LOC103033048 (slc7a10b,slc7a10,LOC108428368,LOC108274532,LOC107679961,LOC107752484,LOC105900738,LOC107555706)


Basic Information

Item Value
gene id LOC103033048
gene name slc7a10b,slc7a10,LOC108428368,LOC108274532,LOC107679961,LOC107752484,LOC105900738,LOC107555706
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 20881830 ~ 20895098 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007244271.3
GGAAGACCACCACAAGATGGAGCCAATGAtccaataaatgtttttaggcCAAAAAGACAATTGTTGATTGTTGGACAAATTGCATTAGAGGTCTATGTGCATGTGACTTTACCCTATTTAAGATTTACAGCCATGTTATAGTGTCTTTGTACTAGCATTAAACTAAACTTACTGGTTAAATGTGGACAGTCATATATGAAATTTGCCAATATCTGCTGCCTGATTTTAAACTTAACGTAAACGTAAATTGTCATGATGAGTACTGGATGTTGAACTATATCGCTGTTAACCCTGTAATActtgatcattttatcatcCTCAAGGGCAAGTCAGATGGCTTCTGGGTCCATCTGATACTGAAGGCACTTGGTGAGTATGCTCTCACTGTCTCAATTACCAATTACTCCCTCATTGAGCAATCTGTCTTTCCCTCAATTTCTCTCCCGCTTTTCTCTGTGGCTCTTGTGATGTATTGGTTTTCTGCTCGACTTCTTCCTTTAAGTGCCGCACACTGCTGGCAGTGTTTTGGCCTTCCTGCCGGCTTACAAAGCAGCCCCCCTTTTAACAGGCTCACTGGCGGGGATCAGCTGAATCCTGGGCCCTTTATTGTGCCACCAGTGTTGTTAGCCAGGGAAAAGCTGCAGCACAAATTCACGACTTGACTTCCTAAATTCCACGCCAGGGATCCTTTCAGGGTGAATAAGGGTGTGAGGAAGCCTCTCTATTGTAAAACACATGTCCCAGTGCTCCTGAGATCTCTTCACACTTTTCTGATGCTTTCTTTTTGCCTCCTCTGTGTGGTGCCCCATCATGAGCATCTATCTATCCTAGCAGGAAGTACATCAACCTAACAACAGTCCTGCAGGTAGCTTTAGAGCTTTAGAAAACCAGTCCGGGATATTGTAAACTTAACTGTACTTAATTTTTTCTGCCACATCAACTCGCATCAAGTCTagcaagaaaataaattagatgTTTTGATTCCGcccataaatatataatataatattttacgtGATTCGTTAAATACAATGTCTGACCTCTGACTTTTCACATACAGCTCATAACTGATTTCCCAATTGTCAActgagcacatttttttttattatcaaagCTGAACCACTATTGAAAGCTGAACCATTATTCTGACTGATCTTCAGCAcatgaggaacatagtgagcaGGGCCATGTGTGCTAGATGTGAGAGAACAAGAAATCACTGTGCCAAGCATGGTGACAGGGGACCCCTGCTTTAGAAGCAGGGAAGTGGGGGGAGGAACTGGAGTTTTGGACTTTTTTAAGAGAAAGTCAAGCTGGTATTGACCCTGCAGCAGTGTTTCTCCACCATGGTTCTGGGGCCCActgttctgcacattttagGCATTTAAACTgtgttacatttaatttaataatagtcTGTTAATAAGCTAATTGGTTTGATAAACaggtgtgtaaatgtgctgAGAGAAAACACCAAAAAGTGCATGGCTTTGGGCCTCCAGCGCCAGAGCTGAGAAGAAACACTGCCCTACAGCATACAGTACATAGCCGCACACCTTTGCAAGAGACTCTCCACTGAGGGTCAGTGCAGGGGCCCAGTCAGTCCCTGCAGATGGTCTCACAAGACGAGCTTCACaccttttaaaagaaatgtctaaaaaaaacgAGTCAGTCGGACAGGACGTGAACCTTTAAACCCGAGCTACTCGTCGCTGAATCAATCACACACCATGTCCTCAAACGGAGCAGCCGAGCGGTAGTTAGCATTCAGTCCTGGGCAGCGGTGGAGGCTGCGCATGCGCGTCCCTTTCACCGTGCCTGAATGCTGTGAAGGGTTTGAGGGGAGAGACCCCGGGGCTGCTTTACTTACGGACTACTGAAATGGATGGAGCGGAGCGGAAAAGCGGCGTCCGCGCCAGGCCAGAGCCACAGGCTCCGAGGAGCACCATGAAAGACAGGAAGGTAAAGGAGGACACGGTCCCAGAGAGAGTGACCCTCAAAAAAGAGATAGGACTGATGAGCGCCTGCACTATTATTATAGGTAACATAATTGGTTCAGGAATCTTCATCTCTCCTAAAGGGGTTCTAGAGCACTCGGGCTCTGTTGGCTTGGCGTTGGTGGTGTGGGTGTTAGGAGGTGGCATTGCTGCTCTGGGCTCTCTCTGCTATGCTGAGCTTGGTGTCACCATTCCCAAGTCAGGGGGGGACTACTCGTATGTTACAGAGATTTTTGGAGGCCTTGTAGGGTTCCTTCTGTTATGGAGTGCTGTGCTGATCATGTATCCCACCACTTTGGCTGTCATAGCCCTCACCTTCTCCAACTATGTCCTGCAGCCTGTTTTTCCTAACTGTGTCCCTCCCTATATGGCCATACGAATGCTCTCTGCTACCTGCATTTTATTTCTGACATGGGTTAACTGCTTCAGTGTGCGTCTAGCCACTCGCATCCAGGATATCTTCACTGTAGGGAAGCTGATGGCCCTGGGCCTCATCATAGCTGTGGGAATGGTGCAGATCTATAAAGGTAACTATGAGGGTCTTACTCCACAAATAGCATTCGACTTCAGTGGCAATTCTCCATCAGTGGGGCAGATTGCTCTGGCTTTCCTTCAGGCCTCATTTGCTTTCAGTGGCTGGAACTTTCTCAATTATGTCACAGAAGAGGTGGTGGATCCCAGGAGGAATCTTCCACGTGCTATTTACATCTCCATTCCGCTGGTTACCTTTGTGTACACGCTCACCAATATCGCCTACTTCTCCTCCATGTCTCCAGAAGAGCTGCTTTCCTCTAATGCTGTGGCTGTAACATTTGGGGAAAAGTTGCTTGGAATGTTCTCTACCATCATGCCCATCTCTGTGGCGCTGTCCACCTTTGGAGGAATTAACGGCTACCTCTTCACCTCATCCAGGCTTTGTTTCTCTGGTGCAAGAGAAGGACACTTACCCAGCTTACTGGCTATGATTCACTTCAAAAGCTGCACCCCTATCCCAGCTCTGCTTGTTTGTTGCACTGCCACAATCGTAATCATGTGCATTGGTGAAACACACAACCTCATAAACTATGTGTCCTTCATCAACTACCTCTCTTATGGAGTCACCATTGCTGGCTTGCTGTACTACAGATGGAAGAAGCCAAACCTGTACAGGCCTATCAAGGTGAGTCTGCTGGTTCCTATGAGCTATCTGCTTTTCTGGGCCCTCCTGCTGGGTTTCAGCTTGCACTCAGAGCCTGTGGTCTGTGGGGTGGGTTTGGTCATCATGCTTACTGGAGTGCCTGTATACTTTCTGGGAGTATACTGGAAAGACAAGCCAAAGTGCATCTATGACTTCATTGAGTGGGCCACATATCTGGGTCAGAGGGTGTTTTTTGTGGTTTTCCCCCACATTGAACCTATTGAAATCCTGACACCAACAGAATGGACTGACAAGTCTTCCATCACAAGCAAGGCCTCTGGACCTGTTTGACttttctatatatgtatattgttttgtttgtttgtccattttattctgtttttcattTAGACTCTAAAAATGGGTCCCCCTTATTTTAAGGCCCTAGAATTCAGTTCTTGggtacatttttaaatgcagaTGTCCATGTcttgtacaatatatattttgtatgtacTGTTACACACAATTTATATTGTCACGGTTTTATCTCCTCAAATAGACTTAAACAGTCATTTATAAAGACGTTCTAACCTgctgtttaatatatttaaaaattatctcGGTTTcaatctatattttttattgtgccTTACCAGGGAAGATATACTGCAACTAGTAATACGGAATTGTACTGCAACTGTACTTATGCTTAAAGCCTAAtgctttatctgaggagctatATCCTGATCAGCATTTCAGCCGTTTAATGTTAGTTAAtaacttttagttttgtttttttttgtttttttttagacattaattTAATGACACATAAGCTGTAGTgctaaacatatatttattgcTATATGTAATTCAGTGAAGTCACTGCATTACAGCATTGGTTACCTCTTACAAGAAAAAATTACAGCTAAAAATTGTGAGATCGGAGATACATGTAATAAAAGTAAGCTCAGCATCATAGCTCACATTCACATTTTTGAGAGCAGTAAGAACATTCTTTACCTTCTAATGTTTAATCTGTGTTATATGTCCTTAAATATTTCTTAAACGTATAATTGTATTCTTGAACTTTGTaccatttaaaataatgcatttgAGTAACTTCCCTTGATAGAGCATGGTCATATCGCCCTACAAACACAGCAGTTGTCTACAAAAACAAATTGCACTAACAAATGCAGACTGGACGATTACAAATTACCCatgttaaaatattctaatGTCTAAGTATGTCTAATGAAATGTGATATACATATGTATTCTTTATGAGCACCCTTTCACAGAAAGCTTTACCATGTAAGCTTTTGTCCACCTTCTCCAGCAACACTGCCAATACAAGACCACCGGTAGTCTGTTTGCTGTAAATAGTTTGTTTATGAAAACAAGCAGAGGGAAATGGAGCTATTAGACCCAACCTGGAAATGAATGAATAGATGAGTCTGCTAGCTCTGTATCCCTGTACTGTAAATAGTTATGCTTGTAATAATGCACATGGAGCTAAAACACCTCACACGGAAATCAAGAGGACACACTGCACTTTTTCGGAGTTGTATATTTTTACAACTTACTCATTTTTGCCTATGCAGACTATTGAGTTTGCTGTGGTTAGAAATGAGATTTGAgatcataaattatttgtaaagtttattaaacagTGGAAGAGGCATGCTCTTGTTGAACTAGGTGTTTTCTGGTCCTTCATCTTTTTGTAAATGAAATGAGCGGTTTAACAGTTACAGCTCGGTGAATAAAGGATGAATAACGCTTT

Function

symbol description
slc7a10b Predicted to enable L-amino acid transmembrane transporter activity and neutral amino acid transmembrane transporter activity. Predicted to be involved in D-alanine transport; D-serine transport; and amino acid transmembrane transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC7A10 (solute carrier family 7 member 10).
slc7a10 Enables neutral amino acid transmembrane transporter activity. Involved in neutral amino acid transport. Predicted to be located in plasma membrane.

NR:

description
PREDICTED: asc-type amino acid transporter 1-like

GO: NA

KEGG:

id description
K13782 SLC7A10, ASC1; solute carrier family 7 (D/L-type amino acid transporter), member 10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007244271.3 True 4906 mRNA 0.42 11 20881830 20895098

Neighbor

gene id symbol gene type direction distance location
faap24 faap24 coding upstream 1264 20877417 ~ 20880566 (+)
wwox wwox,LOC107559152 coding upstream 249287 20289830 ~ 20632543 (+)
LOC103030013 LOC108428369,LOC107701578,LOC107742623,LOC107559153,LOC107723981,LOC107570647,LOC107688789 coding upstream 597157 20278577 ~ 20284673 (+)
LOC103030550 LOC108428435,LOC108274760 coding upstream 605275 20253846 ~ 20276555 (+)
tdrd12 NA coding upstream 651830 20209281 ~ 20230000 (+)
ccdc34 NA coding downstream 17683 20912781 ~ 20915900 (+)
LOC103034349 LOC108428426,LOC108274949 coding downstream 22408 20917506 ~ 20923676 (+)
ccdc77 ccdc77,LOC107754361 coding downstream 33192 20928290 ~ 20936087 (+)
LOC103037268 incenp,sb:cb986 coding downstream 79692 20974790 ~ 20990577 (+)
LOC103038014 NA coding downstream 96660 20991758 ~ 20998066 (+)
G75309 LOC108428429,LOC108275416,LOC107566260,LOC107682256 non-coding upstream 7949 20869710 ~ 20873881 (+)
G75300 NA non-coding upstream 40849 20840533 ~ 20840981 (+)
G75192 NA non-coding upstream 304585 20576278 ~ 20577245 (+)
G75184 NA non-coding upstream 429378 20452187 ~ 20452452 (+)
LOC111193104 NA non-coding upstream 593783 20284677 ~ 20288047 (+)
G75310 NA non-coding downstream 44253 20939351 ~ 20941050 (+)
G75323 ankrd26,LOC108428422,LOC105913370 non-coding downstream 50515 20945613 ~ 20947024 (+)
G75342 NA non-coding downstream 80869 20975967 ~ 20976313 (+)
G75381 NA non-coding downstream 151717 21046815 ~ 21047280 (+)
G75403 NA non-coding downstream 252710 21147808 ~ 21148349 (+)
LOC103028745 NA other upstream 673875 20203619 ~ 20207955 (+)
LOC103044129 NA other upstream 1344213 19527212 ~ 19537617 (+)
tmem17 tmem17,znf774,LOC107678976,LOC107753710 other upstream 1419643 19459958 ~ 19462187 (+)
cadps2 NA other upstream 1559055 19140149 ~ 19322775 (+)
G74832 NA other upstream 1796274 19082816 ~ 19085556 (+)
G75383 morc2,LOC107754332,LOC107701074,LOC107674835 other downstream 128158 21023256 ~ 21025128 (+)
G75391 pus7 other downstream 193524 21088622 ~ 21096906 (+)
mov10l1 NA other downstream 355369 21250467 ~ 21264776 (+)
LOC103028957 rfx7,LOC108428391,LOC108275305,LOC107695007,LOC107563886,LOC100538179,LOC107741823,LOC100694937 other downstream 1859875 22754973 ~ 22780959 (+)
LOC103047784 LOC108428360,LOC108274708 other downstream 1886637 22781735 ~ 22815522 (+)

Expression


Co-expression Network