LOC103028124


Basic Information

Item Value
gene id LOC103028124
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 22702910 ~ 22719280 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007244350.3
AGTCAGAATGTGGGACACTCCGCTCAGGGTTCTAGAACTCCGGGCTGGGTGGCGGGAGTCAGAGTTCAGCACGCGCCTCCTGCCGACCAATCGATGTTGTGTGGGAACTTGTAGGAgtgtcagttcagttcagcgcaGCAGCGGCAGGAGGACTCGGTTACAGACCCGGAGTTCAgcttgtctttctctctctcagagacaCAGCCTGCTGCTGACCTGCCGCTGCGCGGGGAGCGGGGGAACTCCTGCAGGAGATAAGCTGGGTTTAAACTCGCTGTGAGCGGGATGCAGTCTCCACTTTAAGATGAAGTGAACGCTGaCAAATCCAATCCAGTCCTGATGAGAACTCGTCAGGGTCGTCATGTAGGAGGTTGATACAATAGGACACTGTTAATGGACAAGAGCAACTGTTGTCACAGTAGACCCCAGAGTTGAAGCACTGCTTGATTTCTTCTCCTCTCATTTTGTGTGCACACAAACTCATAATGGCATTGCATGAAAACAGTGGGCTAGAGGAAGACCACATGCATCTGGATGATAATCCATATGACCAAGTGCAAGAGTCGCACACTGAGGGACCACCAGGATCCTTTGGGTTGAGGGTGCAGGTTCAAGATATACAGGGCCGTCCGTACGTGATTCTAAACGGTCAGGGTGCTCACAAGTCCCCGCAGCCTCCTGCCTACCCTGATGTCTTCTACCTGGATCAGCCATACCAAGAGTATGTTTCAACCCTGAATGGTCGAGGCACCAGCATCTCTGGACCACTAATGGATAGTAGATCAGTGAGGCATCATCATGGCGCATCTTCAGTTCCTGTGTCCAACCCTGGATCTCCCTTGCTGAACTACCAGAGACACCCTGAGCTCCTCAAACCTTATGACCCAATGTCCAACAGTCTGGACCTACAAAGACCTACAAATCACCACCATTCTGATAATATGTCTGACCCTGACTTAAACCGGTCTAGCTCAAACTCTTCACCTGTTTATGCATCTCATGTCATGGTAAAGAGAGCCAAGATTCCTGTGCCTGGGACTGGGAGAGAAAGAGGCCATGACCAGCTGGACTCTGAAGTACCAACAGCAGAAAGCGTACCCTACCGCCACTCGCACATCATTTGTAGACTCTCTGTACCTGACGGTGGCAGTGAGCCGCAGCGATCCTCACAAAAATCTAGTAGAGCTAGACACCGGAATCAAATGGGTCCGGAGGGGAGGAGACAATCACACAGTATCGGAGCGTCCAGCTCTGGTGATTCCTCCAGGTCAAGCCCAGTGCATGCAGGATTACGAGGAATGGGACAAGGAGCAGACGCTATGCCAGCCTCCTCTTGGAATGACCCCCTGCTGAGGACGAAGACAGGAAGGAGCATTTATGAGGCTGATATACGATCTCTGACTGCGGCCCAGTTTGAAGAACAGCAAAGGGAAGTGGTGAAGCCACCAAGGTCAGGAAGGGCCAGCTGCAGAATGGAGAGGGCAAAACACAATGGTGACTATGCCAGCCCagagagagaggcacagGCTACCCCTGATATTTTGAAAGGACAGCGAGAGCTTCTCGACCAGCCAGACGAAGATGCAACTAAACTAATGCTGTTCAACTACCTCAAAGAAGGGAGTGGTGAGAGTGATGAGATCATCAGGCAGAAGGTGAATCTGCTGTTTGAAAAGATCCAGATGTTGAGGTCAAGTGCTGTCCAGAATGTGGAGGAGCTTTCTGACTCAGTGGCTGAAGTAAAAGAGCTCCAGGACAAAAAGGCAGCACTGGAGAGTGAGGTAACTCAGCTCAAACAACAACTGGAAGAAGAAATTAAgAACAGAGAGAGTCTGTCAGATGCAAGTGGGAAGAGTACAGAGGAACTGAAGAAGCTGCAGGACAAGTTAAGTAGGAGTGAGCAGGAGCAAGTGTCTCTCCGTCAGCGACTCACTGacatggagaaagagctgcaaGACTCACTTGAAAAACTCTTGCAGATAAAGAGGGAGCGAGAGCAGAgccgggcagaaactaaaggtTTGCAGCAGCAGCTTTCAGACATGCATGATGAGCTGGACAACACTAAAAGCTCAGAgcaaggggagagagagatcaTTCTACAGGATCTTGTTAATTTGCGCATGGAGTTCCAGGAGTTGCAGCAGGtgcaggaggagcaggaggaacTGCTGCGCTGGAAAGAGAGGGAGCTCACAGCCTTGAAGGGGGCTCTAGAAGAAGAAATCTCAGCCCATGCTAAAGAAGTGGAAATGATGAAAGATCAACACAAGGATGAGGTGCAGAAGCTACTCAAGGCCATTGAAGAGGCTAAAGAGGGCATGGCAGCTTTGGGTCTACAAAAATCAGAGGTGGAGGCTGAACGAGGAGCAAGTAGGGCCCATGTGCAGGAGCTAACCTTGGCTAAAGAGCTGTTACTCAGCCAAGTCCAAAGCCTGGAGACTCAAATCACCACCCTCAGCAACATCATACAGCAGGCCAAGAACCAGGAGAGCCAGCTCAGACAACGTCTGGACAGGATGATGGAGGAGAAGCAGATCCTTGAGGAGGAGTTTTCAGAGGTGAGACAGCAAGAAGAGGACATGTGTGGCGCAAACAGATCTCTGACCATACACCTGGAGGACACACAGAGTGAGCTAACCAAGCTCAACAGTGAGCACCGACATCTGAAGGAGAAACTGAAGGAAGAGGAGAGACAGGTGGAGGAGCTGAGACACATCAAAAAGGAGCTGGAAGAGAAGCGGAAGAATCAAGATAGAGCTTTTGAAAAAATACAGGAAGAGATGAATGCAGTTCTAATGGCTTCAGAGAGGGAGACTCAGAGATTGCAGGATCAAGtggatgaagccagagagcacaGCCTGAAGGAGCTCAGTGTGCTGCGCACACAGCTACACAACACACAAGCTGAgctggagaaacacacacacgctgcagAAGAGTGCCAGAAAGAGctttGTGCACTAGAGGCTGAGTTGGCTCAGCGAGAGGGGGAGTTGGAGCAGGCAGAGCTAAAGTGTAAGCTGCTGGAGAAGAAAGTAGAGGAGCTGGAAGAGAGCAGCAAAATGACACATGATGACCAAGACAGACATTTCAAACTAATGGAGGCACGAGTGACTCAGCTCCAGGAGGCTCTGGCAGAGGAACGTAGCGGCAGCGACTCATTGATGCAGAGAATGGAGAGAGTTGGAGAGCAGGTAGAGCAGGCAAGAGCAGAGTTGCTGCAGGAGCGAGCTGTTAGGCAGGATCTGGAGTGTGACAAGATCAATTTGGAGAGACAGAATAAGGACTTGAAAGGTCGCATATCCCACCTAGAAGGCTCACAAAGATCAGGCCAAGAGGGTCTTGTGTCCAAACTGGAGTGTCGTATTCAGGAGCTGGAGGAGAGACTGCTGGAAGAGGAGAGAGACAGTAACACCTTGCAGCAGGCGAACCGTAAACTGGAGAGAAAGCTCAAGGAGATGAGCATGCAGGTGAATGAAGAGCAGCTCTCTCTGCAGAACCAGAGGGACCAGTTGACTCTGCGACTGAAGACACTGAAGAGGCAGCTGGATGAGGCAGAGGAGGAGATAGAGAGACTCGAGCACAGCAAAAAGAAACTTCAGAGAGAACTGGACGATCAGCAGGAGACCAATGAGCAACTCCAGAGCCAACTCACAGCCCTGCAAACTGAGCTCAGGCGTAAGAAGAAACCAGTTCTGAAGAATATGGGTGAAGATGACGATGAGGATGAAGATGGGAACGTGAGCTCAGCATGagtcttaaaaaaacacaaagcaacTGACTGTTActgcatattataataataatataaattattgtcctgttttattttccttttactGGACTGTGTATCATTAAATGTGAACCTGCCTTTGACTAACCAGCAAGTTATAATAGTGTGATCTTCTGCCCCCCTCTGGCAATACAAGGGAAGAGCATTGCTTCAGGCATGttgctcttttttgttttgttttgtttttgatacTGCCTAAAACTATTAACCAAACTCAGGGAAGAATTTCATTACACGTCATTAACTTGCTCAACACGTCATAACTGCTCAAGTGCCTTATACAATGCTTTTATCAGACTATCCAGGTCTGTTAtagttaatttaaataaaggacATATAAAAGAAA
>XM_015604574.2
CAGTCAGAATGTGGGACACTCCGCTCAGGGTTCTAGAACTCCGGGCTGGGTGGCGGGAGTCAGAGTTCAGCACGCGCCTCCTGCCGACCAATCGATGTTGTGTGGGAACTTGTAGGAgtgtcagttcagttcagcgcaGCAGCGGCAGGAGGACTCGGTTACAGACCCGGAGTTCAgcttgtctttctctctctcagagacaCAGCCTGCTGCTGACCTGCCGCTGCGCGGGGAGCGGGGGAACTCCTGCAGGAGATAAGCTGGGTTTAAACTCGCTGTGAGCGGGATGCAGTCTCCACTTTAAGATGAAGTGAACGCTGaCAAATCCAATCCAGTCCTGATGAGAACTCGTCAGGGTCGTCATGTAGGAGGTTGATACAATAGGACACTGTTAATGGACAAGAGCAACTGTTGTCACAGTAGACCCCAGAGTTGAAGCACTGCTTGATTTCTTCTCCTCTCATTTTGTGTGCACACAAACTCATAATGGCATTGCATGAAAACAGTGGGCTAGAGGAAGACCACATGCATCTGGATGATAATCCATATGACCAAGTGCAAGAGTCGCACACTGAGGGACCACCAGGATCCTTTGGGTTGAGGGTGCAGGTTCAAGATATACAGGGCCGTCCGTACGTGATTCTAAACGGTCAGGGTGCTCACAAGTCCCCGCAGCCTCCTGCCTACCCTGATGTCTTCTACCTGGATCAGCCATACCAAGAGTATGTTTCAACCCTGAATGGTCGAGGCACCAGCATCTCTGGACCACTAATGGATAGTAGATCAGTGAGGCATCATCATGGCGCATCTTCAGTTCCTGTGTCCAACCCTGGATCTCCCTTGCTGAACTACCAGAGACACCCTGAGCTCCTCAAACCTTATGACCCAATGTCCAACAGTCTGGACCTACAAAGACCTACAAATCACCACCATTCTGATAATATGTCTGACCCTGACTTAAACCGGTCTAGCTCAAACTCTTCACCTGTTTATGCATCTCATGTCATGGTAAAGAGAGCCAAGATTCCTGTGCCTGGGACTGGGAGAGAAAGAGGCCATGACCAGCTGGACTCTGAAGTACCAACAGCAGAAAGCGTACCCTACCGCCACTCGCACATCATTTGTAGACTCTCTGTACCTGACGGTGGCAGTGAGCCGCAGCGATCCTCACAAAAATCTAGTAGAGCTAGACACCGGAATCAAATGGGTCCGGAGGGGAGGAGACAATCACACAGTATCGGAGCGTCCAGCTCTGGTGATTCCTCCAGGTCAAGCCCAGTGCATGCAGGATTACGAGGAATGGGACAAGGAGCAGACGCTATGCCAGCCTCCTCTTGGAATGACCCCCTGCTGAGGACGAAGACAGGAAGGAGCATTTATGAGGCTGATATACGATCTCTGACTGCGGCCCAGTTTGAAGAACAGCAAAGGGAAGTGGTGAAGCCACCAAGGTCAGGAAGGGCCAGCTGCAGAATGGAGAGGGCAAAACACAATGGTGACTATGCCAGCCCagagagagaggcacagCGAGAGCTTCTCGACCAGCCAGACGAAGATGCAACTAAACTAATGCTGTTCAACTACCTCAAAGAAGGGAGTGGTGAGAGTGATGAGATCATCAGGCAGAAGGTGAATCTGCTGTTTGAAAAGATCCAGATGTTGAGGTCAAGTGCTGTCCAGAATGTGGAGGAGCTTTCTGACTCAGTGGCTGAAGTAAAAGAGCTCCAGGACAAAAAGGCAGCACTGGAGAGTGAGGTAACTCAGCTCAAACAACAACTGGAAGAAGAAATTAAgAACAGAGAGAGTCTGTCAGATGCAAGTGGGAAGAGTACAGAGGAACTGAAGAAGCTGCAGGACAAGTTAAGTAGGAGTGAGCAGGAGCAAGTGTCTCTCCGTCAGCGACTCACTGacatggagaaagagctgcaaGACTCACTTGAAAAACTCTTGCAGATAAAGAGGGAGCGAGAGCAGAgccgggcagaaactaaaggtTTGCAGCAGCAGCTTTCAGACATGCATGATGAGCTGGACAACACTAAAAGCTCAGAgcaaggggagagagagatcaTTCTACAGGATCTTGTTAATTTGCGCATGGAGTTCCAGGAGTTGCAGCAGGtgcaggaggagcaggaggaacTGCTGCGCTGGAAAGAGAGGGAGCTCACAGCCTTGAAGGGGGCTCTAGAAGAAGAAATCTCAGCCCATGCTAAAGAAGTGGAAATGATGAAAGATCAACACAAGGATGAGGTGCAGAAGCTACTCAAGGCCATTGAAGAGGCTAAAGAGGGCATGGCAGCTTTGGGTCTACAAAAATCAGAGGTGGAGGCTGAACGAGGAGCAAGTAGGGCCCATGTGCAGGAGCTAACCTTGGCTAAAGAGCTGTTACTCAGCCAAGTCCAAAGCCTGGAGACTCAAATCACCACCCTCAGCAACATCATACAGCAGGCCAAGAACCAGGAGAGCCAGCTCAGACAACGTCTGGACAGGATGATGGAGGAGAAGCAGATCCTTGAGGAGGAGTTTTCAGAGGTGAGACAGCAAGAAGAGGACATGTGTGGCGCAAACAGATCTCTGACCATACACCTGGAGGACACACAGAGTGAGCTAACCAAGCTCAACAGTGAGCACCGACATCTGAAGGAGAAACTGAAGGAAGAGGAGAGACAGGTGGAGGAGCTGAGACACATCAAAAAGGAGCTGGAAGAGAAGCGGAAGAATCAAGATAGAGCTTTTGAAAAAATACAGGAAGAGATGAATGCAGTTCTAATGGCTTCAGAGAGGGAGACTCAGAGATTGCAGGATCAAGtggatgaagccagagagcacaGCCTGAAGGAGCTCAGTGTGCTGCGCACACAGCTACACAACACACAAGCTGAgctggagaaacacacacacgctgcagAAGAGTGCCAGAAAGAGctttGTGCACTAGAGGCTGAGTTGGCTCAGCGAGAGGGGGAGTTGGAGCAGGCAGAGCTAAAGTGTAAGCTGCTGGAGAAGAAAGTAGAGGAGCTGGAAGAGAGCAGCAAAATGACACATGATGACCAAGACAGACATTTCAAACTAATGGAGGCACGAGTGACTCAGCTCCAGGAGGCTCTGGCAGAGGAACGTAGCGGCAGCGACTCATTGATGCAGAGAATGGAGAGAGTTGGAGAGCAGGTAGAGCAGGCAAGAGCAGAGTTGCTGCAGGAGCGAGCTGTTAGGCAGGATCTGGAGTGTGACAAGATCAATTTGGAGAGACAGAATAAGGACTTGAAAGGTCGCATATCCCACCTAGAAGGCTCACAAAGATCAGGCCAAGAGGGTCTTGTGTCCAAACTGGAGTGTCGTATTCAGGAGCTGGAGGAGAGACTGCTGGAAGAGGAGAGAGACAGTAACACCTTGCAGCAGGCGAACCGTAAACTGGAGAGAAAGCTCAAGGAGATGAGCATGCAGGTGAATGAAGAGCAGCTCTCTCTGCAGAACCAGAGGGACCAGTTGACTCTGCGACTGAAGACACTGAAGAGGCAGCTGGATGAGGCAGAGGAGGAGATAGAGAGACTCGAGCACAGCAAAAAGAAACTTCAGAGAGAACTGGACGATCAGCAGGAGACCAATGAGCAACTCCAGAGCCAACTCACAGCCCTGCAAACTGAGCTCAGGCGTAAGAAGAAACCAGTTCTGAAGAATATGGGTGAAGATGACGATGAGGATGAAGATGGGAACGTGAGCTCAGCATGagtcttaaaaaaacacaaagcaacTGACTGTTActgcatattataataataatataaattattgtcctgttttattttccttttactGGACTGTGTATCATTAAATGTGAACCTGCCTTTGACTAACCAGCAAGTTATAATAGTGTGATCTTCTGCCCCCCTCTGGCAATACAAGGGAAGAGCATTGCTTCAGGCATGttgctcttttttgttttgttttgtttttgatacTGCCTAAAACTATTAACCAAACTCAGGGAAGAATTTCATTACACGTCATTAACTTGCTCAACACGTCATAACTGCTCAAGTGCCTTATACAATGCTTTTATCAGACTATCCAGGTCTGTTAtagttaatttaaataaaggacATATAAAAGAAA

Function

GO: NA

KEGG:

id description
K21110 CGNL1; cingulin-like protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007244350.3 True 4142 mRNA 0.49 20 22702910 22719279
XM_015604574.2 False 4116 mRNA 0.49 20 22702910 22719280

Neighbor

gene id symbol gene type direction distance location
LOC103027797 aqp9a,LOC103027797,LOC108428394,LOC107552433,LOC107574158,LOC107687613,LOC108275388 coding downstream 69 22695409 ~ 22702841 (-)
LOC103027474 NA coding downstream 15441 22666823 ~ 22687469 (-)
LOC103026897 LOC103026897,LOC108428397 coding downstream 65785 22630187 ~ 22637125 (-)
LOC103026605 NA coding downstream 74929 22591620 ~ 22627981 (-)
cntn1 cntn1,LOC108275444 coding downstream 281633 22290073 ~ 22421277 (-)
LOC103028433 LOC108428361 coding upstream 1232 22720512 ~ 22734099 (-)
LOC103030430 NA coding upstream 105293 22824573 ~ 22830793 (-)
LOC103029587 LOC108428387,LOC108274707 coding upstream 113484 22832764 ~ 22950022 (-)
LOC103030744 LOC103030744,LOC108428386,LOC107549661,LOC107695010,LOC106560749,LOC107745110 coding upstream 250091 22969371 ~ 23018713 (-)
LOC103035716 znf609,LOC108275264,LOC107695009,LOC107756519 coding upstream 305966 23025246 ~ 23146530 (-)
G75686 NA non-coding downstream 85883 22585926 ~ 22617027 (-)
G75623 NA non-coding downstream 695495 22005429 ~ 22007415 (-)
LOC111193108 NA non-coding downstream 700626 22001490 ~ 22002284 (-)
G75611 NA non-coding downstream 701495 21941570 ~ 22001415 (-)
G75771 LOC106676625,LOC107104322 non-coding upstream 20224 22739504 ~ 22739793 (-)
G75774 NA non-coding upstream 32040 22751320 ~ 22751545 (-)
G75777 NA non-coding upstream 45645 22764925 ~ 22824298 (-)
G75780 LOC108428391,LOC108275305,LOC100538179,LOC107741823 non-coding upstream 54889 22774169 ~ 22780962 (-)
G75796 NA non-coding upstream 242002 22961282 ~ 22961566 (-)
LOC103024007 LOC108428399 other downstream 128897 22442736 ~ 22574013 (-)
LOC111193105 LOC102794092,LOC108274651,LOC107571202,LOC108428364 other downstream 1429893 21269504 ~ 21273017 (-)
gatd1 pddc1,LOC102788149 other downstream 1631664 21065319 ~ 21071246 (-)
LOC103032014 maf,LOC108428434,LOC108274756,LOC102790406,LOC102298902,LOC101477682,LOC102192535,LOC101173775,LOC100702616,LOC107663990,LOC107565340 other downstream 1954702 20622641 ~ 20748208 (-)
hsd17b12 hsd17b12,hsd17b12a,LOC107661451,LOC107696265,LOC107573907,LOC107716735,LOC107753600 other downstream 2602660 20084428 ~ 20100250 (-)
LOC103033738 LOC103033738,LOC108444230,LOC106560753,LOC105008418,LOC108274439,LOC107549618,LOC107686877 other upstream 605297 23324577 ~ 23366216 (-)
LOC103042310 ucmab,ucma,LOC107720768,LOC107569716,LOC107673257,LOC108275358,LOC107559968 other upstream 1107934 23827214 ~ 23833068 (-)
deaf1 deaf1,LOC107726848 other upstream 1521618 24240898 ~ 24260530 (-)
LOC103025724 tmem80 other upstream 2071912 24791192 ~ 24798616 (-)
G76377 NA other upstream 2195018 24914298 ~ 24920365 (-)

Expression


Co-expression Network