foxb1 (foxb1)


Basic Information

Item Value
gene id foxb1
gene name foxb1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 16895315 ~ 16897931 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007246491.3
GCAAAGAAGTGGCACATTAATGAAGCGCCTCTGCAGGGGTCTTTTCTGCTCATGTCACCCCATAAAAACTATCAGATGGTTAGAGGAAGGACATGGAGGCAGCTACTTAGCTCACCTTAACCGAGcaagaggggaagagagagagaggagctcgAGCCATTCAGCTGCCAGACGAAGAGGAAGCTTGTGTTTCTTGTAAGACTGAAGAGAAGATCAGAGTTGCAGAAcaagaagaacaacaacaagaagtagaagaaacaccaccaccacaagaAGAAGAATCtgggttgttttgtttttgttttgtttcatttttttcaattgcgGACTGCAGCCAAGTTCTGACTTTTCCACTCCTACATAACCAGCGGATGGTCCACCCGTGCaacttctcttctctctcgtctctcaaCTTTGTGTTACTTCATGACCCGTTCGAGAGTCGCTTCTAACTCCTAATTTTTCGGGACTCTGCTCCACTCTCATTCCTCCTCCTtccaaaaaagaagaagaccGCGCTCAGTGTTGAAGCCAACGCGCCTCAGGAATCATCCAGAATGCCTCGCCCGGGCAGGAACACCTACAGCGACCAGAAGCCGCCCTACTCCTACATCTCCCTGACAGCCATGGCCATCCAAAGCTGCCCGGAGAAGATGTTGCCGCTGAGCGAGATCTACAAATTTATCATGGACAGGTTCCCCTACTACCGCGAGAACACGCAGCGCTGGCAGAACTCCCTGCGCCACAACCTCTCGTTTAACGACTGCTTTATCAAGATCCCGCGGCGGCCCGATCAGCCCGGCAAGGGCAGCTTCTGGGCGCTGCACCCCAGCTGCGGCGACATGTTCGAGAACGGAAGCTTCCTGCGGCGCCGTAAGCGTTTCAAGGTGCTCATGGCTGACCCGCTTGCCATGGCGGCGGGCGCCAAGCCGTCCGAGGCGGCGCACtatctgcagcagcagcatgccAAGTTGCGGCTGAGTGCTCTGGCCGCCACCGGGACGCACCTGCCGCCCGTGGCCGGCTACAACTTGGGCGCCGCGTCGCCCGCCTCCACCTTCAAGCACCCGTTCGCCATCGAGAACATCATCGCGCGCGAGTACAAGGTGCCCGGCGGCCTGGCCTTCTCGGCTATGCAGTCCATGTCTGCGGGGTATCCGCTGCACGGGCAGTTGGGCAGTGCGTGGCCGCACGTTTACGGCACCGGAGCGGCGGACACGACAGCGCCCATCTCAATGGCAAGCGACTACGGCGCGTACGGCGTGCCCATCAAGTCGCTGTGCCACGGCGGCCAGACGCTGCCCGCTATCCCCGTGCCAATCAAAGCCACGCCAGCGTCCGTGGCTGGTCTGTCCGCGCTGCCGCACCACCTGCCCGCCTTTCTCTCGAACTCGCCGCAGTCGTTGAGCCCCACGTCGCCACACGCCGCCGCCAGCCAAAGCAGCCCGGGCGCGCCCAGCGACGCACTCACCAGTCCCGCCGCCCTCCAGTCCGTGGCCGTGCACTGACGTGGACactcaaaaaatattaaataataataaacaaaacaagcagTGCGATGGGGAAACGGTGGTGTGGAGGCGACGGCACGAACTAGACACTTTCTCCAAAGTTGGACTGTTTCAATTTTTATGAAATTCCGAGGCAAGATCTGTCCGTGTTGCAATGTTGTTACTtttctgtgtatgtgttttatCCGTTTTTAATGTGTGTTGCTTTAAATAGTGCGCTGTATGAGCACACGGATTGAGAACACATATAGGCCTGGcatattactgtaattttttttttttttttaccagagaaCAAACTAGCCCAAGGTTTTACCTTTAACACTACAGAGATATCGGCCAGTTGGATAATTGTTGCTAAAAAAGTTGGTTTCTAAACTGTCTGTAATCAGTTTTAGATCTGTATACATTTTACTTTCATAAAGTCAAATCTTTTGGGAAATTCCACAGACAATTCAACTCacatttaatatagttttattgcagtttttaGTGTAAAGGCTCCGATCTGGCAGACCTTGCATGCTAAAGTTACTCAACTGTTTTAAGGTCTgatcttacattacattacatgccAGTTAAATTACAGCAGAGAGCGAAGAAGCTCAAAGACGCACTACTTTACAATTGTACACCactgacaataataataataataataataataataataatgataagaaTAATTTTCACACTTCACACCAAACAGACAGGCCTACACTGTACTCTGAGATATCAGACTTGAAAGATACATTTAAAAGGTGAGATAATCGTGAAAGGCgaaataaatatgtgaataattGCAAATAAGTGatataaaattgtgtaaaatgcactttttagtTAGATGTTTTAGATAATCTCTATTTTGCAGGAGATGTTTTGTGAAGCATTTAATTTAAAGCCGTGGTGACCATGTGAATTAAAAATGCTGTACATTTgtactttcttttttgttgaGATATAAAGCATGCCTTTTCCAAACTTTGTGTTGTTTTGCTGCAAGCATGCGTGCTTTAAAACAAGTGTGCAAAAAGTCTGCATTAAATTATAAACTTGGTCATCagaatattttttcattaaaattaaGCAAAACCTCAAACATT

Function

symbol description
foxb1 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in several processes, including mammary gland development; nervous system development; and visual learning. Predicted to act upstream of or within spinal cord development; thalamus development; and urogenital system development. Predicted to be located in nucleus. Predicted to be part of chromatin.

NR:

description
PREDICTED: forkhead box protein B1

GO:

id name namespace
GO:0061374 mammillothalamic axonal tract development biological_process
GO:0061379 inferior colliculus development biological_process
GO:0061381 cell migration in diencephalon biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0001756 somitogenesis biological_process
GO:0021855 hypothalamus cell migration biological_process
GO:0008542 visual learning biological_process
GO:0033504 floor plate development biological_process
GO:0007412 axon target recognition biological_process
GO:0043524 negative regulation of neuron apoptotic process biological_process
GO:0022029 telencephalon cell migration biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09395 FOXB; forkhead box protein B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007246491.3 True 2617 mRNA 0.48 1 16895315 16897931

Neighbor

gene id symbol gene type direction distance location
gcnt3 NA coding upstream 96695 16796943 ~ 16798620 (+)
LOC103024840 LOC108433634,LOC108274563 coding upstream 100343 16748290 ~ 16794972 (+)
LOC103042878 znf467,LOC108274922 coding upstream 303552 16563973 ~ 16591763 (+)
LOC103041748 rab8b,LOC108433638,LOC107598845,LOC107550224,LOC107659505,LOC107752325 coding upstream 407026 16474883 ~ 16488289 (+)
dnaja4 dnaja4,LOC107698158,LOC107550212,LOC107752324,LOC107598844,LOC107659503,LOC107715738,LOC107099226 coding upstream 428458 16461892 ~ 16466857 (+)
LOC103025470 tln2,LOC108433629,LOC107659514,LOC107703225,LOC107739102 coding downstream 786739 17684670 ~ 17806900 (+)
tpm1 tpm1,LOC107712528,LOC107659515,LOC107739081,LOC103141214,LOC103379363,LOC103149890,LOC108237348,LOC103040917,LOC108441842,LOC107589334 coding downstream 947170 17845101 ~ 17866128 (+)
lactb lactb,LOC107712527,LOC107659517,LOC107589333,LOC107557987 coding downstream 970632 17868563 ~ 17876239 (+)
tmem266 tmem266,LOC107557978 coding downstream 989377 17887308 ~ 17961661 (+)
isl2 isl2,isl2a,LOC107589357,LOC107662481,LOC107712508,LOC107688926 coding downstream 1081497 17979428 ~ 17986224 (+)
LOC111193101 NA non-coding upstream 8167 16831109 ~ 16887148 (+)
G74294 NA non-coding upstream 148920 16745859 ~ 16746395 (+)
LOC111193100 NA non-coding upstream 333527 16556002 ~ 16561788 (+)
G74247 NA non-coding upstream 372630 16522267 ~ 16522685 (+)
G74241 LOC108433637,LOC108274564,LOC107698134,LOC107715707 non-coding upstream 395977 16497035 ~ 16499338 (+)
G74339 anxa2,anxa2a,LOC108433632,LOC107739086,LOC107724175,LOC107659511,LOC107550215,LOC107598852 non-coding downstream 59726 16957657 ~ 16964382 (+)
G74335 rora,LOC108433630,LOC106561150,LOC107659510,LOC107598851 non-coding downstream 91097 16989028 ~ 17008539 (+)
G74413 NA non-coding downstream 578826 17476757 ~ 17476980 (+)
G74461 NA non-coding downstream 1063765 17961696 ~ 17964775 (+)
G74471 scaper non-coding downstream 1096663 17994594 ~ 17995133 (+)
G74169 NA other upstream 606986 16286676 ~ 16288329 (+)
svip svip other upstream 1317782 15572302 ~ 15577533 (+)
rpgrip1l rpgrip1l other upstream 1974312 14891534 ~ 14921003 (+)
G73533 NA other upstream 2245764 14648829 ~ 14649551 (+)
LOC103043719 NA other upstream 3997384 12871484 ~ 12897931 (+)
G74649 NA other downstream 1556920 18454851 ~ 18455197 (+)
LOC103029914 scamp5,scamp5a,LOC108436905,LOC103363822,LOC107395508,LOC107703195 other downstream 1572773 18470704 ~ 18479345 (+)
G74832 NA other downstream 2184885 19082816 ~ 19085556 (+)
cadps2 NA other downstream 2242218 19140149 ~ 19322775 (+)
tmem17 tmem17,znf774,LOC107678976,LOC107753710 other downstream 2562027 19459958 ~ 19462187 (+)

Expression


Co-expression Network