ccdc34


Basic Information

Item Value
gene id ccdc34
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 20912781 ~ 20915900 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007244274.3
GCGTGCTTGGCGCAGTGGGGGCGGGACTATATGAGAAGCTGGTAGGTTAAACACAACAATCCGAGAGTCTCTTACTGCTGAATTAACCTATTTTACTTCTCCACAAACACAGGTTTACGATGTCAGCCTTTCAATCAGCTTCATCTAAAAGTTTTACCTCAACCCCACTCAAGAGTAAATCTACCGTCCCAAAGAGTATCCCCAGAAGCAAGAGTGTGGAATCAACCGGCGACTCAACCTACTCTCTCCTTTCACCTATTTACCATGACAGTTTTGAATTTTCAGATGAAGAACATGAAGAGGCACCGAAATGCACTCAGCCAGCTGACAACTCTTTTCACACATTGAATGAAACCACATTATCAGTCAGTCCTAATAGAAATGAGTCTGAGTCACTTCTGGCAATGAACACGCCTGGAAAGTTAAATTTGAGTGCATGGGAGCAGTGGATTGTGAGTAAGGCGCAAGAAGAGAGAAGCAAAATGCAACAGAAAGCTTTAGAGCAACAAGCTTTAGAAGAAAAGAAAGCGcaagaagaaaaagataaacagagaaaaaaggcaGTCAATGAGTCTAAAATTCAGGAGTGGCTCCAAATGAAGAATACTCAGGAAAATGAAGATAAGCTTTGTAAGGAGTcccagaaaacaaaagaaatgctaCATGAGGAAAAGAAACGGTTAGAGATCGAAAGAAAAGCCCAAGAAAAATACAAAGAGTGGCTTCAGAAGAAAAGAATAGAGGAAACCGAGAGGAAGCTTAAAGAGCAAGAGGAAAGATCCAGAAGAGAAAGGGAGGAAAGAGAGCGGAAAGAGATGGCAGAGGAGAAGTTTAAAGAGTGGCTTAAGAGCATTAagcacaaagacagacataaaCGTCAGCCATCAGCAGGTTCAGCCGGTGGTTATGATCATCTGAACTACCCATCCCCCAGTTTTGTGAACCCAATCCCATGGAAGCCCATTCATGTCCCCCAGCAAAACACAACACCCAGAAAGAACCCAGCACGCAGAAAACAGCCAGGTCTACCAAAATATCAGTTGACTCCATGCCTTAGTTACAAACCCAAAGACACCATTAGTTTTGCGTGCAAGAGGCGGTGacattttatgttgcactgtttaACCGGATCAACTGGGAGAGgtattcatcattttaaagacTGGACCAGTGGAGAAATTATTGTTTATGTGGAGTTATGAAATGGTGTTAAGTAACTCCTCAGACTTTCCATAAAGTCAGACAGTTTTCATTTTGTATGATTAATAGATATGGTGCGTACATA
>XM_015604493.2
CGCGGGATGATTGACGTGTGCGTGTTGCGTGCTTGGCGCAGTGGGGGCGGGACTATATGAGAAGCTGGTTTACGATGTCAGCCTTTCAATCAGCTTCATCTAAAAGTTTTACCTCAACCCCACTCAAGAGTAAATCTACCGTCCCAAAGAGTATCCCCAGAAGCAAGAGTGTGGAATCAACCGGCGACTCAACCTACTCTCTCCTTTCACCTATTTACCATGACAGTTTTGAATTTTCAGATGAAGAACATGAAGAGGCACCGAAATGCACTCAGCCAGCTGACAACTCTTTTCACACATTGAATGAAACCACATTATCAGTCAGTCCTAATAGAAATGAGTCTGAGTCACTTCTGGCAATGAACACGCCTGGAAAGTTAAATTTGAGTGCATGGGAGCAGTGGATTGTGAGTAAGGCGCAAGAAGAGAGAAGCAAAATGCAACAGAAAGCTTTAGAGCAACAAGCTTTAGAAGAAAAGAAAGCGcaagaagaaaaagataaacagagaaaaaaggcaGTCAATGAGTCTAAAATTCAGGAGTGGCTCCAAATGAAGAATACTCAGGAAAATGAAGATAAGCTTTGTAAGGAGTcccagaaaacaaaagaaatgctaCATGAGGAAAAGAAACGGTTAGAGATCGAAAGAAAAGCCCAAGAAAAATACAAAGAGTGGCTTCAGAAGAAAAGAATAGAGGAAACCGAGAGGAAGCTTAAAGAGCAAGAGGAAAGATCCAGAAGAGAAAGGGAGGAAAGAGAGCGGAAAGAGATGGCAGAGGAGAAGTTTAAAGAGTGGCTTAAGAGCATTAagcacaaagacagacataaaCGTCAGCCATCAGCAGGTTCAGCCGGTGGTTATGATCATCTGAACTACCCATCCCCCAGTTTTGTGAACCCAATCCCATGGAAGCCCATTCATGTCCCCCAGCAAAACACAACACCCAGAAAGAACCCAGCACGCAGAAAACAGCCAGGTCTACCAAAATATCAGTTGACTCCATGCCTTAGTTACAAACCCAAAGACACCATTAGTTTTGCGTGCAAGAGGCGGTGacattttatgttgcactgtttaACCGGATCAACTGGGAGAGgtattcatcattttaaagacTGGACCAGTGGAGAAATTATTGTTTATGTGGAGTTATGAAATGGTGTTAAGTAACTCCTCAGACTTTCCATAAAGTCAGACAGTTTTCATTTTGTATGATTAATAGATATGGTGCGTACATA

Function

GO:

id name namespace
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process

KEGG:

id description
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007244274.3 True 1285 mRNA 0.42 7 20912807 20915900
XM_015604493.2 False 1240 mRNA 0.43 7 20912781 20915900

Neighbor

gene id symbol gene type direction distance location
LOC103033048 slc7a10b,slc7a10,LOC108428368,LOC108274532,LOC107679961,LOC107752484,LOC105900738,LOC107555706 coding upstream 17683 20881830 ~ 20895098 (+)
faap24 faap24 coding upstream 32215 20877417 ~ 20880566 (+)
wwox wwox,LOC107559152 coding upstream 280238 20289830 ~ 20632543 (+)
LOC103030013 LOC108428369,LOC107701578,LOC107742623,LOC107559153,LOC107723981,LOC107570647,LOC107688789 coding upstream 628108 20278577 ~ 20284673 (+)
LOC103030550 LOC108428435,LOC108274760 coding upstream 636226 20253846 ~ 20276555 (+)
LOC103034349 LOC108428426,LOC108274949 coding downstream 1606 20917506 ~ 20923676 (+)
ccdc77 ccdc77,LOC107754361 coding downstream 12390 20928290 ~ 20936087 (+)
LOC103037268 incenp,sb:cb986 coding downstream 58890 20974790 ~ 20990577 (+)
LOC103038014 NA coding downstream 75858 20991758 ~ 20998066 (+)
LOC103046250 LOC103046250,LOC108428357 coding downstream 101554 21017454 ~ 21021871 (+)
G75313 NA non-coding upstream 2537 20887155 ~ 20910244 (+)
G75309 LOC108428429,LOC108275416,LOC107566260,LOC107682256 non-coding upstream 38900 20869710 ~ 20873881 (+)
G75300 NA non-coding upstream 71800 20840533 ~ 20840981 (+)
G75192 NA non-coding upstream 335536 20576278 ~ 20577245 (+)
G75184 NA non-coding upstream 460329 20452187 ~ 20452452 (+)
G75310 NA non-coding downstream 23451 20939351 ~ 20941050 (+)
G75323 ankrd26,LOC108428422,LOC105913370 non-coding downstream 29713 20945613 ~ 20947024 (+)
G75342 NA non-coding downstream 60067 20975967 ~ 20976313 (+)
G75381 NA non-coding downstream 130915 21046815 ~ 21047280 (+)
G75403 NA non-coding downstream 231908 21147808 ~ 21148349 (+)
LOC103028745 NA other upstream 704826 20203619 ~ 20207955 (+)
LOC103044129 NA other upstream 1375164 19527212 ~ 19537617 (+)
tmem17 tmem17,znf774,LOC107678976,LOC107753710 other upstream 1450594 19459958 ~ 19462187 (+)
cadps2 NA other upstream 1590006 19140149 ~ 19322775 (+)
G74832 NA other upstream 1827225 19082816 ~ 19085556 (+)
G75383 morc2,LOC107754332,LOC107701074,LOC107674835 other downstream 107356 21023256 ~ 21025128 (+)
G75391 pus7 other downstream 172722 21088622 ~ 21096906 (+)
mov10l1 NA other downstream 334567 21250467 ~ 21264776 (+)
LOC103028957 rfx7,LOC108428391,LOC108275305,LOC107695007,LOC107563886,LOC100538179,LOC107741823,LOC100694937 other downstream 1839073 22754973 ~ 22780959 (+)
LOC103047784 LOC108428360,LOC108274708 other downstream 1865835 22781735 ~ 22815522 (+)

Expression


Co-expression Network