LOC103026605



Basic Information


Item Value
gene id LOC103026605
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 22591620 ~ 22627981 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>XM_007244345.2
ACGTGATCTTTGTTTTCCAGGGCAGCTGTATTTTTGTCCGGAGCGCTGTCAGGTCGACCGACCTCAAAAACACAGATGTGAAGATTTGTgagaatttaaatgatttaaacgCATCGCCGGGTCCGCGGGGCTGCTGCTCACAGACTGAGCTGTGAGATCAGAGACTGTAgatattttaatgtgtgttttaaagccCGGTAAAGGAGTACAAGAGACGCGGCTGTGTTAGCCACATCGCTAACCTAAATGAACGGTGTGTGTTTCAGAGCTGGAGCCTCACCGGTGGAAGAAGTGAGATTACCCGCAGCGGCGGATGATTTAATACATTCTTAGAAACAGTTACTCTGATTTTCTGGCGGTAGTCTGGAGAACACTGGTGAACTTGTGTAGGCTGATGGTGAACCTAGCTACTAACTGAGCCTATCAGTACCCACAATCCAGCTAGCCCAGCTCTCCTCTCCAAGAGACTTCATGGCAAATCTATGCAAATAAGAAAAAGGATGCACCATCCTCCAAGAACCATTGGACCAAATGTTGACCTCAATAAACTAAAGGAAGCATGACTTTCAGATGGGTCCCAGATTCATATGTGCAGTCACTGAACAGGGCTGTGTACTTATGGCACACACAAGGCCAGAGGGTTATGAACATCTCCTTCCATCCGTTGTGTAATCCAACTTACCGACTTTACGCCAAAAGGCCTTTTAGCTACAGAGACAGTCATCATATCTGGAAGCACGTCCACGGCCAAAAGAGTAGAATTCGGAGAGTGTGCCCCTGTAGGGATGGTTCCCGCAGGCACAAGATTTTGCTCTACACCAGCATTTCCAGTTTCAATACCTCAACCTCCCTTGGGTCCACAGACCTGAGCCATCGCATGTTACGACTAAAGAGCACTTTGGAGTCGGTCTCAAAGGTTGTGAGTGGAACACAAGCTGAGATTATCTCTAAGATAGCTCGTCTCAAATCGAGTGCCAGacaggagaagagagagggcGAATCAAGGCCTGAGACGACACCACTTAAAGATCAAAGCACTGGATCTGGAGATTTGGCAGCTTCACCTACACTTGTACCTCATCCTCCATCCGCTACTGTAACCTCACATCCAGACACAACCCCAAGACTACCTACTGAAGCACAGTCAGTCCCACCTCAGCTTGTCCAGGAACAAAGGGaagtgaaaaagaaaagatcTGTGGGCCAAACCTCTAAAGTGAGTGGAGTAGCCACAAGCAAGTCTTCCCAAGCTCAGGCAGGAGACCTTGCAGCTCAACCCGAGAGCCCCACTGCATCCAAATCGACTTCAAATCAACTCTTCCACCCTGGTTCTTTTAGTGTCAACCTAGGCGAAACCTACAACTACCTATCCCATCATATCAATGCTTATTTTCGCAGCTCCACTAAAGCGCAAGAGAATCAAGAGGCCAAAGACGCCACTGATCAGCCATCCTCTTCCATACCTGATCAGTGCCACCAGAACAGTGACCACACACCCACCACTGTGCCTGCAAAGGTCCAGACAACACCTGCACCGCTCCCAGCGCCAAGTCCTACTTCCCCTTCCAAAAAGAGCATTGGCCATTATCTGGGGTACTCTACACCTACAGTCCAGGCCTTTGTAGGGAGCTACATTGCTCCCCTTGTTCCTAGGTTTAGAGCAGAGCCAAAAACTGCACTGCCCGTGGCAGATAACCCTCCTTCCCCTGAGGACCCCACTTCAAAACAGAAGGAAACGCCAGAGATTAAAGAGCAGAAAGCGGCAGATGAAAAGGCACGGAGACTGCTGATTCAAAGAGAGAAGATCATTGCTCGGGTCAGTGTGGATAATCGGACACGAGCACTGGTGCAGGCCTTACACAGAGCATCAGATGTCAGGCTTTATATCAGCAGAGTGGAGGATCTGAGCTACCACCTCCTGGAGTTCCCTGAGACCAGACTAGTGGCTGTAAAGGAGATGGTGATTCCGTGTCTCCTGCGCCTGAGGCAGGCCAGTGATCCGTCTCTAAAGGAAGCGGTCAGAGAGGCCCTTACCCTGGTGGGCTACATTGACCCTGTAAAGAACAGAGGAATACGCATATTATCTATCGATGGAGGGGGCACCAGGGGTCTGGTGGCACTTCAGACTTTACAAAAGCTGGAGGAGCTGTCAGGAAAACCCATTTACCAGCTTTTTGATTACATCTGTGGGGTGAGCACAGGTTCTATTTTAGGTGTCATGCTTGGCGTGCTCAATATCCCtctgagtgagtgtgaggaGCTGTACAAGAAGCTGAGCTCTGATGTCTTTAAGCAGAATGTTATTGTGGGAACAGTGAAAATGGGCTGGAGTCACGCCTTCTATGACAGCGAGGTCTGGGAGAAAGTACTAAAGGAAAAGATGGGATCTGATCTTATGTTTGAAACGTCAAGAAACCCTGATTGTCCAAAGGTGGCAGCAGTGAGCACAGTGGTAAATAAGGGCACTCCATTAAAAGCGTACGTCTTCAGGAACTACAATTTGCCACCTGGAGTGCGCTCCCATTATCGAGGTGGCTGCCAGCACAAGATGTGGGAGGCCATTAGAGCATCCTCAGCCGCTCCGGGGTACTTCCAGGAGTTTGCTCTGGGAACCGACCTCCACCAGgatgGCGGTTTGCTAATAAACAATCCGACTGCTCTGGCGATCCACGAATGCCAGTGTCTGTGGCCAAACACTCGTCTGCAGTGCGTGGTGTCTCTCGGTACAGGGCGCTTTGAGGCTCCCAGCAAGAACGCCGCCACCTACACCAGCCTGAAGACCAAGCTGACCAACGTCATCAGCAGTGCTACAGATACAGAGGagGTGCACACTATGCTGGACGCCCTGCTGCCTCCCCACACGTATTTCCGCTTCAACCCGTACATGAGTGAGGAAGTGGCGCTGGACGAGAGCCGCAGCGAGAAGCTGAACCTGCTGCAGGTGGAGGGAATGCGTTACCTGGAGCGCAATGAGGAGAAGCTGAAGCGAGCCATCAGCACCCTCGCACAGGAGAAGAGCTCAGCTCAGAGGCTGGTCGAGTGGGTCCAGCTCAAAGCGCACATGTACGACGGCCTGACAGGCTTCTCAAAACCGTAGCGGTGCATGGGCGCTGTTTCCACTATCACAGCATATTGTAGCCtgcagtaaaatatttattgataaAGCACGTTCTGATAATGCCTCCTCTAAGGGCTTGCGTTACTGTGTTTGAGGATTATAGCAGCATCCTGGACACAGGCTGAAATTCCCAGCTGAATAAATGACCTCTGAAATGCTGAGGGACTAGCTGTAGGACTAGCTGTAAGAATAGCTGTTCCTTATGGAGCTGATAATGTTTATCAGTCCTCAAACATATGACAGAATCCCCCAGACTGCTAAAACCACACAACAGTACTTTAGTCTTCTTTAAACAAACGCTGTATAGAGTAGATTGGTGTTTTGCTAGAAGAAGTCATGGGAAAATATCTGAAATTGCTTCTAgatttcattatatttatacttatttCACAATAATCACTACAGGGGAAAACGTGTGTGAAGCTGCATTGGAACCAAGAGGAATTGTGATTAAACCGAGACTGTAATATTA

Function


GO: NA

KEGG:

id description
K16815 PNPLA8; calcium-independent phospholipase A2-gamma

RNA


RNA id representative length rna type GC content exon number start site end site
XM_007244345.2 True 3590 mRNA 0.49 10 22591620 22627981
Loading

Neighbor


gene id symbol gene type direction distance location
cntn1 cntn1,LOC108275444 coding downstream 170343 22290073 ~ 22421277 (-)
pdzrn4 pdzrn4 coding downstream 446227 22051238 ~ 22145393 (-)
LOC103022647 NA coding downstream 644677 21912524 ~ 21946943 (-)
irak4 irak4 coding downstream 1000366 21578912 ~ 21591254 (-)
tmem117 tmem117 coding downstream 1032128 21475745 ~ 21559492 (-)
LOC103026897 LOC103026897,LOC108428397 coding upstream 2206 22630187 ~ 22637125 (-)
LOC103027474 NA coding upstream 38842 22666823 ~ 22687469 (-)
LOC103027797 aqp9a,LOC103027797,LOC108428394,LOC107552433,LOC107574158,LOC107687613,LOC108275388 coding upstream 67428 22695409 ~ 22702841 (-)
LOC103028124 NA coding upstream 74929 22702910 ~ 22719280 (-)
LOC103028433 LOC108428361 coding upstream 92531 22720512 ~ 22734099 (-)
G75623 NA non-coding downstream 584205 22005429 ~ 22007415 (-)
LOC111193108 NA non-coding downstream 589336 22001490 ~ 22002284 (-)
G75611 NA non-coding downstream 590205 21941570 ~ 22001415 (-)
G75618 NA non-coding downstream 620532 21968705 ~ 21971088 (-)
G75584 NA non-coding downstream 780859 21810540 ~ 21810761 (-)
G75771 LOC106676625,LOC107104322 non-coding upstream 111523 22739504 ~ 22739793 (-)
G75774 NA non-coding upstream 123339 22751320 ~ 22751545 (-)
G75777 NA non-coding upstream 136944 22764925 ~ 22824298 (-)
G75780 LOC108428391,LOC108275305,LOC100538179,LOC107741823 non-coding upstream 146188 22774169 ~ 22780962 (-)
G75796 NA non-coding upstream 333301 22961282 ~ 22961566 (-)
LOC103024007 LOC108428399 other downstream 17607 22442736 ~ 22574013 (-)
LOC111193105 LOC102794092,LOC108274651,LOC107571202,LOC108428364 other downstream 1318603 21269504 ~ 21273017 (-)
gatd1 pddc1,LOC102788149 other downstream 1520374 21065319 ~ 21071246 (-)
LOC103032014 maf,LOC108428434,LOC108274756,LOC102790406,LOC102298902,LOC101477682,LOC102192535,LOC101173775,LOC100702616,LOC107663990,LOC107565340 other downstream 1843412 20622641 ~ 20748208 (-)
hsd17b12 hsd17b12,hsd17b12a,LOC107661451,LOC107696265,LOC107573907,LOC107716735,LOC107753600 other downstream 2491370 20084428 ~ 20100250 (-)
LOC103033738 LOC103033738,LOC108444230,LOC106560753,LOC105008418,LOC108274439,LOC107549618,LOC107686877 other upstream 696596 23324577 ~ 23366216 (-)
LOC103042310 ucmab,ucma,LOC107720768,LOC107569716,LOC107673257,LOC108275358,LOC107559968 other upstream 1199233 23827214 ~ 23833068 (-)
deaf1 deaf1,LOC107726848 other upstream 1612917 24240898 ~ 24260530 (-)
LOC103025724 tmem80 other upstream 2163211 24791192 ~ 24798616 (-)
G76377 NA other upstream 2286317 24914298 ~ 24920365 (-)

Expression


LOC103026605 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 15.
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LOC103026605 Expression in each Bioproject

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LOC103026605 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 80.
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Co-expression Network