LOC103047463 (prickle1,LOC107726281,LOC107695002,LOC107741965)


Basic Information

Item Value
gene id LOC103047463
gene name prickle1,LOC107726281,LOC107695002,LOC107741965
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 21865975 ~ 21912295 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007244324.3
TTCTCTTGTCtgctcacattctctctctctctctctctataactcTAACTCTCAAACGCTGCTGTGTTCAGCTGCTGATATGGACATTGGTCAGCCTGACATTTTTGGACGTAACTGCAGGATGCTGTAGCAGGCCTGGGGATCTATTCTGCTGGATTTAGAGATGATTATGACAAGACTTTTGGAACATGTTACCCTATAGGACTTATACCTCAGGAAGAAGTttacagtgagaaagagagggagctGTTGGAGAATCTTATATTTCTGGATCTCTGTGTCTGGAGAGGAAGCCTGTCTGATGAACCTAGAAAATCCTGGTGGTTTCCATAACAGGAGCAGGAGGCAGTTTGAAATGGAGCAGAAGGTCAGCAAGCTCACTTTTGGCTTTCAGAGAAGCTCTACCTCAGATGATGACTCCGGCTGTGCCTTGGAGGAGTACGCCTGGGTTCCACCTGGACTACGACCTGAGCAGGTCCAGCTGTACTTCTCCTGTCTTCCAGAGGATAAGGTTCCCTACGTTAACAGCCCAGGAGAGAAAAATCGCATCAAGCAGCTCTTGTATCAGCTGCCTCCTCATGATAATGAGGTGCGTTACTGCCAGTCCCTCagtgaagaagagaagaaggagCTGCACATGTTCAGTGTGCAGAGAAAGAAGGAGGCACTGGGACGTGGAACCCTAAAACTGCTGCCCAGGACTATGCATCATGCTATCTGTGAGCATTGTGGGGAGAACATCGGTGGAGGAGAGATGGCAGTGTTTGCTTCAAGAGCAGGTCCAGGACTGTGCTGGCATCCAGCATGCTTTGCATGCTCAACATGTAGTGAACTGCTTGTGGATCTTATCTACTTCTACCACGAGGGGAAGATTCACTGTGGGAGGCATCATGCTGAACTGTTAAAGCCTCGCTGTTCATCCTGCGATGAGATTATCTTCGCTGACGAATGCACAGAAGCTGAGGGTCGTCACTGGCACATGAAGCACTTTTCATGCTTTGAATGCGAAACCATTCTAGGCGGTCAACGGTACATCATGAAAGATGGTCGGCCATACTGTTGTGGGTGCTTCGAGTCCTTGTATGCAGAATACTGTGAGGCCTGTGGAGAACACATTGGAGTCGACCATGCTCAGATGACATACGACGGTCTCCACTGGCATGCCACAGATGAATGCTTCAGCTGTGCCCAGTGCAAAAGCTCATTGCTTGGCTGCCCATTCCTGCCCAGGCAAGGCCGCATCTACTGCTCCAAAGCTTGCAGTCTGGGAGAGGATGTGCACGCCTCAGACTCCTCGGACTCTGCCTTTCAGTCTGCCAGGTCACGCGAGTCCCGTCGCAGTGTAAGAATGGGCAAGAGCAGTCGATCTGCAGACCAGTGTCGCCAGTCTCTGCTTTTCTCCCCAGCCGGGAACTACAAGTTCCCTGGTTTTTCTGGCAACGCCGATGACACCTTATCAAACAAGTTCTCCCATTTGAGTTTTGAAAATGACCATTTCTGGAGGAACAGGGAGGAGCAGGAAGCACCTGAGGACCACGAAGAATGGGCTGAGCATGAAGACTACATGACCCAGCTACTTCTGAAGTTTGGAGAGCACGGCATCGTCCAGCAGTCAGAGGACAACAGACCGACTGACCTTTGGACGACCGATTCCGAGGTCAAAATTAAGACGGAGTCAAagatgttgagcagtggtggCAGTGGGAGTCTGGCCAGTAAAAAGTACAAAGCAGACATGTACTGGACACAGTCTCAGGATGGACTGGGAGACTCGGCCTATGGTAGTCATCCTGGGCCTGCAAGTAGTCGGAAAATCCAGGAGCTAGACCTGGAGCATGGTGCTAACTTTAAACGAGAGGATAAGAAGTGGTACGACGACTCACTGGAATGCATCACAGATGAGCTGAAACAAGCAGAGCCAAGTGTACGAGACTCCATGGACTCTCTGGCACTCTCAAATATCACAGGTGCATCAGTAGATGGTGACTTTAAAGAGAAGCCATTACCCTATTCGCTACAAAACTTCCCAGGGCTGGAGAATGAAGATTGTGAGAAAACAAGCAACATGGGAACTCTCAATTCTTCAATGCTGCACAGAAGTGCCAACTCCCTCAAGAGCCTTACCTCCGAGTTAGAGCAAGTGGAAGCCATTGAGGAGGAAGAACCTGAGGAGATTATCCCTCTCCCAGAGGAAAGGCCCAAAATCCCACACTTACCTGTTCTTCGGAGGACCAGATCCCAGTCCAGGCCCCAACAGGTCAAGTTCTCAGATGATGTTGTGGACAATAGTCGCTACGATGACGTGGAAGTACGACAGCCTCCCATGAGCGAACGCACGCGCAGACGGGTTTACCATTTTGATGAACAACAGGACCGGCGCAGTCATCGGCATCATCACAACCACAGACGACGGAGGAGCCGGAAGTCTCGTTCGGACAACGCGCTGCATATAGTACCCAAAGAACGAGCTCGCATGTGCTTCAGAGAGGACCAGCACCAGCGTGCTCCCGTCTCCGCCTCTCAGTACGGACAGCACACGCACGGCCACGCAAACTCAGATTACGGTCTGCAGAACCAGGCCGCAGAACGATTCTTTCGTCTTTACGGAGACGACGACGAATGGTGCTCTACATGCTCCTCTTCCTCGTCTGAATCGGAGGAAGAAGGCTTTTTCCTGGGTCAACCAATTCCACAGCCCAGGCAACCTCGCTATCAGTATTACGCTGATGAACTCCCCAGTCAAGTGCCAGCTTCTTTTGGCACAAGGACAAACTCCAAAAAGAAGAGAGGACACAAAGgcaaaaactgtataatttcaTAAACTGTAAAACCGATGCAATGTAGTAGATAGTTTCTCCATTTTAACTGCCTTTATTTAAAGGTCAGTAGCTTtctttgcagtattttttttacctgataaACAAGACTGACAATTTGAGAAAagatgcaatatatatataaaaaaaagagataaataacaGATAATGAATTAACAAAGCAAAGATTCACCCTACAACTGCAACAACTGGTATGTGTATTAAATAACATAACATGTCACTTATGGTCActgagagaatgaaagaatataatatttataaaagcaCCATATATTAATGAGTGAATATTTAACAGTccaaatattaaaaagtgtatatactgtaaaaaactattgatttaaagctgatatttttaTATCCCTTTTTAAAAGACAGATAAAGTAGAATAGCTGACAAATAAATATCAGTAATGGTTTGCAGAAGCCCggctttaaagaaaaaaagaaatatgtcaCCAAATACACTCCAGTTAGCCCCTCGCTATATCTTTGTGTACATACTTCTGTCCTATCAAAGCAActgaacacaaacaaacattcaaTGTATTATGCAGGGCCTGGTTGCtttgaattttatttatgtgCCATAGTAAACAGATCAGTGTAATCTGTATAAATGCAAAAACTGGAACATAATGctgccaataaaaaaacatatgtaagtta
>XM_022672329.1
AGGTAGTGGGAGGGGGGATCCATCCCAATAGGCGCAGAGCAGAGTAGAGAGTGTCATTCCACTGGGCGCCACTCTCAGGCCGTTAGAGAAAGTAATGCTGCTCGGATAAAGCAGGAGAAGCGCAGCTGGCTCAGCGTTACAGCCGCAGCACCACTCGCTCAGCCCAGCCTGGACATGCAGCGGGACCGCCGCGCTGATCCGGACCATGCCGCGCAGTAACACACGCAGCTGTGGACAGTCCTGACCAGAACCGGGCTTAACGCTTATTATAGGAGTTACTCGGATCGGCTCGGGAGTTCGTGTCGTTTGTTAAACTTTCAGGAAGCCTGTCTGATGAACCTAGAAAATCCTGGTGGTTTCCATAACAGGAGCAGGAGGCAGTTTGAAATGGAGCAGAAGGTCAGCAAGCTCACTTTTGGCTTTCAGAGAAGCTCTACCTCAGATGATGACTCCGGCTGTGCCTTGGAGGAGTACGCCTGGGTTCCACCTGGACTACGACCTGAGCAGGTCCAGCTGTACTTCTCCTGTCTTCCAGAGGATAAGGTTCCCTACGTTAACAGCCCAGGAGAGAAAAATCGCATCAAGCAGCTCTTGTATCAGCTGCCTCCTCATGATAATGAGGTGCGTTACTGCCAGTCCCTCagtgaagaagagaagaaggagCTGCACATGTTCAGTGTGCAGAGAAAGAAGGAGGCACTGGGACGTGGAACCCTAAAACTGCTGCCCAGGACTATGCATCATGCTATCTGTGAGCATTGTGGGGAGAACATCGGTGGAGGAGAGATGGCAGTGTTTGCTTCAAGAGCAGGTCCAGGACTGTGCTGGCATCCAGCATGCTTTGCATGCTCAACATGTAGTGAACTGCTTGTGGATCTTATCTACTTCTACCACGAGGGGAAGATTCACTGTGGGAGGCATCATGCTGAACTGTTAAAGCCTCGCTGTTCATCCTGCGATGAGATTATCTTCGCTGACGAATGCACAGAAGCTGAGGGTCGTCACTGGCACATGAAGCACTTTTCATGCTTTGAATGCGAAACCATTCTAGGCGGTCAACGGTACATCATGAAAGATGGTCGGCCATACTGTTGTGGGTGCTTCGAGTCCTTGTATGCAGAATACTGTGAGGCCTGTGGAGAACACATTGGAGTCGACCATGCTCAGATGACATACGACGGTCTCCACTGGCATGCCACAGATGAATGCTTCAGCTGTGCCCAGTGCAAAAGCTCATTGCTTGGCTGCCCATTCCTGCCCAGGCAAGGCCGCATCTACTGCTCCAAAGCTTGCAGTCTGGGAGAGGATGTGCACGCCTCAGACTCCTCGGACTCTGCCTTTCAGTCTGCCAGGTCACGCGAGTCCCGTCGCAGTGTAAGAATGGGCAAGAGCAGTCGATCTGCAGACCAGTGTCGCCAGTCTCTGCTTTTCTCCCCAGCCGGGAACTACAAGTTCCCTGGTTTTTCTGGCAACGCCGATGACACCTTATCAAACAAGTTCTCCCATTTGAGTTTTGAAAATGACCATTTCTGGAGGAACAGGGAGGAGCAGGAAGCACCTGAGGACCACGAAGAATGGGCTGAGCATGAAGACTACATGACCCAGCTACTTCTGAAGTTTGGAGAGCACGGCATCGTCCAGCAGTCAGAGGACAACAGACCGACTGACCTTTGGACGACCGATTCCGAGGTCAAAATTAAGACGGAGTCAAagatgttgagcagtggtggCAGTGGGAGTCTGGCCAGTAAAAAGTACAAAGCAGACATGTACTGGACACAGTCTCAGGATGGACTGGGAGACTCGGCCTATGGTAGTCATCCTGGGCCTGCAAGTAGTCGGAAAATCCAGGAGCTAGACCTGGAGCATGGTGCTAACTTTAAACGAGAGGATAAGAAGTGGTACGACGACTCACTGGAATGCATCACAGATGAGCTGAAACAAGCAGAGCCAAGTGTACGAGACTCCATGGACTCTCTGGCACTCTCAAATATCACAGGTGCATCAGTAGATGGTGACTTTAAAGAGAAGCCATTACCCTATTCGCTACAAAACTTCCCAGGGCTGGAGAATGAAGATTGTGAGAAAACAAGCAACATGGGAACTCTCAATTCTTCAATGCTGCACAGAAGTGCCAACTCCCTCAAGAGCCTTACCTCCGAGTTAGAGCAAGTGGAAGCCATTGAGGAGGAAGAACCTGAGGAGATTATCCCTCTCCCAGAGGAAAGGCCCAAAATCCCACACTTACCTGTTCTTCGGAGGACCAGATCCCAGTCCAGGCCCCAACAGGTCAAGTTCTCAGATGATGTTGTGGACAATAGTCGCTACGATGACGTGGAAGTACGACAGCCTCCCATGAGCGAACGCACGCGCAGACGGGTTTACCATTTTGATGAACAACAGGACCGGCGCAGTCATCGGCATCATCACAACCACAGACGACGGAGGAGCCGGAAGTCTCGTTCGGACAACGCGCTGCATATAGTACCCAAAGAACGAGCTCGCATGTGCTTCAGAGAGGACCAGCACCAGCGTGCTCCCGTCTCCGCCTCTCAGTACGGACAGCACACGCACGGCCACGCAAACTCAGATTACGGTCTGCAGAACCAGGCCGCAGAACGATTCTTTCGTCTTTACGGAGACGACGACGAATGGTGCTCTACATGCTCCTCTTCCTCGTCTGAATCGGAGGAAGAAGGCTTTTTCCTGGGTCAACCAATTCCACAGCCCAGGCAACCTCGCTATCAGTATTACGCTGATGAACTCCCCAGTCAAGTGCCAGCTTCTTTTGGCACAAGGACAAACTCCAAAAAGAAGAGAGGACACAAAGgcaaaaactgtataatttcaTAAACTGTAAAACCGATGCAATGTAGTAGATAGTTTCTCCATTTTAACTGCCTTTATTTAAAGGTCAGTAGCTTtctttgcagtattttttttacctgataaACAAGACTGACAATTTGAGAAAagatgcaatatatatataaaaaaaagagataaataacaGATAATGAATTAACAAAGCAAAGATTCACCCTACAACTGCAACAACTGGTATGTGTATTAAATAACATAACATGTCACTTATGGTCActgagagaatgaaagaatataatatttataaaagcaCCATATATTAATGAGTGAATATTTAACAGTccaaatattaaaaagtgtatatactgtaaaaaactattgatttaaagctgatatttttaTATCCCTTTTTAAAAGACAGATAAAGTAGAATAGCTGACAAATAAATATCAGTAATGGTTTGCAGAAGCCCggctttaaagaaaaaaagaaatatgtcaCCAAATACACTCCAGTTAGCCCCTCGCTATATCTTTGTGTACATACTTCTGTCCTATCAAAGCAActgaacacaaacaaacattcaaTGTATTATGCAGGGCCTGGTTGCtttgaattttatttatgtgCCATAGTAAACAGATCAGTGTAATCTGTATAAATGCAAAAACTGGAACATAATGctgccaataaaaaaacatatgtaagtta

Function

symbol description
prickle1 Predicted to enable zinc ion binding activity. Involved in several processes, including negative regulation of cardiac muscle cell myoblast differentiation; positive regulation of cellular protein metabolic process; and protein import into nucleus. Located in cytosol and nuclear membrane. Implicated in progressive myoclonus epilepsy 1B.

NR:

description
prickle-like protein 1

GO: NA

KEGG:

id description
K04511 PRICKLE; prickle

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007244324.3 False 3502 mRNA 0.46 8 21893998 21912295
XM_022672329.1 True 3534 mRNA 0.48 8 21865975 21912295

Neighbor

gene id symbol gene type direction distance location
LOC103046961 LOC107694983 coding upstream 120011 21644638 ~ 21745964 (+)
LOC103047464 twf1,LOC108428409 coding upstream 287111 21566368 ~ 21578864 (+)
LOC103047162 nell2,LOC108428412,LOC107695006,LOC107710867 coding upstream 405101 21317532 ~ 21460874 (+)
LOC103046854 NA coding upstream 572652 21274942 ~ 21293323 (+)
LOC103044722 LOC108428364 coding upstream 592944 21270738 ~ 21273031 (+)
LOC103022337 yaf2,LOC108428404,LOC103358851 coding downstream 36260 21948555 ~ 21955139 (+)
LOC103021604 LOC103021604,LOC108428402 coding downstream 44277 21956572 ~ 21971236 (+)
LOC103027184 LOC108428395,LOC108275251,LOC103155695,LOC105938547,LOC106919346,LOC107706850,LOC103466445,LOC107552424 coding downstream 724865 22637160 ~ 22666809 (+)
rsl24d1 rsl24d1,LOC107694994 coding downstream 908822 22821117 ~ 22824416 (+)
fam96a fam96a,LOC107673635 coding downstream 1506371 23418666 ~ 23425305 (+)
G75577 NA non-coding upstream 114727 21750926 ~ 21751248 (+)
G75413 kiaa0101 non-coding upstream 627509 21236592 ~ 21238466 (+)
G75405 NA non-coding upstream 661952 21199287 ~ 21204023 (+)
G75390 rps17,rs17,LOC106527967,LOC107389132,LOC103042467 non-coding upstream 670204 21190766 ~ 21195771 (+)
G75403 NA non-coding upstream 717626 21147808 ~ 21148349 (+)
G75627 NA non-coding downstream 119864 22032159 ~ 22032470 (+)
G75664 NA non-coding downstream 526735 22439030 ~ 22439325 (+)
G75689 LOC103026897,LOC108428397 non-coding downstream 717899 22630194 ~ 22633409 (+)
G75734 NA non-coding downstream 839240 22751535 ~ 22751999 (+)
G75760 NA non-coding downstream 988983 22901278 ~ 22902077 (+)
mov10l1 NA other upstream 601199 21250467 ~ 21264776 (+)
G75391 pus7 other upstream 769069 21088622 ~ 21096906 (+)
G75383 morc2,LOC107754332,LOC107701074,LOC107674835 other upstream 840847 21023256 ~ 21025128 (+)
LOC103028745 NA other upstream 1658020 20203619 ~ 20207955 (+)
LOC103044129 NA other upstream 2328358 19527212 ~ 19537617 (+)
LOC103028957 rfx7,LOC108428391,LOC108275305,LOC107695007,LOC107563886,LOC100538179,LOC107741823,LOC100694937 other downstream 842678 22754973 ~ 22780959 (+)
LOC103047784 LOC108428360,LOC108274708 other downstream 869440 22781735 ~ 22815522 (+)
G75938 LOC105900730,LOC105912833 other downstream 1575235 23487530 ~ 23487870 (+)
G75974 NA other downstream 2003496 23915791 ~ 23917603 (+)
LOC103038709 LOC103038709,LOC108432651 other downstream 2119797 24032092 ~ 24037861 (+)

Expression


Co-expression Network