LOC103027474


Basic Information

Item Value
gene id LOC103027474
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 22666823 ~ 22687469 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007244348.3
ATTATTTGACAGTCACAGTGCTCCATGTTCAGTATGTAGCCTCCTTCACAGCTGAGCATGAAATGATGTGTCAGTTTCCACAGACAGTCTGCAGTCTCTGagCGGCAACTTCCAATCTGTGAATCACTCCACTAGTCAAGACAGGACAAGTCTGCGAATCCATATCCATCCCTCTGTTCCTGGAAATGACAGACACTGAAGTTGGAGGCACTGGAGCAACGATGAAGATTCTAACAAAAACAGTcctttcttttatctttttaatcctCCTTACAATCACTGGAAGCCAATTGGAAGCCAAAGAAAACACAACAAGTGCTGTCGAGGAGGTTCACCAGACTAATGATGTGAAGGAGCCGCTGGTTGTAAAGTCAacttttcacatgcatttacaaGGCAATGTGTTTGAGGATATGTGCAAAATTCTACCATTTCATCCAGACACTCTCTACACTTGCAACTACAACACAAGCAGCCCTCTGGTCATCATCATTCATGGTTGGACGTTGAATGGAATCATGGAGGAGTGGATATACAGGATGGCCTCGGCCCTCAAAACAAGGCTGGGACACGTGAATGTGCTGATCAACGACTGGAGACCCCTAGCCTTTAAGCCGTACCCAGTCGCAGCCAAGAACAGCAGACAGGTGGGATTGGATGTGGCGACGCTGCTGCAGTGGCTGGAGGAGACCACCCAGCTCTCCATGGATAAGGTCCACCTGATTGGATACAGCTTGGGAGCACATGTGGCTGGGTTTGCAGGAAGTCATTTTAAGAAAGCCAGAAAGCTGGGCCGTATAACAGGTCTGGATCCCGCAGGCCCAAATTTTGAGGGAGTTCCTGCTTTTGACAGACTGTCTCCTGACGATGCCAAGTTTGTAGATGCTGTGCACACATTTTCTAAGACCGGGATTGGCATCCGGCAGTCTGTCGGCCACGCTGATTTCTATCCGAATGGAGGCTCCTTCCAGCCTGGATGCAAGATAACAGACATAtatgaaaatgtttattattttgggTTGCAAGGTTTACCAAAAACCATAAAATGTGCTCACCAGCGAGCTGTCCACCTCTTCACTGACTCCCTTCTGAACACGGATAAAGAAATGACTGGCTTCCGCTGCCGGAATGATGCTGCATTTGATAAAGGACTCTGTCTGGACTGCAAAAAGAATCGCTGTAACACTCTGGGCTATGGTATTAAAAAGGTCCACACTAAAGGCACCAAAGGCTTCTATCTGAAGACTGGACCCCAAACACCGTTTAAAGTCTACCACTACCAGGTTAAAGTCATGTTGGTCAATCTGATCGAGCCTGTCAGAGCCTCCCTTTCTATGTCTGTTACTGGAACCAAAGGAGAGACTACTCCTCAGTCAGTCACTCTGTCCCAAGAATATGCTGAGAACACTACATACTCCTCCCTGTTCGCGGTGGACTCAGAGCTGGGGGAACTGCAGGCTTTGCGGCTGCATTGGAAAGAAGAGCGGAGCTGGTGGACTCATGTCACAGACTTCATGAGCGGGAGTGGAAGCAGGCAGGACACAGAGCTCAGCGTGGCGAGGATACGGCTCAAATCTGGAGAGAGCCAGGAAAAGACTTGGTTCTGTGGTCAAGCAGGAAACATCACACATCTGAAACCCttagaagagcaagagtttgtTCGTTGTCCTCCAGATACTTTCAAAAGGAGGACAATCGGCGGTACATCTTCCCTGCTGCTATAAACACACAAGAACATGCTGGAACAGGAATCTGTGAAAACTTTAGTGAGGGAAACAAGGAAATAAGCTATAAATCTGCTCAGAAAAAcctaaattaaaaatgtgaacGCTGTGGTTTAAAAATGTCAGGAGAAATGTTTGTCACACATGTTTTCATTTGAGCctttttattaatgcatttcAAGTACTCCAAAAATTACATCTCTTTGCACAATACGGTTTGAAATGTTAAGTAAAAATGTTCAAAGTGAACAAAAATTTAGgtactgtataaaacacagttaACATTAA
>XM_022672350.1
TATTATTTGACAGTCACAGTGCTCCATGTTCAGTATGTAGCCTCCTTCACAGCTGAGCATGAAATGATGTGTCAGTTTCCACAGACAGTCTGCAGTCTCTGagCGGCAACTTCCAATCTGTGAATCACTCCACTAGTCAAGACAGGACAAGTCTGCGAATCCATATCCATCCCTCTGTTCCTGGAAATGACAGACACTGAAGTTGGAGGCACTGGAGCAACGATGAAGATTCTAACAAAAACAGTcctttcttttatctttttaatcctCCTTACAATCACTGGAAGCCAATTGGAAGCCAAAGAAAACACAACAAGTGCTGTCGAGGAGGTTCACCAGACTAATGATGTGAAGGAGCCGCTGGTTGTAAAGTCAacttttcacatgcatttacaaGGCAATGTGTTTGAGGATATGTGCAAAATTCTACCATTTCATCCAGACACTCTCTACACTTGCAACTACAACACAAGCAGCCCTCTGGTCATCATCATTCATGGTTGGACGTTGAATGGAATCATGGAGGAGTGGATATACAGGATGGCCTCGGCCCTCAAAACAAGGCTGGGACACGTGAATGTGCTGATCAACGACTGGAGACCCCTAGCCTTTAAGCCGTACCCAGTCGCAGCCAAGAACAGCAGACAGGTGGGATTGGATGTGGCGACGCTGCTGCAGTGGCTGGAGGAGACCACCCAGCTCTCCATGGATAAGGTCCACCTGATTGGATACAGCTTGGGAGCACATGTGGCTGGGTTTGCAGGAAGTCATTTTAAGAAAGCCAGAAAGCTGGGCCGTATAACAGGTCTGGATCCCGCAGGCCCAAATTTTGAGGGAGTTCCTGCTTTTGACAGACTGTCTCCTGACGATGCCAAGTTTGTAGATGCTGTGCACACATTTTCTAAGACCGGGATTGGCATCCGGCAGTCTGTCGGCCACGCTGATTTCTATCCGAATGGAGGCTCCTTCCAGCCTGGATGCAAGATAACAGACATAtatgaaaatgtttattattttgggTTGCAAGGTTTACCAAAAACCATAAAATGTGCTCACCAGCGAGCTGTCCACCTCTTCACTGACTCCCTTCTGAACACGGATAAAGAAATGACTGGCTTCCGCTGCCGGAATGATGCTGCATTTGATAAAGGACTCTGTCTGGACTGCAAAAAGAATCGCTGTAACACTCTGGGCTATGGTATTAAAAAGGTCCACACTAAAGGCACCAAAGGCTTCTATCTGAAGACTGGACCCCAAACACCGTTTAAAGTCTACCACTACCAGGTTAAAGTCATGTTGGTCAATCTGATCGAGCCTGTCAGAGCCTCCCTTTCTATGTCTGTTACTGGAACCAAAGGAGAGACTACTCCTCAGTCAGTCACTCTGTCCCAAGAATATGCTGAGAACACTACATACTCCTCCCTGTTCGCGGTGGACTCAGAGCTGGGGGAACTGCAGGCTTTGCGGCTGCATTGGAAAGAAGAGCGGAGCTGGTGGACTCATGTCACAGACTTCATGAGCGGGAGTGGAAGCAGGCAGGACACAGAGCTCAGCGTGGCGAGGATACGGCTCAAATCTGGAGAGAGCCAGGAAAAGTAAATGAGGCCTGCAGTTACACCTCTTTAAAGGACTTGGTTCTGTGGTCAAGCAGGAAACATCACACATCTGAAACCCttagaagagcaagagtttgtTCGTTGTCCTCCAGATA

Function

GO: NA

KEGG:

id description
K22283 LIPC; hepatic triacylglycerol lipase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007244348.3 True 2012 mRNA 0.46 10 22666823 22687468
XM_022672350.1 False 1711 mRNA 0.48 10 22667158 22687469

Neighbor

gene id symbol gene type direction distance location
LOC103026897 LOC103026897,LOC108428397 coding downstream 29698 22630187 ~ 22637125 (-)
LOC103026605 NA coding downstream 38842 22591620 ~ 22627981 (-)
cntn1 cntn1,LOC108275444 coding downstream 245546 22290073 ~ 22421277 (-)
pdzrn4 pdzrn4 coding downstream 521430 22051238 ~ 22145393 (-)
LOC103022647 NA coding downstream 719880 21912524 ~ 21946943 (-)
LOC103027797 aqp9a,LOC103027797,LOC108428394,LOC107552433,LOC107574158,LOC107687613,LOC108275388 coding upstream 7940 22695409 ~ 22702841 (-)
LOC103028124 NA coding upstream 15441 22702910 ~ 22719280 (-)
LOC103028433 LOC108428361 coding upstream 33043 22720512 ~ 22734099 (-)
LOC103030430 NA coding upstream 137104 22824573 ~ 22830793 (-)
LOC103029587 LOC108428387,LOC108274707 coding upstream 145295 22832764 ~ 22950022 (-)
G75686 NA non-coding downstream 49796 22585926 ~ 22617027 (-)
G75623 NA non-coding downstream 659408 22005429 ~ 22007415 (-)
LOC111193108 NA non-coding downstream 664539 22001490 ~ 22002284 (-)
G75611 NA non-coding downstream 665408 21941570 ~ 22001415 (-)
G75771 LOC106676625,LOC107104322 non-coding upstream 52035 22739504 ~ 22739793 (-)
G75774 NA non-coding upstream 63851 22751320 ~ 22751545 (-)
G75777 NA non-coding upstream 77456 22764925 ~ 22824298 (-)
G75780 LOC108428391,LOC108275305,LOC100538179,LOC107741823 non-coding upstream 86700 22774169 ~ 22780962 (-)
G75796 NA non-coding upstream 273813 22961282 ~ 22961566 (-)
LOC103024007 LOC108428399 other downstream 92810 22442736 ~ 22574013 (-)
LOC111193105 LOC102794092,LOC108274651,LOC107571202,LOC108428364 other downstream 1393806 21269504 ~ 21273017 (-)
gatd1 pddc1,LOC102788149 other downstream 1595577 21065319 ~ 21071246 (-)
LOC103032014 maf,LOC108428434,LOC108274756,LOC102790406,LOC102298902,LOC101477682,LOC102192535,LOC101173775,LOC100702616,LOC107663990,LOC107565340 other downstream 1918615 20622641 ~ 20748208 (-)
hsd17b12 hsd17b12,hsd17b12a,LOC107661451,LOC107696265,LOC107573907,LOC107716735,LOC107753600 other downstream 2566573 20084428 ~ 20100250 (-)
LOC103033738 LOC103033738,LOC108444230,LOC106560753,LOC105008418,LOC108274439,LOC107549618,LOC107686877 other upstream 637108 23324577 ~ 23366216 (-)
LOC103042310 ucmab,ucma,LOC107720768,LOC107569716,LOC107673257,LOC108275358,LOC107559968 other upstream 1139745 23827214 ~ 23833068 (-)
deaf1 deaf1,LOC107726848 other upstream 1553429 24240898 ~ 24260530 (-)
LOC103025724 tmem80 other upstream 2103723 24791192 ~ 24798616 (-)
G76377 NA other upstream 2226829 24914298 ~ 24920365 (-)

Expression


Co-expression Network