LOC103026897 (LOC103026897,LOC108428397)


Basic Information

Item Value
gene id LOC103026897
gene name LOC103026897,LOC108428397
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 22630187 ~ 22637125 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007244346.3
AACATCACTGCCCCAGGGATTTCCTGGTATTTAAAGGAATGATTAGGATTACTGTGGATGTGTGGAAGAGGTTCTGCTCACTCGCAAAGCCCTCAGAGGATCAAGAAATGGAGGCTGAAATGAAGAATGTTCTGCTCAGGGCAGGAGATCAGCTGAAAGTCCAAGGGAAGATCAATGCCGATGCCAAAAGGTTTCAGATTGATCTGGGATCTAGTTCAAGTGAACTGGCGCTTCACTTCAACCCCCGTTTTTACGAAGACGATAGTGAAACTCCAGTGCTGGTGTGTAATTCACGGAGTGATAATATCTGGGACCAGGAGCAAAGAGACACCCACAATCCTTTTCACCCAGGCTCTACGTTTAAAGTTGTACTGAAGCACACTGGAAGACTGTTTGAGGTGAAGCTACCTGATGGGCAGGAGATTGAGTTCCCCAACCGACAGGGGATGGAGACCATCAGTTATATTCGTGTCAAGGGAGACATCAGCATCACGTCTTTCAAGATGTATTAAGAAAGCATTGAACATCTGATTGAACTGACATTAGAACAAAATAAATGCTCCAGTCTGGCTTTGATAAGGCAAGCAGCCCCCCCTGCTGGATCACACGTGTAGTGCCACCAACATAACGTgtcagtaaattaaaaaaagaaataataaatacaatttcattGCAACCAAA
>XM_022672351.1
GCAGGAgctgagtgagagaGAGGCTGAAATGAAGAATGTTCTGCTCAGGGCAGGAGATCAGCTGAAAGTCCAAGGGAAGATCAATGCCGATGCCAAAAGGTTTCAGATTGATCTGGGATCTAGTTCAAGTGAACTGGCGCTTCACTTCAACCCCCGTTTTTACGAAGACGATAGTGAAACTCCAGTGCTGGTGTGTAATTCACGGAGTGATAATATCTGGGACCAGGAGCAAAGAGACACCCACAATCCTTTTCACCCAGGCTCTACGTTTAAAGTTGTACTGAAGCACACTGGAAGACTGTTTGAGGTGAAGCTACCTGATGGGCAGGAGATTGAGTTCCCCAACCGACAGGGGATGGAGACCATCAGTTATATTCGTGTCAAGGGAGACATCAGCATCACGTCTTTCAAGATGTATTAAGAAAGCATTGAACATCTGATTGAACTGACATTAGAACAAAATAAATGCTCCAGTCTGGCTTTGATAAGGCAAGCAGCCCCCCCTGCTGGATCACACGTGTAGTGCCACCAACATAACGTgtcagtaaattaaaaaaagaaataataaatacaatttcattGCAACCAAA

Function

NR:

description
galectin-2-like isoform X1

GO: NA

KEGG:

id description
K10090 LGALS2; galectin-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007244346.3 True 681 mRNA 0.44 4 22630187 22633443
XM_022672351.1 False 590 mRNA 0.45 4 22630187 22637125

Neighbor

gene id symbol gene type direction distance location
LOC103026605 NA coding downstream 2206 22591620 ~ 22627981 (-)
cntn1 cntn1,LOC108275444 coding downstream 208910 22290073 ~ 22421277 (-)
pdzrn4 pdzrn4 coding downstream 484794 22051238 ~ 22145393 (-)
LOC103022647 NA coding downstream 683244 21912524 ~ 21946943 (-)
irak4 irak4 coding downstream 1038933 21578912 ~ 21591254 (-)
LOC103027474 NA coding upstream 29698 22666823 ~ 22687469 (-)
LOC103027797 aqp9a,LOC103027797,LOC108428394,LOC107552433,LOC107574158,LOC107687613,LOC108275388 coding upstream 58284 22695409 ~ 22702841 (-)
LOC103028124 NA coding upstream 65785 22702910 ~ 22719280 (-)
LOC103028433 LOC108428361 coding upstream 83387 22720512 ~ 22734099 (-)
LOC103030430 NA coding upstream 187448 22824573 ~ 22830793 (-)
G75686 NA non-coding downstream 13160 22585926 ~ 22617027 (-)
G75623 NA non-coding downstream 622772 22005429 ~ 22007415 (-)
LOC111193108 NA non-coding downstream 627903 22001490 ~ 22002284 (-)
G75611 NA non-coding downstream 628772 21941570 ~ 22001415 (-)
G75618 NA non-coding downstream 659099 21968705 ~ 21971088 (-)
G75771 LOC106676625,LOC107104322 non-coding upstream 102379 22739504 ~ 22739793 (-)
G75774 NA non-coding upstream 114195 22751320 ~ 22751545 (-)
G75777 NA non-coding upstream 127800 22764925 ~ 22824298 (-)
G75780 LOC108428391,LOC108275305,LOC100538179,LOC107741823 non-coding upstream 137044 22774169 ~ 22780962 (-)
G75796 NA non-coding upstream 324157 22961282 ~ 22961566 (-)
LOC103024007 LOC108428399 other downstream 56174 22442736 ~ 22574013 (-)
LOC111193105 LOC102794092,LOC108274651,LOC107571202,LOC108428364 other downstream 1357170 21269504 ~ 21273017 (-)
gatd1 pddc1,LOC102788149 other downstream 1558941 21065319 ~ 21071246 (-)
LOC103032014 maf,LOC108428434,LOC108274756,LOC102790406,LOC102298902,LOC101477682,LOC102192535,LOC101173775,LOC100702616,LOC107663990,LOC107565340 other downstream 1881979 20622641 ~ 20748208 (-)
hsd17b12 hsd17b12,hsd17b12a,LOC107661451,LOC107696265,LOC107573907,LOC107716735,LOC107753600 other downstream 2529937 20084428 ~ 20100250 (-)
LOC103033738 LOC103033738,LOC108444230,LOC106560753,LOC105008418,LOC108274439,LOC107549618,LOC107686877 other upstream 687452 23324577 ~ 23366216 (-)
LOC103042310 ucmab,ucma,LOC107720768,LOC107569716,LOC107673257,LOC108275358,LOC107559968 other upstream 1190089 23827214 ~ 23833068 (-)
deaf1 deaf1,LOC107726848 other upstream 1603773 24240898 ~ 24260530 (-)
LOC103025724 tmem80 other upstream 2154067 24791192 ~ 24798616 (-)
G76377 NA other upstream 2277173 24914298 ~ 24920365 (-)

Expression


Co-expression Network