tmem117 (tmem117)


Basic Information

Item Value
gene id tmem117
gene name tmem117
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 21475745 ~ 21559492 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007244317.3
ctgtcttcctcCACGTCTGTGTGTGTACATCCGTCCCCCCTCTCtcgttctccctctctctatctctctctctctctctctctctctctctctctctctctgtagtgaAAGCGAGCtcagtgtatttgtttatttggagacTGCTGTAGACTAACTGCAGCTGTCTATGCCGGTCTTTGCTCCGGCTGAGCGCCGCGCTGATGTGAAAGTGGAGCCCGGGGAAGGGAGCAGCTTGCCGGTGGAGCTGAGCTAGCCTGGCCGCTGAACGAGGCGCCGCGATGGGCTCGGACATGCTGCACGACTGCCTCCGTGGCCGGTGGATGGCGAGGCTCAGCAGTATGGAGATAGATTCCCGCTTTCGTTACTACTTCCAGCATCCATGGTCTCGCTTGGTTGTGGCCTACCTCGTCACCTTCTTTAACTTCCTCATCTTCGCTGAGGACCCTGTGTCCCACAGCCAGACAGAGGCACACATGATAGTGGTTGGAAACTGCTTCTCCTTCATTGTGAATAAATACCCAGGAGGAGGGTGGAATGTCCTGAAAGTCCTGATGTGGATTCTGGCAATCTTCACGGGCCTCGTTGCTGGGAAGTTCTTCTTCCATCGAAGGATATTTGGCCGGTACCTGCGTCTAAAGATGTTCCGTGAGGACCACGGTTCCTGGATGACGATGTTCTTCAGCACTATCCTCTTCCTTTTCATCTTTTCTCACATCTACAACCTGTTATTGCTTATGACTGGTGGCATGGGtCCTCACATGGTTACAGAGTACATGGGCATAAGGAATGAGAGCTTTATGAAAATGGCTGCAGTTGGTACGTGGATGGGAGACTTTGTGACTGCATGGATGGTGACGGACATGATGCTGCAAGACTCTCTGTATCCAGACTGGGGACAAACCGCCCGTCGCTTTTGGAAGAAGGGCAACAATAGAATTGTGCTGTTCTGgaCAGTGTTGATCTCTCTAACGTCTGTAGTGGTATTGGTCATCAGTACAGATTGGATCAGTTGGGATAATCTGAACCGTGGGTTTCTACCGAGTGACGAAGTCTCCCGAGCGTTCCTCGCCTCCTTCATTCTTGTCTTCGACCTCCTCATTGTCATGCAGGACTGGGAGTTTCCTCACTTCATGGGGGATTTGGATATGAATCTGCCTGGTCTCTCCACGACCCAACTAAAATTTAAACTACCCGTCTGCAAGCGGATCTTTAAGGAGGAGTATCACATACACATCACAGGTAAATGGTTCAATTATGGGATCATCTTCTTGGTGCTCATTCTTGACCTCAACATGTGGAAGAACCAGATTTTCTACAAGCCCTACGAGTACGGGCAGTACGTCGGCCCCGGGGAGAAGATTTATACCGTGGAGGAGCCGGACACTCTCAGCAACTTCAACCGTAGCACGCTGACCTGGGAGTGGCGCTCCACTAACATAGACCCGCGCACCAACCGAACCTACATCCACAGGGACATGTTCCTCCACAGCCGCTACATCGGCACCAGCCTGGACGTGAAGTGCTTGGCCTTCATTCCGAGCCTGGCTGCGTTTGTTCTCTTCGGCTTCTTCATCTGGCTTTTTGGACGCTTCCAGGACAGCGAGACCTTTCCGGAGAGCCAGGACAAAACGTACGAGCGCATCAAGCGTAAATCACCCTCCGATTTGGGCGTCACGCCAGAGGAAGTTCACGTGTCCATGTGCGAGACTCTGAAAAGGACTGGGGCTCCCATGCTGCTGCTAGTTGACGCCCACCACTTCGGTTCCTCCACTAACTCCATATCGCCCTGTTCTAATGAGACCCAGGAGACGCAGCCTAGCATTTCAGTGGATAAAGCAGCATGTCCGGGAGCTGCCGATGTCGACAAACTGTCCCCGTGATTCTGTAGCTCTAAACAAGGCTAACTCAGACTAATAAAGGTGAGGGATACTTCTACTGACCTCCTCCAACTCCTGCTTTGCCTTTGTGGTGTTGTCAGAGATGACTGACTGTCTCCAGCTTCGAGCCTCCAGCCTCCAAAGAGATCCCGTAATTGGCCTGGAAACCTTCAGAGGACTGTCTGTTCGTCTTTTAAACCAGAACAGAGGGAAGCAAACAGAATCAAGAAAAAACCCAGAGTGGTggtgtcttttttacattttattaaaaaatcatCAAGACATTTGTGGCACCACAGTTCATCACTCTTCTCATCCAAGATCAGTATTGTAAATGATCCGGTGGTgcttaacactttattttttctactGTCTTTTTTATCGAGCTATTTTGGTGCCTACATGGAAATCCTATTTATATACTACAGTATGTACGTATGCATGGCAAAATGGTCATGATAAATTATCTTCAGAGAACGCTGTGCCTTCACTTAAGTCCATTCACGGACACAAAATTCAAAGGTATTTTAAGACGTCATACACAATGTTCTTATACTACTAATTCATTTGTAAACATTTTGTAAACATCTTCTGAGACAGAAGGCCTATTCACAccaaattcaattttttttatggatgaaaaaacacaaaagcaagtttaaaaagctttttttctgcattgttgGAACATCAGGATGACCAATCCTGAGCCCTGTTCTAACAGTTACAGACCAAACGAATGAGCATCAAGATCTTTTTCATAGCAAAACACTTGTATTATCTTTGCTTTAACTTTATGTTTTATGTCCTGTGGGTTTCTTGTCCTTTTACACAGTTGTCCTATACAAATACATTACTGGTCAAAGGTTTTAAAACACCCATATTTTTCTGTTGtccagtatcagtactgtatGACCCTGATaatctgctttttattttctcatcttagcaatgattttattactgcactacttcacctgtcagacctctaattcttctcttcacagCTAAAACtactgagacttagtccagtGTTAGGCTGAGCTAAAGGAGTTGCCATGTaggtcagccagacctcttcctGTATCAGTTTTCTGAGTCAGCATCTtctgaaggtgtaggaaacagtactcccTGCTTTCTGGCTTTATCTTTGATTTCTCAAAAGAAAAGACTTGtacttttaataattacagagttctctgtgtttctgtgtctgtgttatttttgtagttattatgatgaaagtggaAATGTGCTGTAAGTGTGCAAATGCTGTAGTAGACAGTAAAGTAACCCGATCAGTAACAATACTGATCTACTACAGATAAAGGCTTCGTAAATTGCCATTgctacttacttacttaaccccttcttttttttttctttttttttacaaattacttTACAATGcact

Function

symbol description
tmem117 Predicted to be involved in intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress. Predicted to be located in plasma membrane. Orthologous to human TMEM117 (transmembrane protein 117).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007244317.3 True 3294 mRNA 0.46 8 21475745 21559492

Neighbor

gene id symbol gene type direction distance location
LOC103045028 NA coding downstream 176063 21293359 ~ 21299682 (-)
pclaf kiaa0101 coding downstream 237551 21236632 ~ 21238194 (-)
LOC103043194 csnk1g1,LOC108415052,LOC108274686,LOC106573333,LOC107738908,LOC107559435 coding downstream 240627 21199250 ~ 21235118 (-)
LOC103042467 rps17,rs17,LOC103042467,LOC107389132,LOC108428414 coding downstream 278226 21190045 ~ 21197519 (-)
pus7 pus7 coding downstream 377063 21088619 ~ 21098682 (-)
irak4 irak4 coding upstream 19420 21578912 ~ 21591254 (-)
LOC103022647 NA coding upstream 353032 21912524 ~ 21946943 (-)
pdzrn4 pdzrn4 coding upstream 491746 22051238 ~ 22145393 (-)
cntn1 cntn1,LOC108275444 coding upstream 730581 22290073 ~ 22421277 (-)
LOC103026605 NA coding upstream 1032128 22591620 ~ 22627981 (-)
G75451 NA non-coding downstream 230215 21245264 ~ 21245530 (-)
G75447 NA non-coding downstream 288000 21184875 ~ 21187745 (-)
G75444 LOC108428417 non-coding downstream 300677 21172622 ~ 21175068 (-)
G75424 NA non-coding downstream 410598 21064348 ~ 21065147 (-)
G75426 chid1,LOC107674841,LOC107655144 non-coding downstream 412125 21061458 ~ 21063620 (-)
G75542 twf1,LOC108428409 non-coding upstream 6830 21566322 ~ 21575655 (-)
G75550 NA non-coding upstream 23873 21583365 ~ 21584651 (-)
G75554 NA non-coding upstream 66577 21626069 ~ 21626282 (-)
LOC111193107 NA non-coding upstream 162153 21721645 ~ 21724907 (-)
G75584 NA non-coding upstream 251048 21810540 ~ 21810761 (-)
LOC111193105 LOC102794092,LOC108274651,LOC107571202,LOC108428364 other downstream 202728 21269504 ~ 21273017 (-)
gatd1 pddc1,LOC102788149 other downstream 404499 21065319 ~ 21071246 (-)
LOC103032014 maf,LOC108428434,LOC108274756,LOC102790406,LOC102298902,LOC101477682,LOC102192535,LOC101173775,LOC100702616,LOC107663990,LOC107565340 other downstream 727537 20622641 ~ 20748208 (-)
hsd17b12 hsd17b12,hsd17b12a,LOC107661451,LOC107696265,LOC107573907,LOC107716735,LOC107753600 other downstream 1375495 20084428 ~ 20100250 (-)
G75207 api5,LOC107696269,LOC107753602 other downstream 1443718 20027162 ~ 20032027 (-)
LOC103024007 LOC108428399 other upstream 883244 22442736 ~ 22574013 (-)
LOC103033738 LOC103033738,LOC108444230,LOC106560753,LOC105008418,LOC108274439,LOC107549618,LOC107686877 other upstream 1765085 23324577 ~ 23366216 (-)
LOC103042310 ucmab,ucma,LOC107720768,LOC107569716,LOC107673257,LOC108275358,LOC107559968 other upstream 2267722 23827214 ~ 23833068 (-)
deaf1 deaf1,LOC107726848 other upstream 2681406 24240898 ~ 24260530 (-)
LOC103025724 tmem80 other upstream 3231700 24791192 ~ 24798616 (-)

Expression


Co-expression Network