otud7a (otud7a,si:dkey-37f18.2,LOC107715690,LOC107752330,LOC107659507,LOC107550219,LOC107698115,LOC107598848,LOC108275340)


Basic Information

Item Value
gene id otud7a
gene name otud7a,si:dkey-37f18.2,LOC107715690,LOC107752330,LOC107659507,LOC107550219,LOC107698115,LOC107598848,LOC108275340
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 16618151 ~ 16738665 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007246487.3
TCTGCTGCATCGCTGAATGGCACGGGGATGAGGAGCGGTAGCGGCGGCTAGACGGAGGCTGTTTTGTTATCCGGTTTTAAAGCCATATTTCGGGAAGGACGGATTTGTTTGGCTGGTGTTCGGCTGAAGAGCGAGGGATAGCGGATGACGGATGAAAGGTATGGCCGTGACCCCAAGTCTTCCTTGTCTCTCCTCCGTCTTGTAGAAGTCATGGATTAAAgaaagggagtgtgtgtgtgtgtgtgtgtgtgagaaagagagagtgtgtgactgtgtgtgcaTGAGCTCCTGGACATAACCATGGTGGTGAGATGGCAGCTGAAGAACTCTCAGTGAGGACACAGAAAATGAGAACGTGACGCTCTGGCTACCACAAAGGCAACTGCTGCAGGCTGGGCAGCACAGCCACATGATCACATGACTCTGGACATGGACGCGGTCCTGTCAGACTTTGTTCGGTCCACAGGGGCCGAACCGGGTCTGGCACGAGACCTGCTGGAAGGTAAAAACTGGGACCTGAGCGCTGCTCTGAGTGACTATGAGCAGTTACGGCAGGTCCACACTGCCAACCTGCCCCAGGTGTTTAACGAGGGCCGTTACTACAAGCAGCCAGAGCGCAGCGGCACCCCCCAGCACATCAACAAGCTGGAACAATGCCTGCAGAGGCAGGAGGAGAACACTCAGGAGAAGCGTCTCTCTCGGGGCATCTCCCATGCCAGCTCTGCCATCATGTCGCTGGCGCGGATGCATGTGACGGGCGAGTGTGCCAGGGAACAGTTCCCTCTAGAGATGCCCATCTACACCTTCCAGCTGCCCGACCTGAGCGTGTACAGCGAGGACTTCCGCAGCTTCATCGAGCGAGACCTAATTGAGCAATCCACTATGGTGGCCCTGGAGCAGGCGGGTCGTCTGAACTGGTGGTCCACCATGTGTACCAGCTGTAAGAAGCTCCTGCCATTAGCAACAACTGGTGATGGCAACTGCCTACTGCATGCTGCTTCCTTAGgAATGTGGGGCTTCCATGACAGAGACCTGGTGCTGAGGAAGAGCTTGTATGCCATGATGAAGAGTGGGGCTGAAAGAGAGGCCCTAAAGAGGAGGTGGAGATGGCAACAGACGCAGCAAAACAAAGAGtctGGGTTGGTGTACACAGAGgaggagtgggagagagagtggAACGAGTTACTGAAGTTGGCCTCCAGCGAGCCTCGCATACACTTAAGCAAGAACGGCAACACCAGTGGAGGTGTGGATAACTCAGAAGATCCTGTGTATGAGAGTCTGGAGGAGTTCCATGTGTTTGTGTTGGCACATGTGCTGAGGCGGCCTATCGTGGTTGTTGCTGATACCATGCTCCGAGACTCTGGAGGAGAAGCATTTGCACCTATACCGTTTGGTGGGCTCTATCTGCCTCTGGAGGTTCCCCCTAACCGCTGCCACTGCTCCCCGCTGGTTCTGGCCTACGACCAGGCCCACTTCTCTGCTCTGGTGTCCATGGAGCAGAGAGATcagcagagagagcaagCCGTTATTCCCCTGACAGACTCCGAGCACAAGCTGCTAGCGCTGCACTTTGCGGTTGATCCGGGCAGAGATTGGGAGTGGGGGAGGGACGACAATGACAACACCAAGCTGGCCAAtcttATCCTATCACTGGAAGCGAAGCTAAACCTCTTGCACAGTTATATGAATGTAACCTGGATTCGAATACCATCAGAGACAAGGGCTCCTCTTGCCCAGCCAGAGTCACCCACTGCTTCAGCCGGTGAAGATGTGCAGTCTCTAGCCGAATCCATGGACTCAGACCGTGAGTCTGTCTGCAGTAATTCCAACGTCAATAACGGCAAATCCGGCAAAGAGAAGGACAAGGAGAAGCAGCGCAAGGACAAAGACAAAGTTCGTGCCGACTCTGTGGCCAACAAGCTGGGAAGCTTCAGTAAGACTCTAGGCATCAAGCTCAAAAAGAACATGGGTGGCCTGGGTGGACTGGTACATGGCAAAATGAGCAAGTCTGGTTCGACGAACGGGCGCACTGTGGAGAACGGTGAGCAGAAGCCTAAGAAAAAGGACTCCAAAACACGCAAAGGGAGCAAAGAGGAGTCGGGCCAGTCCGCCAGCACCTCCTCATCTGAGAAAGCCACTAGTCCTTCTCCTACGGACAGAGCTTCAGGCAGCTCTCCTGGGGAGAGACAGCCAGGCTCAGGCAAAAACCCAGGGGACCGCTCACTGGACAACTGGAAGTACAGCACAGATGTCAAGCTGAGTCTGAACATCTTGCGGGCAGCCATGCAGGGCGAGCGCAAGTTTATCTTTGCTGGCCTCCTTCTAACCAGCCACAGACACCAATTCCATGAGGAGATGATCAGCTATTACCTGACCAGTGCACAGGAGAGGTTTAGTGCTGAGCAGGAGCAGAAAAGGAAAGCTGAGGCCGAAAAGAAACCCCAGACCAACGGGGTGGCCCTTAAGAAGCCTGAACTGGAGAGCGTCTTCCAGAGAGAGTGCTCGGATAGTTCCCCTCCTGAGAGTTGCTCGCCGGTCTTGCATCCCAGCCATATCCCGCAGCTGAGGACACAAGGTAGAAACAGTCCGATCCTCGCTGCTTCTCCTATCCCCATCCCAAGTCCTACCCCATCTTCAGTTCCTACAGCTTCCTCCATGTCTCCCGTTCCCTTCTCCTCCCCCAGTAATGGTGCTAAGAGACCTGGGCCTGTGCCGGTGTCAGCCCACTATAGCCATACCCCACCCATCCAGCGGCACAGCGTTATCCACCTAAGGGACGTGAACACACAGTCATCCAGCTACCAGGATGAGCCCTATAAGCCGACGATAGGGATGCTAAAGACCTGCGCCACCTATCCTCAGCAGAACCGCTCGCTGTCCTCCCAAAGCTACAGCCCGGCCCGCATGTCCGGGGTCCGCACCATCAACACCGGAGATTCCCTACCATACAACATGCCAGGCGAGCACAAGTCCCACACCTATACCAACGGCTTTGATGCAGGCGACATCCAGGACTGTCTGGAGTTTGCAGACGAGGAACCGGCACCCCATGCCTGGTTGGGACACGACAAGGCCAAGGTCCGGAGCGGAACCTGCCCCATGTACTGCTTCCAGCAGAAGCGCTGCAAGAGGGAGAACTGCTCCTTCTATGGGCGCCCTGAGACCGAGAACTACTGCTCCTACTGCTACAGAGAGGAGCTAAAACGCAGGGAAAGAGAGGGCAAAATGCACCGGCCTGGATAGCCCCCGcccgcaaacacacacacacacctatacatatacacacatacacattcaccAACCAGTGTGTGCAAAGCAGGCTCCAATGAAGAACAACAACACCATCACCCTCTGCACTCTGCGAGTAATATGAAAACACTGGCAAAACAGTTTCCTACTCTATTTAAAGAATGGTCTCCTTGCGTTCTTGTTACCTTTCTCTAAATAGCAAAAGGATTCTGGGACTCTTACTTTACGAGAAAAGGAAGTACAACCGAAATCAGTTTACAGCTTTGGCCAGAGATTGTgttgtcatttattttttgtcagtttGCATTTTGTCTGGTTGAATTTGAATCTTTTACTTGTTCTAGAGTAAAAGCTCATGTCTGCGCATTTTGCTCAGTCTGTAAAATAGAATTCCTTGTACTATCTGAAAGAGATGGAAAAGTGTACGTCAGACTCCTCTCAGCTAACCCAAAGCTGAAGGGAAACTCCGTTCAGAGGTCATTTGAATGCAATACTTCACACAATAGCTCTTTGAAATCTCAATATCAAATAACGTCTATCTGCTGTGCAttgcaaataattaaatacGGGAGGGACATGCACTGCTAAGCATGggaatttttttaaaagcaataaGTTTGGTAATGACCGCAACCCCTCCCTCTTTTTTATCTATGCATCCATAATGTCAGCCATAGTATATCGTCCGTTGTGTGGATTTGAGTGTGATTCGATCTTGCCCTGATGTAAGAGGACTTGGGGTGAAACATTTCATTTGTGGCAAAGTGTGCTGAATGGTATCGTGGAATTAATACTGTACTTTTAACATGCTAATCAGTCCTCTGTGTACGTGGGTTTGCATTCCATTGCACCTGTCTTCTGTAGACTGTGTCTGATGCAGTACAGAGCCATTTATTGCTAGCTgcattttttgcaatatatcaCATTCATGCTAGCAAGCGGTGAGCTTATGTAAAATAGACCTACTCGTGACAACTTTACACAGCGCTCTTGCAGTAACAAGAGAATGGAATACAAACCTTTATACACTTGAACTGTAGACAAACAGTGAAAAGCAAAATGGAACCCTGTCTGAGTGTTGTTTGTCATTATTGGTTGCCCATTGGTTACACTGTGGTGTGGTGTGATGTATGTGATAGCTGTTCCTCATCACACATTCTGTAACCCATAAGCACTGCCATAACAGTCTCTCATAGTCAGATCTGCCTAGTTTGCCCTAAGAAAAGGTTTGTGCCAAAAAAGACAGTTCTCCCCTATTTAATATCCTCAGGTATTGTGTTAAATATGTTGGGATTCTGACAAGTCATTTACATTTCTGACCTCACAGCAATGTACATTTGATTATGATTGTTTAGGAAACTATTTTCTGCATCATGAATGACCAAATTTAAACACAATGAATGCACAAAAATGACTGGAGGAATTATTACATTGTAGCATAATGTAGACAACACATACAATACaccacacatttatttattacttttgcaTTTAGAATAGAATGAAAAATTGGTTTTGGTAAATGCATTTGTATTGAAAACTATTATTTGTTTAAGTTCTAATCAATGAATGCATTTGATTTGGCACCTTCAGTTGCATTCTATACAAGAATGTGTGTCCAAGGTTTTGAAAGATGAGAGCAACACATCTGAGTACTTTAGTGTAACGTTTATCAGTTTAGTTTTCTGGCTGTTTTGAATaaaaatgattgattgattataaaatatttgtttttccatttattataggaaaaaaatattttcatcagttttttttattttgtttctttttcatttctgccCCTCACAATCTGAACTTCAGGAAAAAATGCATCTTGCAACAAAAACTTGTTAGATTATGATGTCAGATGTTTGTAACAAGATACAAACATCAGAAATTTGCATTTTCACTGTAATTCAGATTGTGATGGGCATAAAtgaaaaaagtagaaaattatatatattattatacatctCTTCTTTACTATACTGAATAAAGAACAATTTTCTGTTTTCAAATTTAACCCCAAATATTCAGACAATTAAACTGATAAATGTATATTCTTTGCCCTCCTGTAATTTGCCTCCTCCAAAGTTTGGGTGAAAGCAGCACTTCAGATTTGACTAAAtcttatttttgccattttgggCCAAAATCTTATGACTAGTCAGAAAAGCATAATTATATAGGAAACATATGAAAGAAATAGGGGTTAATAGTTTCAGTTTGTCTCATCAAAGTGGGaaaaaagctgtttaaaaaCTTATTGTTAGACATGCAAAATTTGATGCAGCAGCTTTTATCCACGGCCTCACTTTGTGTTTAGCTTTTAGATTTAAGGCATTCGGACAGAGTTTGTTTTCACCTAAATGGGGGATGTGGTCATCCAGATGACAAGGAAGTGAGATATGATTGCTCTCATCTATTTGCaatcaaaattgacaaatttaaatgtaagcCATTAAAAACATGCCTTTTCAACATTCAGGTCTGGACTAATGGCAGCAAAGGTGTTCTGTTTCATTGCTTCTAACAGCAAATATACTCCCTCGCCACTAGATGTGCCGATGTTTTGTAATTCTGGAGCCAAGCATACAATAGGCTATAtcttcaaatgtttgtggacacctcttgTAATGAATTagtaaatgcattcagctactttaagtagGTTCCACACTTTACTGACACTTTGCTGGCACCATATTGGCCAGGCGGGGGCTAGAGGGGTATGAGGCCCATCTACTGTGTTGTTCCTTCCAAAATCTTTAGTATCATTTGAattgcagttaaaaaaaaattggtaataCTCCAAAGACTAGCAGAACAAAAGCAatcaacaaaattaaacaaaaacaggataagCAGGGAATGAGGTGTTGCCATACATTTGTTCATATATTGTATGCATTGTGCTTAACATGGTGGGTCTGTGGCTGATCCCAGTCATGCTTTGATTCCTGTGATTCACTGTGTGTAGCCTGGGCAAAGCAAAGGCCTCTATAAGTGCTCCAGGCCTCCAGCAGGGTCATGCCGGCCGGAGCACTgctcgctgctgctgctgctgctgggtgtGTGTCGTAAGCCCAGATAACCCTTGTGCGGTCTCacgctgagtgtgtgtgcgtgtctctCCTGGCCAAGGATGTCCTCTGCTTCTTGTGTTTTCTTCCCAAGGTTCTACTGCGCCACCCGTCGCGTCTCCTTCctcccttcctcctcctcctcttcctcctttctATGTGACAAGATCATGGACTCACACTGTCTTAGAattgtaaaatatgattttgtaTTCATTTGACAGTTTTACActactttaaattattaatttgcaCATTAGGTACCGACGTAAACAGtaggaggaaaagagaaaagaacaaaacaagattagtttattgttaa

Function

symbol description
otud7a Predicted to enable DNA binding activity; thiol-dependent deubiquitinase; and zinc ion binding activity. Predicted to act upstream of or within proteolysis. Predicted to be located in cytoplasm and nucleus.

NR:

description
PREDICTED: HMG domain-containing protein 3 isoform X1

GO: NA

KEGG:

id description
K11860 OTUD7A_B; OTU domain-containing protein 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007246487.3 True 6657 mRNA 0.46 13 16618151 16738665

Neighbor

gene id symbol gene type direction distance location
LOC103042575 LOC108433637 coding downstream 90064 16489647 ~ 16528087 (-)
acsbg1 NA coding downstream 160397 16447496 ~ 16457754 (-)
cib2 cib2,LOC103027299,LOC107573330,LOC107752320,LOC101476243 coding downstream 203806 16384549 ~ 16414345 (-)
tbc1d2b tbc1d2b,LOC107698183,LOC102789207 coding downstream 267987 16317884 ~ 16350164 (-)
dapk2 dapk2,dapk2b,LOC107752317,LOC107757761,LOC107659496,LOC107573357 coding downstream 304826 16257338 ~ 16313325 (-)
bnip2 bnip2,LOC107703138 coding upstream 76251 16814916 ~ 16829981 (-)
LOC103044821 anxa2,LOC108433632,LOC107739086,LOC107724175,LOC107659511,LOC107550215 coding upstream 219909 16958574 ~ 16965560 (-)
ice2 NA coding upstream 228117 16966782 ~ 16988490 (-)
LOC103045127 rora,roraa,LOC108433630,LOC106561150,LOC106573506,LOC103141220 coding upstream 254246 16992911 ~ 17425461 (-)
LOC103045440 zgc:162595,LOC108433606,LOC108275248 coding upstream 849363 17588028 ~ 17600473 (-)
G74265 NA non-coding downstream 109689 16508004 ~ 16508462 (-)
G74211 NA non-coding downstream 296498 16316945 ~ 16321653 (-)
G74205 NA non-coding downstream 326132 16286228 ~ 16292019 (-)
G74203 NA non-coding downstream 365399 16252492 ~ 16252752 (-)
G74202 LOC108433646 non-coding downstream 395878 16219096 ~ 16222273 (-)
G74295 NA non-coding upstream 4395 16743060 ~ 16747522 (-)
G74306 NA non-coding upstream 31777 16770442 ~ 16786039 (-)
G74368 NA non-coding upstream 58380 16797045 ~ 16801051 (-)
G74407 NA non-coding upstream 516252 17254917 ~ 17255289 (-)
G74447 NA non-coding upstream 1066670 17805335 ~ 17813965 (-)
LOC103041134 rps27l,zgc:136826,LOC107752326,LOC107598918,LOC101156845 other downstream 147828 16467089 ~ 16470323 (-)
LOC103046265 pkp3 other downstream 837473 15758303 ~ 15780678 (-)
LOC103040324 NA other downstream 1203538 15381329 ~ 15414613 (-)
LOC103037068 cpne8,LOC108274474,LOC107679956,LOC107752477,LOC107723993,LOC105026415,LOC106561599,LOC105028206 other downstream 1403867 15123814 ~ 15214284 (-)
hbp1 hbp1,LOC107732286,LOC107701066 other downstream 1820868 14709058 ~ 14797283 (-)
nrg4 NA other upstream 1138361 17877026 ~ 17885395 (-)
G74591 isl2,LOC105022634 other upstream 1244082 17982747 ~ 18029747 (-)
G74791 NA other upstream 2200509 18939174 ~ 18940464 (-)
LOC103034453 LOC108436916,LOC107753633,LOC107659484,LOC107573489,LOC107752304,LOC108181664,LOC107598834 other upstream 2254003 18992668 ~ 19008366 (-)
G74838 wasl,LOC105896696,LOC108275301 other upstream 2332273 19070938 ~ 19072888 (-)

Expression


Co-expression Network