LOC103038341 (LOC108428358)


Basic Information

Item Value
gene id LOC103038341
gene name LOC108428358
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 21004053 ~ 21007646 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007244290.3
TGGAATGAATGTGTCAGGTTAAAAACTTAATCTTTTAgattatctgaaattaaatacgAAGATATTCTACATACATttgttgattaaaaaacattacataGGCCTACATAAAATTACATGTGTCCTGCTGATATAGTAGCATGGTGCCAGAAAATTACTACTTTACATAGACATTTGCTGCTGATTTTcatgcttatgtttttttttttttaaataatgtgcatAGTCTAatcataatatcataatatgtttgtgtatgtatttaaaatCTCTTATGGTATGGAAACTACATGTGTGCACTGGGTGTGTTTTTCCATTCAGGTGGAACTGAATTGAATGTATGTGTTGAGGTGAGAGGTgaggttgctgaggtgtttgTGTTATGAAAACAACAGGGCCGCTTGTCCCCGACGGGGCCACAGACATGTTTTGACAGTCAGGGTACACCAGGCTGTACACGAGGGTCCCGGGCAGTCTGGGGACAACAATCCTCCGTTTTAAATGTCTCACACAGCCACTGCCCCCTTTATCACTGTCCTTTCTGACCCCACCCCAGCCTGCACCTATGGCCTCTCCCGCACTCCCGCCAAGCTGACTAACTCGACCCCCACCCGGAGCATGGGCCTCGGGCCCGTGCTGCCCCTCACGAGCTTTGAGAACGTGCTGTACGTCTTGTTCAGCGTGCTGCTGGCCACGGTCATCGTGTTCCTCAACGCGTCCGTGTTCTCCTCCATCCTGCTGTGCCGCTCGCTGCGCGCGGAGAACCGTTGCATGTACATGCTCAGCACGTGCCTGAGCGACGTGTGCTCGGGGGTCGCCTACTATTACTGCGGCGCGCTGGACGTGCGCGACAGCTACGACTCGCCCACGCGCACCTTCTACATCGCGCCCACCTTCCTGGGCCTGTCCTACATGGCCATCCTGGCGGCGCAGGCGGACCGATACCACGCGGTCACCTCGCCCCTCCGGTACGCGCTGCGCATGTCCCGCGGGCGCACGCTGGCCGTCATAGCCGCCTACTGGCTCTATGCCTTCGTCATCGTGGCCGTTAACAACCTGGTGACGGTGGGCATCGCCAAGAGTGTGACGAGCATCGGTACGTTCGTGGGCAACATCTTCACCGTCATCATCATGATCGGCCTCAACGTGCGCCTCTTCTTCATCGCCACGTACCAGCTGGAGCGCGAGCCCCCCACCGCCGAGCGCGAGAGCAAGCGCGCCTCCATCTATCTGATCGTGGTGGTGGCCGTGTGCTTCCTCATCGCCTGGCTGCCCATCTTCCTGCACATCATCGTCTGCAACTTCACGGGCACCACCTGCTACTCGTTCCGCAACGAGGGCACCGACCCGCTGCGCCTGCTGCCGCGCCTCAACGCTGTCCTCACCCCCGTCCTCTACATCAGAGGCTGCGCAGCGCTCAAACACACGCTGCTTACCAGGGTGTGGAGGGCGAGCTGCTGCAGGGCCAAGGGAGTTAATCCTGTGGAAAGATCCATTGCACCCAGTGGTCAAGTCACATCCGTGTGCAAGAACTGACCTGCCCCAGCAGATGTTCCACCACAGGAAACTGGGCTTTACTGAGTACTGAGTACAAATGTCATGTGTTTGTAAATATCATATTAAATAACCacgtgtttaaaaataaatctatataaattataattctGTACAGAAATATATTATCCTTCACGTTCACCTATACTTCATTTACTACTCAGAATTGTACATGTGGATAAATGTTAttgcttatttttatatatctttaataACTGTAGTTAGTAAACAAATGCTGCTACACTGCTGCTATATTTTTATTCCTGTTATAATTAGAGTTCACTGTTGTTCTGTTGTTGAGAAGGCTTTTTAAACCTGAACTTCAGCACTGCATACAGTAACATATTAAGTGAATCAGACATATAGCATGACAGTCATTCTTGATAAAATGTTTagtatttttctgtttgtaaatgtagtatttgtaatttaaataaataattattccaAAA

Function

NR:

description
PREDICTED: adenosine receptor A2b-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007244290.3 True 2006 mRNA 0.49 2 21004053 21007646

Neighbor

gene id symbol gene type direction distance location
LOC103036040 ankrd26,LOC108428422 coding downstream 29304 20939918 ~ 20974749 (-)
LOC103034889 LOC108428424,LOC108274948 coding downstream 75779 20923738 ~ 20928274 (-)
LOC103033709 LOC103033709,LOC108428427,LOC105941050,LOC101483816 coding downstream 93195 20908879 ~ 20910858 (-)
LOC103033388 LOC103033709,LOC108428427,LOC105941050,LOC101483816,LOC102290823 coding downstream 98533 20903078 ~ 20905520 (-)
trnat-agu_2 NA coding downstream 107877 20896103 ~ 20896176 (-)
morc2 morc2,LOC107674835 coding upstream 14320 21021966 ~ 21042030 (-)
LOC103039177 NA coding upstream 35835 21043481 ~ 21047306 (-)
LOC103041246 cd151,LOC103041246,LOC108410837,LOC107674842,LOC107655143,LOC107561168 coding upstream 64409 21072055 ~ 21084451 (-)
pus7 pus7 coding upstream 80973 21088619 ~ 21098682 (-)
LOC103042467 rps17,rs17,LOC103042467,LOC107389132,LOC108428414 coding upstream 182399 21190045 ~ 21197519 (-)
G75367 NA non-coding downstream 17291 20986194 ~ 20986762 (-)
G75366 NA non-coding downstream 18401 20979402 ~ 20985652 (-)
G75357 LOC108428367 non-coding downstream 89967 20912831 ~ 20914086 (-)
G75295 NA non-coding downstream 209094 20794484 ~ 20794959 (-)
G75286 NA non-coding downstream 434696 20568847 ~ 20569357 (-)
G75419 NA non-coding upstream 34461 21042107 ~ 21066403 (-)
G75426 chid1,LOC107674841,LOC107655144 non-coding upstream 53812 21061458 ~ 21063620 (-)
G75424 NA non-coding upstream 56702 21064348 ~ 21065147 (-)
G75444 LOC108428417 non-coding upstream 164976 21172622 ~ 21175068 (-)
G75447 NA non-coding upstream 177229 21184875 ~ 21187745 (-)
LOC103032014 maf,LOC108428434,LOC108274756,LOC102790406,LOC102298902,LOC101477682,LOC102192535,LOC101173775,LOC100702616,LOC107663990,LOC107565340 other downstream 255845 20622641 ~ 20748208 (-)
hsd17b12 hsd17b12,hsd17b12a,LOC107661451,LOC107696265,LOC107573907,LOC107716735,LOC107753600 other downstream 903803 20084428 ~ 20100250 (-)
G75207 api5,LOC107696269,LOC107753602 other downstream 972026 20027162 ~ 20032027 (-)
G75100 LOC108436948,LOC108275266 other downstream 1138071 19859694 ~ 19865982 (-)
G74838 wasl,LOC105896696,LOC108275301 other downstream 1931165 19070938 ~ 19072888 (-)
gatd1 pddc1,LOC102788149 other upstream 57673 21065319 ~ 21071246 (-)
LOC111193105 LOC102794092,LOC108274651,LOC107571202,LOC108428364 other upstream 261858 21269504 ~ 21273017 (-)
LOC103024007 LOC108428399 other upstream 1435090 22442736 ~ 22574013 (-)
LOC103033738 LOC103033738,LOC108444230,LOC106560753,LOC105008418,LOC108274439,LOC107549618,LOC107686877 other upstream 2316931 23324577 ~ 23366216 (-)
LOC103042310 ucmab,ucma,LOC107720768,LOC107569716,LOC107673257,LOC108275358,LOC107559968 other upstream 2819568 23827214 ~ 23833068 (-)

Expression


Co-expression Network