LOC103045028


Basic Information

Item Value
gene id LOC103045028
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 21293359 ~ 21299682 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007244316.3
TTCTGTCCAGCACAGCCATCCTGCTCATGAGGACTACAGAGATCACAGACTTCAGAAAGAGTTTCCTCTGGGCTTCATGCTGGCAGAACACAGAGGTCAGACTGTTTCTATCACACAGAGTTTGAAGGATGCTGGAAATGTCAAAGACAGTGTCCTGGCTGAccctgctgtgtgtgagtgtaactGTGAGGGGGGCACCTGCACCCATCTGTCCTCATGGGCATCCTGGTTGTCAGGCAATCTCTCTAGCAGACCTCTTCGACCGGGTCATTCAACACTCCTCACGCATGCACGGACTGTCCAGCGACCTCCACTCTGAGTTTGAGCAGTATTTTATTCCCAACAAAATCCAAATTGGGACCAGGAGGTGCCACACGTCTAATATAGTGACTCCGAATGGGAAGGAAAATGCAACGAAGCTGGCAGAGGAAGAGTTGACCGAGGTCATTctgaagctgttaatggcatgGGGAGAACCTCTGGCTCAGTTTCACGAGAGCATGACCCAGCACGCGGACTACAACATCTACAGCAGCAACAAAGCTCTGGAGATGAGTGACATGGTGTATGAGCTGAGGAATGGAGTACAGAAAGTGGCAGAAAAGatgcAGTTGTTGGGTATAATCAGTAACCTCTTGAATGGGCAGGACTTTTTGGAGGGTCTGGATGCTGTGGACAGTTCAGAGATTTTCTCTGTAGATTATCCCAACCTGCTTCACTGCTTCCGCAGAGACTCTGACAAAATCCAGAGTTACCTGAAGATCCTCAAGTGCAGAATCCTGCCTGAGAACGGATGTTAACGATGAATGTGGAGTAGGAAACACAGCTACACTGCAAAATGTGGCAAATAGGACTGACAGTGGTTTATCTTCAGAAGTCATATTTAAAAGATTCAAAGAAGCCAAAAACAACTGTTTTAGAAGAAGGTTAGAAAGTTTTAAAAGGGTTGACTCTGGAAAAACCTAGCTTATATGTCTACAATGAAAGTGAATATGGTGCTAACCCACAGACATAAGCCTATTTTATCTGTTCATGATACACTGAAATACAATAAGGTTACATTTGAAATGTGAACATCTTTACAGCACAGCATTTGACAATTAGCAATTTTCTacttaatttgttttctttttttgcatctgATTTTTAGGTCTGCATGTGTAAAATGCTGCATGTTGatgtagaaaataaggacaatAGGTATTTTGTTTTCAATGTCTACCTTTTATTGTATCTTTCCTAGATTTAgactatacactgacatgccaaaggcCAACAATAATCCTCCTCTTAAAAGCACAGATCATAATTCACTCCATTCCAATAAGTGACGTGAACATTACCTGTATCCGCATGACTTTATGCATTGTGCTGCTTCCACATGATTGGCTGAGCCATGAATAATTATTGTGAATATAGTTCTCCGAAGTCTAATGGAGCATTCCAATATTACAGTTAAAATGATAGTTAAGAAGCCTGAAGTGATTGCCTAGACtggtgtgtaattttgtgggggACATGCCTtataaatacagaaacaaacCTGAAAGAAATGCTAAAGATAAAAGCCTAGGTAATCATGTTCTAACGTAAATCAACATTTGTTAAGTTAGTAAACACTTGTTTGTGACAGAATCTTGGTTTGGCATGCATTTTTAATGctaa

Function

GO: NA

KEGG:

id description
K05439 PRL; prolactin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007244316.3 True 1665 mRNA 0.42 5 21293359 21299682

Neighbor

gene id symbol gene type direction distance location
pclaf kiaa0101 coding downstream 55165 21236632 ~ 21238194 (-)
LOC103043194 csnk1g1,LOC108415052,LOC108274686,LOC106573333,LOC107738908,LOC107559435 coding downstream 58241 21199250 ~ 21235118 (-)
LOC103042467 rps17,rs17,LOC103042467,LOC107389132,LOC108428414 coding downstream 95840 21190045 ~ 21197519 (-)
pus7 pus7 coding downstream 194677 21088619 ~ 21098682 (-)
LOC103041246 cd151,LOC103041246,LOC108410837,LOC107674842,LOC107655143,LOC107561168 coding downstream 208908 21072055 ~ 21084451 (-)
tmem117 tmem117 coding upstream 176063 21475745 ~ 21559492 (-)
irak4 irak4 coding upstream 279230 21578912 ~ 21591254 (-)
LOC103022647 NA coding upstream 612842 21912524 ~ 21946943 (-)
pdzrn4 pdzrn4 coding upstream 751556 22051238 ~ 22145393 (-)
cntn1 cntn1,LOC108275444 coding upstream 990391 22290073 ~ 22421277 (-)
G75451 NA non-coding downstream 47829 21245264 ~ 21245530 (-)
G75447 NA non-coding downstream 105614 21184875 ~ 21187745 (-)
G75444 LOC108428417 non-coding downstream 118291 21172622 ~ 21175068 (-)
G75419 NA non-coding downstream 226956 21042107 ~ 21066403 (-)
G75542 twf1,LOC108428409 non-coding upstream 266640 21566322 ~ 21575655 (-)
G75550 NA non-coding upstream 283683 21583365 ~ 21584651 (-)
G75554 NA non-coding upstream 326387 21626069 ~ 21626282 (-)
LOC111193107 NA non-coding upstream 421963 21721645 ~ 21724907 (-)
G75584 NA non-coding upstream 510858 21810540 ~ 21810761 (-)
LOC111193105 LOC102794092,LOC108274651,LOC107571202,LOC108428364 other downstream 20342 21269504 ~ 21273017 (-)
gatd1 pddc1,LOC102788149 other downstream 222113 21065319 ~ 21071246 (-)
LOC103032014 maf,LOC108428434,LOC108274756,LOC102790406,LOC102298902,LOC101477682,LOC102192535,LOC101173775,LOC100702616,LOC107663990,LOC107565340 other downstream 545151 20622641 ~ 20748208 (-)
hsd17b12 hsd17b12,hsd17b12a,LOC107661451,LOC107696265,LOC107573907,LOC107716735,LOC107753600 other downstream 1193109 20084428 ~ 20100250 (-)
G75207 api5,LOC107696269,LOC107753602 other downstream 1261332 20027162 ~ 20032027 (-)
LOC103024007 LOC108428399 other upstream 1143054 22442736 ~ 22574013 (-)
LOC103033738 LOC103033738,LOC108444230,LOC106560753,LOC105008418,LOC108274439,LOC107549618,LOC107686877 other upstream 2024895 23324577 ~ 23366216 (-)
LOC103042310 ucmab,ucma,LOC107720768,LOC107569716,LOC107673257,LOC108275358,LOC107559968 other upstream 2527532 23827214 ~ 23833068 (-)
deaf1 deaf1,LOC107726848 other upstream 2941216 24240898 ~ 24260530 (-)
LOC103025724 tmem80 other upstream 3491510 24791192 ~ 24798616 (-)

Expression


Co-expression Network