LOC103038014


Basic Information

Item Value
gene id LOC103038014
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 20991758 ~ 20998066 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007244289.3
GTCAAATGGAAAACTCTACGTCATTCCGTCAGTGTACGGCGTTGTCTTGGCGACCcgttatatatttaattttcagtGCAGGGAAACGGACGTCCAGTCAGTAGATTTTTAAGTCTTTTAATCATTATTGGACTTATATAGTTTATTTGTGGTGTGCAGATTATAATGTAGAGTATTATATAGGCAGTAATTCACCTGTTCTTAGCGGATACGTGACTGATATAAAGGCTTTTTGTCCAATCACTGCACTGAGCCGAGGGGAGCGCCAGTTCAGCCGGACTTGTTTAGTTCAGAACGTCATTCGTCAGGGGAGAGCTGGTGGTCGGGGAAATACAACCCAGCTATTTAACCCACAGCGCTGAACAGAGaTGACTCGTCTTGCGGTGGTATGGCTGTGCCTGGCTTTGGTGGCTTCAGCCATGGCAAAACGAGGAGGTGGTGGCTTTAAAGGGGGTTTAAGCTGGGGCAAAGGAGGAAGCTCAAGTAATAAAGGAACCAATACTAAAGGATCATCATCAAGTGGAACACGCTCACAGCCAGCAAATTATCCTCGTCAGCCTCAAGTTCCTAACCAAAATCCACCACCATACCCCGGCACTGGTGGTTCCTCCCCAGGACGAGGGGGTGCTGGAGGATACCCCAATCAAGGGGGATACCCTAATCCTGGACAAGGAGGATACCCAAGGCAGGGAGGATACCCAGCGCAGGGAGGATACCCAGCACAGGGAGGATACCCAGCACAGGGAGGATACCCAGCTCAAGGGGGATACCCAGCTCAGGGAGGTTACCCAGGGCAGGGAAGGTACCCAGCACAGGGAGGATACCCAGCGCAAGGAGGATACCCTGCGCAAGGAGGATACCCAGCTCAGGGAGGTTACCCAGGGCAAGGAAGATACCCAGCACAGGGAGGATACCCAGCACAGGGAGGATACCCAGCGCAAGGAGGATACCCTAACCAGGGAAGGGGTGGAGGGTATCCTTATCCTCAAGGAGGCTCTTACCCTGGCTACCCAGTACGAGGTGCAGCTCAGCCCGGTTCTTATCCCAACCAATATGGTGGTGCAGCAGGTGCAGGAGCATACCCTGGAGCAGCACAGTACCCTTACTGGAACCCCAACAATAAAATTATCAGCCCTCGTTATGGTGGGAACTATGGGCATGGTGGTTATGGATATGCTGGAGCTGGAGGATCTCCTTTTGCCCAGTCTGTTCATAATATGGGAATGGGGCCCTCTATTAAGTCAAAGGGGTTTGGTAGGCAAGCAGTAATGGCCGCTGGAGTTGGTGCAGTGGCAGGCATGGCATTAGGTTATGGCCTGGGCAGTTTCCCACGTCCACGTTTTATGTTTCACAGCCCACAGGAAGAATACTATTATAACCACTACATGTACAGGCGATATGGCACTAGACCAGCTGATGCTAACACAAACCCCAACTCTCCAGGTAGTGAGCCAGGTGATTCTGGATCAAATCCTGCTGGATCAGAAGCAGTTAATCCTTACAATATATTCCAAAATCCTCCACCACAGTCCTATGATAGGTACATGGACACCTGTATGAACAGAACAGACTTGTTGCGAGGGGAGCAGAGTGGCAGAAACAAGAGAGCTGCTGAAGAATCACAGGCTCCGAATCCATCAGACACTGAGCAAGTTCAAGGAGATAATCAAAACAGTCCACAAGAAGACAAGACGTCAGCCAAAGAATCTGAAGAGGTTCAGGTGTCAGATAGCAATGTTCAGAGTAGAGGCACAGAAGTAGAAACCAAGACAAACAACAATACAGAAGTACCTCCACCTTTTGCCGAAAAGCTTACTGGTGCTACGATGTCTCCTCAATCTCAGCAGGACATGGAAGAAGATGATACAGTAAGCATAATGGAGATTGGCTATCCCGCACTGATTGAGCAAATGAAAGCACGTCGCTGTATTGACCTTTACATGGCTTATGCAGAGCACCATGCTGCTCAGCAGCAGACCCAGGAACGTAGCGGTGGTGAGGGTACACCTGCAGGGGGCGGAGAGCAACAAAGACCCCTTAACCATGGGGTCATACTAGTTCTGAGCAGCATCATATCCCTTCTCGTCAGCTCTCTGCTGTTACACTGATCGTAGTAAGACACTATGTTTATAGAACCTACTCTACATCTTCTTTGCAAGTTGATACAATGTTCAGTTAACTTTAGGAAAATAATCAGTTCCCTAAGAGGCAGACAGGCAGTCATTTGAAAAGTTCTAACACTGAGCCATTAGAAGATGTGAATTCCTAGTGTTGTTTATACAAAAATAACTGGGGAATTGGGTTATAAGGCCATTTTTAAGAATATGTTATGCTGTCCACTGCAGTCAATGCTGGACATAATTGCTATGGGATAAATGCATGAGACAAGGCAATCCCAATGCTTTTATATAACAACTTCTGAAACCATTCTGATGGCCACTGTCTAAATGACTACTTTTCAAAGCTGAAGGTGTAACATAGTTACATTTGTCAGCATGACATACACTTTGTAAGATGCTAAATCTTCATCACTGCCATGTCATTATGATCATCACAACCTCACTGCATGAGATTGTATGTGGGCTACTGCACCCCTTATTTAAACCCCTCTGCATGGCATCTTTATTtctgcaaacacaaatatactTGGCAAAGGGATTGAATTGTGTAACTACTGAAAGAGGCATACATTTTCTACAGAATACGTTTTCTTTGTTTGATGAatgtatttagttatttaaactCACAGCGGTAGTGATTTTAGCTGATATTTATAACCCAGgctcatatatttatttatttatttattgttagcACATATCATAGTATactttttcttttgtgttttaagCACATTTGTGTGTTATGACATGAATTCTCCTTGTATTAAGGATACATGGTTGAATCTGGGACTGCTGAGCTATTGTCTTAGTAGGGCATAAAATAGTTCAACCTTatactgtttaatataaaatgtatgtcaAGATTATTctgggggctctgagtggtccagcatgctaggtgctgccactatgatcaggagatcactggtttgaatcctgttcatgtagcttgccatcagctaccggagccttGAGGGAGCAcaactggtcttgctctctctgggtgggtagatgccgCTCTCTCCCCACAAGTAACCATAAAGGGtaatgtcaatcagcacaaggcgtctgtgagctgatgtatcagaaccgagtcgcttggctttcctccgagtgcgctggaggctactcggcaatgcttcattagcagcagttcaaaaagaggcggtggctgacgaCGTGTCAGAGGAGGTATttgctagttttcaccctcctggtgttggtgtattactagtgatggggggagtgctgatgagtgggttgggtaattggccttgtaaattgggggaaaatgggggaaaaaaatttaaatagaatGATTAATAAGATTATACTAAGCTGTATGCAGTAAACAGTATGAATGTACATACATCGATCCGCCATAACATGAATACCACCCCTAATTTCCTTAATATAGTGTAGATCTGGCTCATTCTATTAAAACAGCTCTGTCGAGGTATGGACTCCACAGGACCTCCACAAGGTGTCCTGTGGTATTTGGCACCAAGGCTGTTCATGCCGACCCTTTAACGTCCTCACTAAGAAACAtcattgaaatatttttataaagtgtATATTGTTTACCATTTCATATTTCCATTACCTAACCCTCTGAAACTAATATGCATACCTTCAAAAATAAAGTCCACCCGAACAATTCACAAATGTGGAGGAATTTATCTATGAGTTTTGAAAAGGATAAAAAGAATTATCGAAAGACACAGTGACcccttttttgtatttcttaagCTGTACATGCATCCGCTGATTGGTAGAGATGGCACAGTCAGGTTAAATTAAGTTCAACacttttttggaaaatattgtgaattaaaatgttttctatCAAAAGGTTAGCAGAACATTAAAGGGTTAAGTTCTGTTAGTTGAATCTCTTCAGTAAACTTTGAGTACCCATGACCCTGATGCTGGTTTGCATTGTTATTCCAATGTTATTCACTTCACATGTCAGTGGTTTTATTGTTATGGCAGGTCAGTGTATAAATACTGTGTGAACTCCaggtttgatttatttttgaaagatgtttaattttttttattattcactttattcacactgtttgtttattatttaattttcctgTATGTGCTATAACCTGCTGTTAATGCACTTAGGAATTTTGTGTCATGTGATTTTGAATGGTGTGCTTTGTCTGTGGAAGCATAAAAATTAGCTTACTACTCTTTGATGCCTTGTAACAAATTTGGAATTGTACTGTGTTGCTGTGTTTAAATGTCTGCGATAACTGCAATACTAGCAGTATCAAAAGGTAATGTCCCCTGTAATCAGTGTACAGtacaatttcacctgctgtaaTTGGCACTGTTCCTCTGTCTATGCTAAAGTTTCAATTAAACTTTTGACTAAtctacattca

Function

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0048854 brain morphogenesis biological_process
GO:2000310 regulation of NMDA receptor activity biological_process
GO:0021731 trigeminal motor nucleus development biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007244289.3 True 4522 mRNA 0.43 2 20991758 20998066

Neighbor

gene id symbol gene type direction distance location
LOC103037268 incenp,sb:cb986 coding upstream 1181 20974790 ~ 20990577 (+)
ccdc77 ccdc77,LOC107754361 coding upstream 55671 20928290 ~ 20936087 (+)
LOC103034349 LOC108428426,LOC108274949 coding upstream 68082 20917506 ~ 20923676 (+)
ccdc34 NA coding upstream 75858 20912781 ~ 20915900 (+)
LOC103033048 slc7a10b,slc7a10,LOC108428368,LOC108274532,LOC107679961,LOC107752484,LOC105900738,LOC107555706 coding upstream 96660 20881830 ~ 20895098 (+)
LOC103046250 LOC103046250,LOC108428357 coding downstream 19388 21017454 ~ 21021871 (+)
thoc5 thoc5 coding downstream 49830 21047896 ~ 21057840 (+)
chid1 chid1,LOC107655144,LOC107674841 coding downstream 61366 21059432 ~ 21064841 (+)
srpk2 LOC108428417,LOC106560984,LOC108248824 coding downstream 102343 21100409 ~ 21187436 (+)
LOC103044722 LOC108428364 coding downstream 272672 21270738 ~ 21273031 (+)
G75342 NA non-coding upstream 15445 20975967 ~ 20976313 (+)
G75323 ankrd26,LOC108428422,LOC105913370 non-coding upstream 44734 20945613 ~ 20947024 (+)
G75310 NA non-coding upstream 50708 20939351 ~ 20941050 (+)
G75313 NA non-coding upstream 81514 20887155 ~ 20910244 (+)
G75309 LOC108428429,LOC108275416,LOC107566260,LOC107682256 non-coding upstream 117877 20869710 ~ 20873881 (+)
G75381 NA non-coding downstream 48749 21046815 ~ 21047280 (+)
G75403 NA non-coding downstream 149742 21147808 ~ 21148349 (+)
G75390 rps17,rs17,LOC106527967,LOC107389132,LOC103042467 non-coding downstream 192700 21190766 ~ 21195771 (+)
G75405 NA non-coding downstream 201221 21199287 ~ 21204023 (+)
G75413 kiaa0101 non-coding downstream 238526 21236592 ~ 21238466 (+)
LOC103028745 NA other upstream 783803 20203619 ~ 20207955 (+)
LOC103044129 NA other upstream 1454141 19527212 ~ 19537617 (+)
tmem17 tmem17,znf774,LOC107678976,LOC107753710 other upstream 1529571 19459958 ~ 19462187 (+)
cadps2 NA other upstream 1668983 19140149 ~ 19322775 (+)
G74832 NA other upstream 1906202 19082816 ~ 19085556 (+)
G75383 morc2,LOC107754332,LOC107701074,LOC107674835 other downstream 25190 21023256 ~ 21025128 (+)
G75391 pus7 other downstream 90556 21088622 ~ 21096906 (+)
mov10l1 NA other downstream 252401 21250467 ~ 21264776 (+)
LOC103028957 rfx7,LOC108428391,LOC108275305,LOC107695007,LOC107563886,LOC100538179,LOC107741823,LOC100694937 other downstream 1756907 22754973 ~ 22780959 (+)
LOC103047784 LOC108428360,LOC108274708 other downstream 1783669 22781735 ~ 22815522 (+)

Expression


Co-expression Network