LOC103034889 (LOC108428424,LOC108274948)


Basic Information

Item Value
gene id LOC103034889
gene name LOC108428424,LOC108274948
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 20923738 ~ 20928274 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007244277.3
GCAACGTATGCGCAGCGTGGCTGGGGCTGAATCAGTTAGCCGGCCGGCGGAAgactattttttgttatttatcgctgtatattttaaatattgtcgGGTTTCCTCAGGTTGcagatttattaaatatatatatatttgtcgtTATACATTCTTAATACGTCTGTCAGGGCCGTCGCCTGCCTTCTATAAACATTAGCTGCCGTGTTATTGTTTTAGaggactttattattatttcattagcAATGCTCTGTAGCTAACGCTGGTTAGCCTAACCAGCAGCCTGCTAGTAAGCTAGCTCCTGCGCTGTGTTGATTAAATCATATCACCAACACGAAGTGATGGCCGAGCTCTTTCCTCGGTTTAATCTGCTGAAACTGGGCTGGAGAGCTCTGAAATTCAGAAAAACATCTCCATTACCGTGCTCAGCTCAGACCAGccgaagcagcagcagcagcagtTGTGGACCCAGCTCATTTGGGTTGCTCTTCGACATTGATGGGGTCCTGGTCCGTGGAAGAACTCCCATTCCTGCAGCTAAGCAGTGCTTTAGGAAACTGGTGGATGGAAATGGAAAGTATAAAGTCCCTGTGGTGTTTGTGACCAATGCAGGCAACTCTATGCGCCAGACCAAAGCTGAACAGTTATCTCATCTTCTAGAAGTAGAGGTGTCACCAGATCAGGTCATGTTGTCCCACAGTCCTTTGCGGGTCTTCACTCAGTTCCATGAGATGTGTGTGCTAGTATCTGGACAGGGGCCGATTTTGGAAGTTGCACAAAATTTGGGTTTTCAAAATGTTGTCACTATAGATATGCTGAGAAAGGCATACCCTCTGCTGGATGTGGTGGATCACAACCGTAGACCCAAAAACGTGGTTCCATCTCCCAAAGAGTTACCACAAATTGAAGCTGTTGTTCTCTTTGGTGAGCCAATCAGGTGGGAGACTAATCTACAGCTAATTATGGATGTTCTGTTGACTAATGGAAGACCAGGAAACCCTGTAACATCCTTGCATTACCCACATATCCCTGTGTTGGCTTGCAATATGGATCTGTTGTGGATGGCAGAAGCAAAGAACCCTCGatttggTCATGGGATGTTCCTAGTTTGTCTGGAGAGTctctataaaaaaattacaggtcATGACTTGCAATATGAAGCTCTGATTGGCAAGCCCAGTGTGGTAACTTACAACTATGCTGAGCTGCTGATCAGACAGCAGGCAGAGAGTCTGGGTTGGACAGAACCAGTTCGGAGACTTTATGCCATTGGGGACAACCCAATGGCTGACATTTATGGCGCAAACCTCTATAACCGCTACCTACAGTCAACACGCTGTGCGAGGGCTCAGGTGCAGGCCCAGGGAGGCATCGCTGGTCAGGTAGCAGGTGATGTTCAGTATGAAACAGTTGATGATGCTAAAAACTCTGGTAAGGTGATGGTGGGGGGCTCATATGAGCATTGTTTGCCAGAGGGATGCAGCTCCATCCTGGTTTGCACAGGCGTCTACAGCCGAGACCAGGAGGACCTGGCCCCTGATCAGACAGTCACAGAGCAGCGTATTTTCCACGGGCATCGGGATTTCCGCTTTGACCCGAGCCTGATCCAGCCCAGGTTTGTGGTTCATGATGTACTAGAGGCTGTGGAGCTGGTCTTCCAGCAAGAGTCCTGTCCCCTTGAGTGAACCAAAGGCTCATCAGACCTACCAAGATTTATTACCTCACACACTGGAGGGTTGGGCAGGTCAAACAGTTGAACAGTTTTGACTGTAACAGCTTATATATGATAAAGGACattgattaatgtaaaaaaaaacatttttataatccaCCACAAAGAAGCCATATAAGCATTAAGACGAAAAGGAAAACAATGTtcaatgtttaaatgttgtgcAACATTGTGCAATCTTTCTTGTTTTAGTCTGTATAATATTATGCCACACttttatattgtgtatttttaaatagacATCAGGTTTACCATCATTTGTCAACACTGTCATCATGCAAATTGTTTTTATCAGATATGCAGGTTgtggagttttattttttattttttaagcttttaaaattgtatgcaaaatgttatattttttgcTCAGCCATACAATGCAATTTTTATttgtagatttaaaaaaagggaTAAATCTTGCCAGATGAATATTGTTTGCCTTGCTATTTGTCAGTTGCTGTTTTAAATTTGATATTGTTCTTTGCTTGTTCTCagccaaaataaatgaaattttgAGAATTCGA
>XM_007244278.3
GCAACGTATGCGCAGCGTGGCTGGGGCTGAATCAGTTAGCCGGCCGGCGGAAgactattttttgttatttatcgctgtatattttaaatattgtcgGGTTTCCTCAGGTTGcagatttattaaatatatatatatttgtcgtTATACATTCTTAATACGTCTGTCAGGGCCGTCGCCTGCCTTCTATAAACATTAGCTGCCGTGTTATTGTTTTAGaggactttattattatttcattagcAATGCTCTGTAGCTAACGCTGGTTAGCCTAACCAGCAGCCTGCTAGTAAGCTAGCTCCTGCGCTGTGTTGATTAAATCATATCACCAACACGAAGTGATGGCCGAGCTCTTTCCTCGGTTTAATCTGCTGAAACTGGGCTGGAGAGCTCTGAAATTCAGAAAAACATCTCCATTACCGTGCTCAGCTCAGACCAGccgaagcagcagcagcagcagtTGTGGACCCAGCTCATTTGGGTTGCTCTTCGACATTGATGGGGTCCTGGTCCGTGGAAGAACTCCCATTCCTGCAGCTAAGCAGTGCTTTAGGAAACTGGTGGATGGAAATGGAAAGTATAAAGTCCCTGTGGTGTTTGTGACCAATGCAGGCAACTCTATGCGCCAGACCAAAGCTGAACAGTTATCTCATCTTCTAGAAGTAGAGGTGTCACCAGATCAGGTCATGTTGTCCCACAGTCCTTTGCGGGTCTTCACTCAGTTCCATGAGATGTGTGTGCTAGTATCTGGACAGGGGCCGATTTTGGAAGTTGCACAAAATTTGGGTTTTCAAAATGTTGTCACTATAGATATGCTGAGAAAGGCATACCCTCTGCTGGATGTGGTGGATCACAACCGTAGACCCAAAAACGTTCCATCTCCCAAAGAGTTACCACAAATTGAAGCTGTTGTTCTCTTTGGTGAGCCAATCAGGTGGGAGACTAATCTACAGCTAATTATGGATGTTCTGTTGACTAATGGAAGACCAGGAAACCCTGTAACATCCTTGCATTACCCACATATCCCTGTGTTGGCTTGCAATATGGATCTGTTGTGGATGGCAGAAGCAAAGAACCCTCGatttggTCATGGGATGTTCCTAGTTTGTCTGGAGAGTctctataaaaaaattacaggtcATGACTTGCAATATGAAGCTCTGATTGGCAAGCCCAGTGTGGTAACTTACAACTATGCTGAGCTGCTGATCAGACAGCAGGCAGAGAGTCTGGGTTGGACAGAACCAGTTCGGAGACTTTATGCCATTGGGGACAACCCAATGGCTGACATTTATGGCGCAAACCTCTATAACCGCTACCTACAGTCAACACGCTGTGCGAGGGCTCAGGTGCAGGCCCAGGGAGGCATCGCTGGTCAGGTAGCAGGTGATGTTCAGTATGAAACAGTTGATGATGCTAAAAACTCTGGTAAGGTGATGGTGGGGGGCTCATATGAGCATTGTTTGCCAGAGGGATGCAGCTCCATCCTGGTTTGCACAGGCGTCTACAGCCGAGACCAGGAGGACCTGGCCCCTGATCAGACAGTCACAGAGCAGCGTATTTTCCACGGGCATCGGGATTTCCGCTTTGACCCGAGCCTGATCCAGCCCAGGTTTGTGGTTCATGATGTACTAGAGGCTGTGGAGCTGGTCTTCCAGCAAGAGTCCTGTCCCCTTGAGTGAACCAAAGGCTCATCAGACCTACCAAGATTTATTACCTCACACACTGGAGGGTTGGGCAGGTCAAACAGTTGAACAGTTTTGACTGTAACAGCTTATATATGATAAAGGACattgattaatgtaaaaaaaaacatttttataatccaCCACAAAGAAGCCATATAAGCATTAAGACGAAAAGGAAAACAATGTtcaatgtttaaatgttgtgcAACATTGTGCAATCTTTCTTGTTTTAGTCTGTATAATATTATGCCACACttttatattgtgtatttttaaatagacATCAGGTTTACCATCATTTGTCAACACTGTCATCATGCAAATTGTTTTTATCAGATATGCAGGTTgtggagttttattttttattttttaagcttttaaaattgtatgcaaaatgttatattttttgcTCAGCCATACAATGCAATTTTTATttgtagatttaaaaaaagggaTAAATCTTGCCAGATGAATATTGTTTGCCTTGCTATTTGTCAGTTGCTGTTTTAAATTTGATATTGTTCTTTGCTTGTTCTCagccaaaataaatgaaattttgAGAATTCGA

Function

NR:

description
PREDICTED: cat eye syndrome critical region protein 5 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007244277.3 True 2256 mRNA 0.43 8 20923738 20928274
XM_007244278.3 False 2253 mRNA 0.43 8 20923738 20928274

Neighbor

gene id symbol gene type direction distance location
LOC103033709 LOC103033709,LOC108428427,LOC105941050,LOC101483816 coding downstream 12880 20908879 ~ 20910858 (-)
LOC103033388 LOC103033709,LOC108428427,LOC105941050,LOC101483816,LOC102290823 coding downstream 18218 20903078 ~ 20905520 (-)
trnat-agu_2 NA coding downstream 27562 20896103 ~ 20896176 (-)
LOC103032734 LOC108428429,LOC108275416,LOC107577622,LOC107566260,LOC107682256 coding downstream 46359 20869687 ~ 20877379 (-)
ankrd27 ankrd27 coding downstream 60423 20840504 ~ 20863315 (-)
LOC103036040 ankrd26,LOC108428422 coding upstream 11644 20939918 ~ 20974749 (-)
LOC103038341 LOC108428358 coding upstream 75779 21004053 ~ 21007646 (-)
morc2 morc2,LOC107674835 coding upstream 93692 21021966 ~ 21042030 (-)
LOC103039177 NA coding upstream 115207 21043481 ~ 21047306 (-)
LOC103041246 cd151,LOC103041246,LOC108410837,LOC107674842,LOC107655143,LOC107561168 coding upstream 143781 21072055 ~ 21084451 (-)
G75357 LOC108428367 non-coding downstream 9652 20912831 ~ 20914086 (-)
G75295 NA non-coding downstream 128779 20794484 ~ 20794959 (-)
G75286 NA non-coding downstream 354381 20568847 ~ 20569357 (-)
G75270 NA non-coding downstream 621193 20301885 ~ 20302545 (-)
G75243 LOC108428369,LOC107701578,LOC107742623,LOC107559153,LOC107723981,LOC107570647,LOC107688789 non-coding downstream 639096 20278476 ~ 20284642 (-)
G75366 NA non-coding upstream 51128 20979402 ~ 20985652 (-)
G75367 NA non-coding upstream 57920 20986194 ~ 20986762 (-)
G75419 NA non-coding upstream 113833 21042107 ~ 21066403 (-)
G75426 chid1,LOC107674841,LOC107655144 non-coding upstream 133184 21061458 ~ 21063620 (-)
G75424 NA non-coding upstream 136074 21064348 ~ 21065147 (-)
LOC103032014 maf,LOC108428434,LOC108274756,LOC102790406,LOC102298902,LOC101477682,LOC102192535,LOC101173775,LOC100702616,LOC107663990,LOC107565340 other downstream 175530 20622641 ~ 20748208 (-)
hsd17b12 hsd17b12,hsd17b12a,LOC107661451,LOC107696265,LOC107573907,LOC107716735,LOC107753600 other downstream 823488 20084428 ~ 20100250 (-)
G75207 api5,LOC107696269,LOC107753602 other downstream 891711 20027162 ~ 20032027 (-)
G75100 LOC108436948,LOC108275266 other downstream 1057756 19859694 ~ 19865982 (-)
G74838 wasl,LOC105896696,LOC108275301 other downstream 1850850 19070938 ~ 19072888 (-)
gatd1 pddc1,LOC102788149 other upstream 137045 21065319 ~ 21071246 (-)
LOC111193105 LOC102794092,LOC108274651,LOC107571202,LOC108428364 other upstream 341230 21269504 ~ 21273017 (-)
LOC103024007 LOC108428399 other upstream 1514462 22442736 ~ 22574013 (-)
LOC103033738 LOC103033738,LOC108444230,LOC106560753,LOC105008418,LOC108274439,LOC107549618,LOC107686877 other upstream 2396303 23324577 ~ 23366216 (-)
LOC103042310 ucmab,ucma,LOC107720768,LOC107569716,LOC107673257,LOC108275358,LOC107559968 other upstream 2898940 23827214 ~ 23833068 (-)

Expression


Co-expression Network