTCGCTTTTTCAGGGACAACCCCAGTTGTCTGCACCAATGGAACAACAACAGTCTCCGCAGCCACAGCAAATACAAACACCTCAGCAAGCCTCCATTTTCCAGAGTATGTCTACAATAACCCAAAGCCAGGGTCAGCAACAACCACAGACTGGCTTACTCTTCTGTACAACCCCTATTAACCCACAAGACCTGCCACAGACTCTCCTATTCAGCAGTCAGAACCAGGGTCCAATTGGTGGTGACCCACTTCCACAGAATATATTTCAGGACCAGCAGCCCATGCAAGTAGTTCCAAGCTCTGTGAATGTGACAGCAGATAGTTCCACGAACCAATCTACAGTTCCTCCGTCCCAGTCAACACCAAGTCAACAAATTCTCTTCCCCCCAGCCAGTGTGGTCAGTGTGGCCCAGCAGGATGCGTCAGAGCCCATGTCTTTCCAAGATGAGAGCTCTGTTGTGGATGACTCGTCCACCAATATGCCTTCAACTCAGTCAGGACTTTTTCAGGACCAGCAGCCTATGCAGGTTGTCCCCAGCGCCAGTAATGTTGCATCTGTATCTTCTACAGACCAATCCTCTGTCAACATCTTTTTGCCCCAGGCAGCCATTTCAGCACTACAAAGTGGTGTAGGCACTCAAGAGTTACCTCAGGCTGCCACAGCAGCATCCATTTTTAGTGGGCAGGGTGGGGTGGCCATTGGAGGTTTGCAGAGCTCTTCCTCCACATCCAGTCAACAGAATCCTGATCCACTCTTTCAGACAGCGTTGGGGAGCACCCTGAACCAGCCTGTTCAGGCAGGGCAACCAGGCTTGTTTCTGTTTGAAATCCCCACAGAGTGTGGTCAACTTTTAAATTCTCCAGGTCCTGCACTGGCAGATCAGCTTGTGAACATGGGGCATCCTAGTTCAGATCACAACCAGAGCCAGCTTCAGAATAGTGCACAGATTCAGACTTTACTGGACCAGTCCAGCAATCTTGATGAGAAGATTGATGAACTACTAGAACGGTTTCAGGAACAAGGGAAGACACTCCCCAGGGATTTCTTGGAGCAGTAATGATGAATTGAAAGATCACCTTGGTGAGCCTGCTTAAGCTCTATTTTGAGCTTATAAGTGTAAATGTGATGTTATGAAATCTGGAGTGtctgcattttaaaaaacaaaaacaaaaaaagcctttaacattttttgtccATGTAGGCTGTTACAGGTGGATGTAATCATGGTTCGTTCTCATGGGGACCATTAGGGATCCGGCCAATGAATGTCCTGGCAAATCAGCATCTATAAAAATCAGTGATCTATAGAACTATTTAATATCTAAGCatcatgttgttgtttttctccAATTTGTCTTTGCTATTAGACACTATTATCCATCTTACTAAGAGAAACTGACAACTTGAACCACTTAGATCCAACAAATTGGACCGATATATTGTCTATGAATTTTTAGATGATATGTTTAGCACTTTATGGAGCTTCTAAAATGAGACACTCCATTTTAGCTTTCAAGCCATTTGCATCCACCTGTttgcctgtgtctgtctgttttaaagTCTTTAGAGAGGCTTTCCCAGAatggtctctctttttttttttttttttttaatacagtcatATTTACTCTTCATTTTCATAATAACTTGTTTAACAAGCCATGatcattatacatttttattgtcatGATTGTACAGCATTCATCTGTCCTGATCCGTAAGATGtgtaacatttactgtatataaatataaatttgtaTGTAGtcaagatattttttttgttgtttcatcTAATGCATTTTATAAAGAAGAGACCCATCTTTAGTCATTCCTGTCAGGGATGTGTACCATCACTGGTGTAGAGTATGTTAACATTGGTGTCAGCTTAGCCTCGCTGATTAGCCTGAAAGTTGCAAGCTTTCAGTTTGTAAAGCTGCTTGTGGTTTTATTGTGGTAAATCTGGCATAGAATAACTTTAGTGGGTAGAGACAACATGATGAACATCTACCAGAATGCTTAAGTGACAGTGCCAAGGACTGAAATCAAAACCATCAGTGGATCATGATCCAGTTGCTTATCAATAATAGGCTGTACTTGTTGTTACTGTTATTcttactgttattttatattgtcaCTGGCCATTGGAAAACTAAGTAACTCAAAAACAGCACCTTTACAGgaggagagataaaaccttGTTAACTTACAACAGAAGtcaaaagagtaaaaagtgtttttcaggTCAATTCGCAGGATATCTATAAATACATTCTTCAATACATTTTGAGTGTAAGGGACtgcttgtgtgtttaaattaaaaatcattttaattggaAGGTGACTATATGCTCAAGAGATTTAAGTAGTTAAATTGGAAAGCTTGCAGGTTCTCAGGTTTTAGGTCAGCCAAACAGACTATACACATGCATGCCCTTGACATAGTGTGTAAagtttatgtatgttttgtgtgttaACTAGTAGCAAATAGAGCATATTAATATTTGTACTCTGTTACATGAAGATCGgtccatgttttttatattaaatgtattagatGTACTTTTCCAATTGGCTGGCTGCTGAAAATAACATTCATTAATGTGAAGGGTAGATGGGTCATCAattctttcattgtttttttctgacttGGTAAATGAAGTTTTACAGGGTTCATTCTCAACACATTGGCATAGTGGTGTTGCATTGTTTACATTAATAACCATTGTTTTACCATTGTGTAACATTTAGACTGATTATTAGTAAAGAACTCATTCCTAAAGCTTGGCTCTTAGACATTTTGGCCACTTCCTAGAAGACAGTTTTCACAAATATGTCTGTTTGTGTCACATATCTTTATTTTACTCACATCCATCCATATGTTTACATCACCCattgttatatattttgaaGAACCAATACCATGTTAAACATCAATTtgcataattttatttctagaaGTAAAGTTAAACGTTtgtttaaagaaatgtaaattCTCCCAAATGTGCTTTATGTAATCAATTATTTATCTTGACCATTAACTATTTCCCTTATTTGTCCAACATCACTGTATAGATATTTGTTTTCtaattatgtatttaatgtttgtTACAAACTCTGTACAAAGAAGCCTAACTTTTtagttgtggtgtgtgtttgttcttcTGTGTGATATTGGTTTGTAGAACATGTGCTGTCTTTGTAGTAAAGTGTAATCTCTCACCTGTATTAAGTGAgccatacatacagtatttttgtaaGACTGAaattactaaatgtactatgtacatttttaaatcattgaaCTTTGTGTCCCTTCTGCAGTACTGTACTTCATACATCATGTCAATGGGGAGAAAATTCGCCCCCATCACTGTGCTATGAAGGAGGCGTTCTGTGTGGCTCGTGGAGCTGAATTACTGGCAGTCTAAGACATGAAAAAAGGAGAGGTTTTTACAGAGTATATAGGCTAATGCTTTGGAAGATATGTTCCATACTAAGCcatataaacaaatcagtaactctGATTTCAGAGTGAAAGAATGTGCTTTTACCTCATGATGTAAGAATATTCACACTACATCTAACTAAGGACCAATTAAGATGACAACTTTTCTCTCAGAATATGGCAGCAGAACTCTTTATGTCTTTTTGAATGATATATGGATGATATCTGTGAGTTCCTGTTTTTTTGAGTACTGATGTTCCAGCTTAGGTCAAAATACTGTCATACTGTACGTGCAACCGAAAACAAGcagaaacagaacaaaaacagaacatttcTGCGCAATCCATCATTGTAAGAACTACTTAAACTACTTAAACTGTTGTTAGGATACGCAGATATTTATTCTACTCTCCATTGTATTGTGCTATTTTTATTGGAAGTACTTTGTGCCTTTGCAAGCCGTTTCCCCTTACTTCTAAAGTACCTTTGTAACTAATTACACATTTTGGGGTTTGTAGTTAAACTTTAAAGTGATCCAAAAGTTAAAAACTGCAAGATTTCTAATGATATGTGTAGTTTGTCTCGTCTAAGTGTTGTTTACAGATCCATCAAATGCAGAAGTGCATTTGAGCTTTATATCATTAAACTGCTATGCAGCTCAACcatttattatctttttctttcctttttttttccctttttccctCCGTTTAATTTAATGATTGGTTGTTGCCTCCTGAGATTTGCCAAAAAAggtacaaaacagaaaaaaagacagtaCTTTTGATAGTGATCTCATAAAAAAGGCACAGTGAagtaacagataaaaaaaatttaaacaacaaCCTTAGAGCGCTTTCCCCACTCACCAGCAGTTTGTGTGCTCTGTGTATGAGTGTGAATGTTTTGAGTGCTTCTTACAACTCATTTTCATTCTTAATATGCATTTTTTACTATGATTTGCTTTTGTTTGATGTGAATAATATTCTTCACTTTTGAAGTCATAGGTTTAACAGTTTACTTTTGAGTGTGTCTAAGTATCGTGTGAAGATTCATGTGAAGTAACatttaacatataaatatacttgtattttgctttaaatCAGTACATTTGTATACTCTTGCAGTTCTATTTCTGTAAAACGTGCTGCTATCTATATGAATAAAGATAGACCTGACATTT

Function

NR:

description
PREDICTED: nuclear factor of activated T-cells 5-like isoform X1

GO: NA

KEGG:

id description
K17335 NFAT5; nuclear factor of activated T-cells 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007244265.3 True 8408 mRNA 0.43 13 20253846 20276555

Neighbor

gene id symbol gene type direction distance location
tdrd12 NA coding upstream 23846 20209281 ~ 20230000 (+)
LOC103028218 LOC108428438,LOC108274991,LOC107559147 coding upstream 62229 20160901 ~ 20191617 (+)
rfwd3 rfwd3,LOC107754982,LOC107559137 coding upstream 93744 20148662 ~ 20160102 (+)
api5 api5,LOC107696269,LOC107753602,LOC107661449 coding upstream 219049 20027177 ~ 20034797 (+)
prr5l prr5l,LOC107573861 coding upstream 229619 20014235 ~ 20024227 (+)
LOC103030013 LOC108428369,LOC107701578,LOC107742623,LOC107559153,LOC107723981,LOC107570647,LOC107688789 coding downstream 2022 20278577 ~ 20284673 (+)
wwox wwox,LOC107559152 coding downstream 13275 20289830 ~ 20632543 (+)
faap24 faap24 coding downstream 600862 20877417 ~ 20880566 (+)
LOC103033048 slc7a10b,slc7a10,LOC108428368,LOC108274532,LOC107679961,LOC107752484,LOC105900738,LOC107555706 coding downstream 605275 20881830 ~ 20895098 (+)
ccdc34 NA coding downstream 636226 20912781 ~ 20915900 (+)
G75131 NA non-coding upstream 131106 20060370 ~ 20122740 (+)
G75034 NA non-coding upstream 448870 19804766 ~ 19804976 (+)
G75033 NA non-coding upstream 454197 19799385 ~ 19799649 (+)
G75026 NA non-coding upstream 488081 19761774 ~ 19765765 (+)
G75017 NA non-coding upstream 520808 19732016 ~ 19733038 (+)
LOC111193104 NA non-coding downstream 8122 20284677 ~ 20288047 (+)
G75184 NA non-coding downstream 175632 20452187 ~ 20452452 (+)
G75192 NA non-coding downstream 299723 20576278 ~ 20577245 (+)
G75300 NA non-coding downstream 563978 20840533 ~ 20840981 (+)
G75309 LOC108428429,LOC108275416,LOC107566260,LOC107682256 non-coding downstream 593155 20869710 ~ 20873881 (+)
LOC103028745 NA other upstream 45891 20203619 ~ 20207955 (+)
LOC103044129 NA other upstream 716229 19527212 ~ 19537617 (+)
tmem17 tmem17,znf774,LOC107678976,LOC107753710 other upstream 791659 19459958 ~ 19462187 (+)
cadps2 NA other upstream 931071 19140149 ~ 19322775 (+)
G74832 NA other upstream 1168290 19082816 ~ 19085556 (+)
G75383 morc2,LOC107754332,LOC107701074,LOC107674835 other downstream 746701 21023256 ~ 21025128 (+)
G75391 pus7 other downstream 812067 21088622 ~ 21096906 (+)
mov10l1 NA other downstream 973912 21250467 ~ 21264776 (+)
LOC103028957 rfx7,LOC108428391,LOC108275305,LOC107695007,LOC107563886,LOC100538179,LOC107741823,LOC100694937 other downstream 2478418 22754973 ~ 22780959 (+)
LOC103047784 LOC108428360,LOC108274708 other downstream 2505180 22781735 ~ 22815522 (+)

Expression


Co-expression Network