LOC103045127 (rora,roraa,LOC108433630,LOC106561150,LOC106573506,LOC103141220)


Basic Information

Item Value
gene id LOC103045127
gene name rora,roraa,LOC108433630,LOC106561150,LOC106573506,LOC103141220
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 16992911 ~ 17425461 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007246493.3
TTGTCTGACTGGAGCTCTCACTAGCGCTGCCAGTGGACAATCAGACCTACACACCCACCTCTGGCTACACTCGCGttttttttgaacatttcttagttctgctctaaatttaCACGGCTAGGCGAAGTCCTCTTAGCTCGACTAAAATCTCGCCGCGACGCTCCGTGATCCACTGGAAgacagaagaggaggagaaggcaGAGAAATCCGAGATACAACATGGAGTCCCCTCCAGATCCAACCAGCGACCCGGGCAACAGCGCCTCAGAGTCGGCTACCCCGGTCAGGGAAACCCCGGTAAACCTGGAGACTCTCCGCAAAGCTGAGCACCACCAAGCCCCCCCGGTCAGGAGACagagctgctccagcaccaatAGAGgTATTTCAGTAACAAAGAAGACACACACTTCTCAAATTGAAATTATTCCCTGCAAGATCTGTGGAGACAAATCATCAGGCATCCATTACGGCGTGATAACATGTGAGGGCTGTAAGGGTTTCTTCAGGAGGAGTCAGCAGAGCAATGCTGCGTACTCGTGCCCGCGTCAGAAGAACTGCCTGATCGACCGCACCAGCCGAAACCGCTGCCAGCACTGCAGGCTGCAGAAGTGTCTGGCCGTGGGCATGTCACGGGACGCGGTGAAGTTCGGTCGCATGTCCAAGAAGCAGCGGGACAGTCTGTATGCAGAGGTGCAGAAGCACCGGCTCCAGCAGCAACAGAGGGACCACCAGCAGCAGCCCGGTGAGGCCGAGCCGCTCACCCCCACCTATGGGCTGTCAGCCAACGGCCTGACCGAGCTGCACGACGAGTTGAGCGGCTACATGGACGGACACACGCCGGACGGCAGCAAGCCCGACTCAGGTGTCAGCAGCTTCTACCTGGACATCCAGCCCTCACCCGACCAGTCCGGCCTGGACATCAACGGCATCAAGCCTGAGCCCATCTGCGACTTCACGCCCGGCTCAGGCTTCTTCCCCTACTGTTCCTTCACCAACGGCGAGACTTCACCCACCGTCTCCATGGCTGAGCTAGAGCATCTGGCCCAGAACATCTCCAAGTCCCACATGGAGACGTGTCAGTATCTGAGAGAGGAGCTGCAGCAGATGACCTGGCAGGCCTTCTTGCAGGAGGAGATGGAGAGCTATCAGAACAAGCCCAGAGAAGTCATGTGGCAGTTGTGCGCCATTAAAATCACAGAGGCCATCCAGTATGTGGTGGAGTTCGCCAAACGCATCGACGGCTTCATGGAGCTCTGTCAGAACGATCAGATCGTGCTGCTCAAAGCAGgctctttggaggtggtgttTGTCAGAATGTGCCGTGCCTTTGACCCCCAGAACAACACAGTCTATTTCGATGGAAAGTATGCTGGTCCTGATGTGTTTAAGTCATTAGGCTGTGACGACTTGATCAGCTCTGTCTTCGAGTTTGGGAAAAACTTGTGTTCTATGCACCTGTCTGAGGACGAGCTCGCCCTGTTCTCGGCGTTCGTGTTGATGTCTGCAGaccGTTCCTGGCTCCAGGAGAAGGTGAAGGTGGAGAAACTGCAGCAGAAGATCCAGCTGGCCCTACAGCACGTCCTGCAGAAGAACCACAGAGAGGATGGCATACTCACAAAGttgATATGCAAAGTGTCGACACTGCGAGCGCTGTGCAGCAGGCATACAGAGAAGCTGACTGCTTTCAAAGCAATATACCCAGACATTGTGCGCACCCACTTCCCCCCATTATACAAGGAGCTGTTTGGATCAGACTTTGAGCAGTCCATGCCTGTGGACGGCTAGCGGCCCCCTTCGTCCTGCCCTCCGGGGGGCAAAAACGCCGTGGGGAATGTCGAGCATGAATCTGAGACACTTTACCAGTGCCCTGCACATACATATATGCccatatgcacacacaaacatacacacacacacatacacaacacacaccgacgcgcacacacacatacacaaacacgtACCAGGACAGCTAACCTGCTGCACACTTTCccgtttttttgttgttgttgttttttcctttgGGAGGGCGTGAGGCAGAGGCGGGTTTGATTTAGAGGGGTAATTTGTGAGGTTTATCCCCTCGTTTTTTGATACAGGTGGGATTGAGGGGGCCCTGGGGAGAGGATGAGAAGATGAAGacactcgttctctctctctctctctctctctcccttttttctctcttactctgtctctctcttttctctctttctggctCAAGCTGAAGCACTCATGCATACGACTCCAGAAGGGTCCCTTGATGATTCCTAATGATCAGCAGAACCTGTTTCCAATGTTTCCAACAacgaaaatatatatactggtTCCAGCAACTCAAGCATCCAGTTTAGAGTGAAATCGATCAAATTAATGACAATAAGCATttcttacttattattattattattattattactacatcTAAGTGGAAAATCTACCCTAAGCCCAAAGAGGGCAAAAACCTGCTGTATGTGCAAGAATTATGACCCAGTATACTGTATGCATGGGCCAAGCTTAGCCTCCTCTCCTCCATTTTTGGTGGGAAGACCTCGCCTCAGAGCGCAATGAAAAGCAGCAATGAAAGAGACTGAAAAAGGAGAGGCAAtggaagagggagagagcggGAGAAACGGGGAGATGGCacgagagagaacgagagtaagaaagagagaggagtgcTGGAAGGAATGTGGAACAGAGCTGTCGGCATTGGGGTGACGTGAAGTGGCACCTATCTAAGGACAAtcgtcaaaaaaaaagaagaagaagaagaaaaaaaaataacctaaGTAGAATTCTGGTAAttctagttttaaaaaaatgcaattactTTTAGCTGTTGAAGACTCCATCCACCATGGTTGCTTAGTGATATCATGTAAGGCCATCTGCTATTAAATCCTTTTCTGGACAGGTGCTTGCAGTTTAACTGAGCACACCGCCACAATGCAAGTCCATTCCACCTGTTTTCTAATGTGCTACAGGGTATATGGTCATAAGTACTTactatacagaaaaaaagtaatgtttaTAGAATCTATTTTAAATAACATGTATGATATTAGTAGCTAGACTATTCTTAATTGTTGAAAAATTGATAAGGCACTTTTATTTGCACCTTTCTTTAATTTAAGACTTGTATATTTACCTAGTGATGTGTTGCATGTGCAAAAAGAAATACAAGTGAAAACCACAGAGTCACAGAGGCTACACGTAGTTGGAAGCTCCTACAacgctgtgtgtgagtgggtggggtttaaGATATATGCTGGGTAAAGGCTGACAGATATCTGTATAGGAAGCTCTGCATTTTAGCACTTACAGAAGTGTAGACACCTAGTCCACACCTGAGTCTACACCTGATCCCAGGTGAGCATGtctgcttttggatattttgagatattttggATAGTTTTACTTCTGCTCTGCAATCACCTCCCATCCACAAAACCTCTAAATCCTCTAAAAGGGAGcttctgtttaaaaatattttttaaaaaatgactcCCACCTGATCTGACACTACTGTGCTTAGCCGTTaactgttaataaaataaaacaaacagtgctaaatacaatttttttggtctcaggtttagtatatatataaacgGTTGTAAAGCACATGGTTTAGAGTTCCAAATCTACTAGCACAAGTGCAATAGTTCCATCTAGTGGTGAGAAGATCACAGTATGCCTCAGTATCTTTAAACTGGGTTGCTGCACAAATcaaaatttaaatacaaattcaaGGCTTGGTGTTAAATATCAAGATCtctacaaagaaaataataataacgataATAATCTAAAAAGCACAATttcaaacaaaactaaaaagaaaatctgtaatatatgtatgtatcaGCAGGGCATTTTTGATTggtaaaatctaatttatttaactatcaaaacattttaaatattttcagatGCCTGCCTTAACATAACAGATTCTGCATAAGAGGTTCTGCAGGAACCATCTAAGAGAATTTGAAAGTGTGTAAACATTACGAATGGCACTGAATGCTCATTTTGACACAGTCtagctttttttctatttctgcgCTGTGTTGTTTTGTGGATGGGTGTGTGTACAGGGTTTGTGCTTGTAAATGTGGAGCTCTTTAAAACAGCCTCTCTGTTAAGGCCTTTGCCCAGCAGCTGTAGCAATAGCTAGGAGAcagttaaagaataaaaaagagagagagaatgaaatatTCAAAGCCTTGTCTGGTAGTAAAAGTTCTATTTTTGTAATATGTACAGTGCATAAGCTGATGAAAGAGGgagtgggagagaaagaaagtgagattATAGAGCACTTATCCCTGCAATAATTagaattgtgtgtgttttttatgtttttgttggaAACAAGGCAAAGTTAGtattagtgttgtttttttctgaataccTATTCGTTGTGTGTTGAGTGAATCTTGATAAACGTGCCATAGAGGTTTCTCCTGCACCAGATGAATccagaaaaaaatgtgttccAGTAACATTCCAGTTAAACTATGGTGTGACTATTATAATGACCACATACAGTATGATCCAGAAATACCACTTTGATAACAAACGTTTAACAAACAATTTTACCGAAcatcaaacatttttaatctGGTGACACCAAATCAaaatttaaatctaattttGTTTCCTCATCTCTTCATAATGATCTGTGTTCAAGTCCTATTTTCCTCAGGGAAGAGTTGTCCTTATTCTAACTCTGACACAGTTGTCATTCATTCATGAAAGATGATGAAAGAAGAAGCTTCACATTTTTTGTGATTTCATTCAAAACATGATCATTAAGATTTTGGACCCAGTTTGACATTACATTTTGATTGATAAATTGATAATTTCCTTTATAATTATCTGTATCTATATTTAAGTGTTAACCCTACAGCCTGTCCCAGAGCCCAGAGTTCACACTTGCAGTTAtaggttttgctgttttttcttgttatacCTGAAACAGCATGTTGGAACATCACTAGTGGAACTAGTGGTAGACATACTCTAATTCGTaattgttacaaaaaaaaagaataattaatgTGAATTGCAGGTTTATACAGGAAGCTTATTCAAACATGAAAGATCATCAACAGAATATTCTAGAATGAATATTCAAAAAAGAAATATCATTGATTTATGGACAGAAAAGGTCTACACCACACAGTGTGAACCTTGGGAAACTTAGGACAGACCACTGGCTGTATTACCAGGCTGATTTACCTGGGTTTATTACCATGATCTCATATACTTATAGATTCTGAGAGCATTTCAGTAGCCATGTTTTTCAGTGCAATGTATTTGATTGGTGTTGCTGACCAGATGATTAAGGAAAGTTCTAACTGCATATGAACATTTGTCAAACTGTGAATGACAATCCAATTCAACCTTTTCTTCAATCCTTTAATATTTTCAATTGGCAGTGTATGGACTTCAACATGAATGCTCAGGGAGAACATTTTATTGAAATTCTGTAAAGGATTATTGgctattgtttgttttatttcagttgTTATACTTGTGTCTAGGATTGTTCATCCCACAAAcctaaaaaacaaatagaaaaatatcAGTAGTTCACTCACTTTCAGCTGTgttaatgtttcattttaaatcataaacatatactaataatattaattacagGCCATTCGCATTACTAATACCATCTAATCCCACAGAACACAATACAGTGTCACACTTTTGGTCcaatttgtatttttctggatGGGGATTGTTGTAATTGTCACTCATATTGCATAAATCTATGTGCCAAATACCTCTTCTACATTTTGCTCCACTAGCAGATTCTGCCCATGAGCCAGGAATTTGTAGTGCGTTACTAATACGGGTTTCTACAGGGTAGCCACTGCTGTGGAGTTCCCTCTGAACAAGCTTTTAATACACAGAAGACTGTTGTCGTTCTTTTTCAGTCTACTTTATCCATATTGATATGTCCTAAAGTCAGTTTCAGCACCCAGTTGCACCATAAGACTGAAGTGTAATGAAGTTATGTTCTACCGCAGCAGAAATCATTTTGTTGGTCTATTAGGTATTAAAAGCAATACAGGCTGTAAAGTAGAACTTTGgacaaatttattttttcaatcgAAGCAAAGGTACTAAATCATCATCTCTGGATTTGTGGTATTTACATGTCGATGTACAGATGCTTATTCTTCTTGTTAGCGAAAGATCCTGCGATCTGTTCTTTGTGTTCTTTGTTCATAGTATATGTATCGTAGTTTGTAGAACAGTATATCTAATCTGTGGTTTCTACCCTCTGtgttaattgtttaatttcttTTGTAAAAAGCAATACGATGCATCTGaacttgtgtgtgtgcgcacgtgtGAGAGAGTATGTTTGATTAAGTCAAACCCCAGACAAGGCTTTAATACATTAGATAAGGAGCAGCAGGGTCAGCTGGTGAAGTATATGGTATATGGATATCTTAGTTTTCCCAGGTTTAATTTACACACTTTTAGTAGCACTGAGCTCGATCCCATCAATGAGGCTGCACAAGCATGAGGCACCATGCACCCCACTGTTAATTCTGTTTATTCATGACTATAGATTATGCAAACCTGACTTTCAAAGGGCCTTTTTTTCAGTCACCAATAGCACAAGTTGAGTTTACAGCTATATCTTCATCTAGGAAACTCGTAGTCAAACTCTTTACTGCTTAGCAAAGGCACTGAATTTTTTCCAAATGTCCTGAATAATGGAAAGGAATTAATGTGTGACATCATGCTTGTcagactatttttatttgaaggtgATACTAAGTGTTACTAAGATGTTGATTGATCTTAatttactgatcattttcattGCATTGTTGAAATgtgattgttgttttttttctgttttgttttgttagtttcttttttaccccccctccccaaaaaaaGCACAGCTGATACAGTTATTAAAAGATATGTTTTAGAATatagaagaaaaagacaaaaaacaaacaaacaaaatttttTAGCCATAATCGAATGTCAAGCAAtaatatatatggtatattatTATTCTTCATCTTTGTGCATAGGCTTTTCACATTTGCATGTAAATACACCTtttatttatcacatttttccccattttattttctctttgtctctctatttttttctggttattatttttgttgtgtatATTTGACTGGTTCTGTTCCCAGGTGGAGAACTAAGAACTTCATATGGCCTGTAAACTGTACAGCTtaatttcactttctctctccctctctcaccttttttctgcttttaattcacgatatttaatgttattattgatCACATGTATAAAGGTAACTTTGTAACTTCTGTCTGTATAGGTAAGAAGAAAATACTGCTATTAAGACCTACTCAGTgcaaatatttatctgtttattgaGAACATCATGCTGTACAGTATCTCTGTTTTTAGTATACTTCTCTCTTTTAGAGTTAGTTTGATAGAGGTAGGGTGTGCTGACattaattttgtgtttaaactgaTGTGTGGTGCTAGGTAAGTTACTTTTGTGAACAAAACTTCTTGATTCCTAGACTAGGCCACTCGATTAGTCCATTCATTTCACTATTGAGTATTGATGCATTATTGATATTAGGACTTGATAAATAATAAGGATAATGATAAAGATTAATTATTATAGTGgtaaaaattacattataaattacCCAGCAAGTACCTGTATCAGTGTGCTAGTCTTGGGACACGGCTCTTGTTTCCTTCTCACTTTAAGAATAGAAGTAAAAGCAGTATCATTGAATTAA
>XM_022672210.1
TCACGTCACAGTCACatggagtgtggtgtggtggcGCGAGGGAGCCGGAGCGGCAGAGCTGTGCTGGCCAGCTGCTGCTCGAACAGCAGGGGGAGGCTTTCGCTCGCGCCGCGCCTGCTGCTCGCCTATGGACCGCCGAGCTTAATGATGTATTTTGTGATTTCAGCGATGAAAGCTCAAATTGAAATTATTCCCTGCAAGATCTGTGGAGACAAATCATCAGGCATCCATTACGGCGTGATAACATGTGAGGGCTGTAAGGGTTTCTTCAGGAGGAGTCAGCAGAGCAATGCTGCGTACTCGTGCCCGCGTCAGAAGAACTGCCTGATCGACCGCACCAGCCGAAACCGCTGCCAGCACTGCAGGCTGCAGAAGTGTCTGGCCGTGGGCATGTCACGGGACGCGGTGAAGTTCGGTCGCATGTCCAAGAAGCAGCGGGACAGTCTGTATGCAGAGGTGCAGAAGCACCGGCTCCAGCAGCAACAGAGGGACCACCAGCAGCAGCCCGGTGAGGCCGAGCCGCTCACCCCCACCTATGGGCTGTCAGCCAACGGCCTGACCGAGCTGCACGACGAGTTGAGCGGCTACATGGACGGACACACGCCGGACGGCAGCAAGCCCGACTCAGGTGTCAGCAGCTTCTACCTGGACATCCAGCCCTCACCCGACCAGTCCGGCCTGGACATCAACGGCATCAAGCCTGAGCCCATCTGCGACTTCACGCCCGGCTCAGGCTTCTTCCCCTACTGTTCCTTCACCAACGGCGAGACTTCACCCACCGTCTCCATGGCTGAGCTAGAGCATCTGGCCCAGAACATCTCCAAGTCCCACATGGAGACGTGTCAGTATCTGAGAGAGGAGCTGCAGCAGATGACCTGGCAGGCCTTCTTGCAGGAGGAGATGGAGAGCTATCAGAACAAGCCCAGAGAAGTCATGTGGCAGTTGTGCGCCATTAAAATCACAGAGGCCATCCAGTATGTGGTGGAGTTCGCCAAACGCATCGACGGCTTCATGGAGCTCTGTCAGAACGATCAGATCGTGCTGCTCAAAGCAGgctctttggaggtggtgttTGTCAGAATGTGCCGTGCCTTTGACCCCCAGAACAACACAGTCTATTTCGATGGAAAGTATGCTGGTCCTGATGTGTTTAAGTCATTAGGCTGTGACGACTTGATCAGCTCTGTCTTCGAGTTTGGGAAAAACTTGTGTTCTATGCACCTGTCTGAGGACGAGCTCGCCCTGTTCTCGGCGTTCGTGTTGATGTCTGCAGaccGTTCCTGGCTCCAGGAGAAGGTGAAGGTGGAGAAACTGCAGCAGAAGATCCAGCTGGCCCTACAGCACGTCCTGCAGAAGAACCACAGAGAGGATGGCATACTCACAAAGttgATATGCAAAGTGTCGACACTGCGAGCGCTGTGCAGCAGGCATACAGAGAAGCTGACTGCTTTCAAAGCAATATACCCAGACATTGTGCGCACCCACTTCCCCCCATTATACAAGGAGCTGTTTGGATCAGACTTTGAGCAGTCCATGCCTGTGGACGGCTAGCGGCCCCCTTCGTCCTGCCCTCCGGGGGGCAAAAACGCCGTGGGGAATGTCGAGCATGAATCTGAGACACTTTACCAGTGCCCTGCACATACATATATGCccatatgcacacacaaacatacacacacacacatacacaacacacaccgacgcgcacacacacatacacaaacacgtACCAGGACAGCTAACCTGCTGCACACTTTCccgtttttttgttgttgttgttttttcctttgGGAGGGCGTGAGGCAGAGGCGGGTTTGATTTAGAGGGGTAATTTGTGAGGTTTATCCCCTCGTTTTTTGATACAGGTGGGATTGAGGGGGCCCTGGGGAGAGGATGAGAAGATGAAGacactcgttctctctctctctctctctctctcccttttttctctcttactctgtctctctcttttctctctttctggctCAAGCTGAAGCACTCATGCATACGACTCCAGAAGGGTCCCTTGATGATTCCTAATGATCAGCAGAACCTGTTTCCAATGTTTCCAACAacgaaaatatatatactggtTCCAGCAACTCAAGCATCCAGTTTAGAGTGAAATCGATCAAATTAATGACAATAAGCATttcttacttattattattattattattattactacatcTAAGTGGAAAATCTACCCTAAGCCCAAAGAGGGCAAAAACCTGCTGTATGTGCAAGAATTATGACCCAGTATACTGTATGCATGGGCCAAGCTTAGCCTCCTCTCCTCCATTTTTGGTGGGAAGACCTCGCCTCAGAGCGCAATGAAAAGCAGCAATGAAAGAGACTGAAAAAGGAGAGGCAAtggaagagggagagagcggGAGAAACGGGGAGATGGCacgagagagaacgagagtaagaaagagagaggagtgcTGGAAGGAATGTGGAACAGAGCTGTCGGCATTGGGGTGACGTGAAGTGGCACCTATCTAAGGACAAtcgtcaaaaaaaaagaagaagaagaagaaaaaaaaataacctaaGTAGAATTCTGGTAAttctagttttaaaaaaatgcaattactTTTAGCTGTTGAAGACTCCATCCACCATGGTTGCTTAGTGATATCATGTAAGGCCATCTGCTATTAAATCCTTTTCTGGACAGGTGCTTGCAGTTTAACTGAGCACACCGCCACAATGCAAGTCCATTCCACCTGTTTTCTAATGTGCTACAGGGTATATGGTCATAAGTACTTactatacagaaaaaaagtaatgtttaTAGAATCTATTTTAAATAACATGTATGATATTAGTAGCTAGACTATTCTTAATTGTTGAAAAATTGATAAGGCACTTTTATTTGCACCTTTCTTTAATTTAAGACTTGTATATTTACCTAGTGATGTGTTGCATGTGCAAAAAGAAATACAAGTGAAAACCACAGAGTCACAGAGGCTACACGTAGTTGGAAGCTCCTACAacgctgtgtgtgagtgggtggggtttaaGATATATGCTGGGTAAAGGCTGACAGATATCTGTATAGGAAGCTCTGCATTTTAGCACTTACAGAAGTGTAGACACCTAGTCCACACCTGAGTCTACACCTGATCCCAGGTGAGCATGtctgcttttggatattttgagatattttggATAGTTTTACTTCTGCTCTGCAATCACCTCCCATCCACAAAACCTCTAAATCCTCTAAAAGGGAGcttctgtttaaaaatattttttaaaaaatgactcCCACCTGATCTGACACTACTGTGCTTAGCCGTTaactgttaataaaataaaacaaacagtgctaaatacaatttttttggtctcaggtttagtatatatataaacgGTTGTAAAGCACATGGTTTAGAGTTCCAAATCTACTAGCACAAGTGCAATAGTTCCATCTAGTGGTGAGAAGATCACAGTATGCCTCAGTATCTTTAAACTGGGTTGCTGCACAAATcaaaatttaaatacaaattcaaGGCTTGGTGTTAAATATCAAGATCtctacaaagaaaataataataacgataATAATCTAAAAAGCACAATttcaaacaaaactaaaaagaaaatctgtaatatatgtatgtatcaGCAGGGCATTTTTGATTggtaaaatctaatttatttaactatcaaaacattttaaatattttcagatGCCTGCCTTAACATAACAGATTCTGCATAAGAGGTTCTGCAGGAACCATCTAAGAGAATTTGAAAGTGTGTAAACATTACGAATGGCACTGAATGCTCATTTTGACACAGTCtagctttttttctatttctgcgCTGTGTTGTTTTGTGGATGGGTGTGTGTACAGGGTTTGTGCTTGTAAATGTGGAGCTCTTTAAAACAGCCTCTCTGTTAAGGCCTTTGCCCAGCAGCTGTAGCAATAGCTAGGAGAcagttaaagaataaaaaagagagagagaatgaaatatTCAAAGCCTTGTCTGGTAGTAAAAGTTCTATTTTTGTAATATGTACAGTGCATAAGCTGATGAAAGAGGgagtgggagagaaagaaagtgagattATAGAGCACTTATCCCTGCAATAATTagaattgtgtgtgttttttatgtttttgttggaAACAAGGCAAAGTTAGtattagtgttgtttttttctgaataccTATTCGTTGTGTGTTGAGTGAATCTTGATAAACGTGCCATAGAGGTTTCTCCTGCACCAGATGAATccagaaaaaaatgtgttccAGTAACATTCCAGTTAAACTATGGTGTGACTATTATAATGACCACATACAGTATGATCCAGAAATACCACTTTGATAACAAACGTTTAACAAACAATTTTACCGAAcatcaaacatttttaatctGGTGACACCAAATCAaaatttaaatctaattttGTTTCCTCATCTCTTCATAATGATCTGTGTTCAAGTCCTATTTTCCTCAGGGAAGAGTTGTCCTTATTCTAACTCTGACACAGTTGTCATTCATTCATGAAAGATGATGAAAGAAGAAGCTTCACATTTTTTGTGATTTCATTCAAAACATGATCATTAAGATTTTGGACCCAGTTTGACATTACATTTTGATTGATAAATTGATAATTTCCTTTATAATTATCTGTATCTATATTTAAGTGTTAACCCTACAGCCTGTCCCAGAGCCCAGAGTTCACACTTGCAGTTAtaggttttgctgttttttcttgttatacCTGAAACAGCATGTTGGAACATCACTAGTGGAACTAGTGGTAGACATACTCTAATTCGTaattgttacaaaaaaaaagaataattaatgTGAATTGCAGGTTTATACAGGAAGCTTATTCAAACATGAAAGATCATCAACAGAATATTCTAGAATGAATATTCAAAAAAGAAATATCATTGATTTATGGACAGAAAAGGTCTACACCACACAGTGTGAACCTTGGGAAACTTAGGACAGACCACTGGCTGTATTACCAGGCTGATTTACCTGGGTTTATTACCATGATCTCATATACTTATAGATTCTGAGAGCATTTCAGTAGCCATGTTTTTCAGTGCAATGTATTTGATTGGTGTTGCTGACCAGATGATTAAGGAAAGTTCTAACTGCATATGAACATTTGTCAAACTGTGAATGACAATCCAATTCAACCTTTTCTTCAATCCTTTAATATTTTCAATTGGCAGTGTATGGACTTCAACATGAATGCTCAGGGAGAACATTTTATTGAAATTCTGTAAAGGATTATTGgctattgtttgttttatttcagttgTTATACTTGTGTCTAGGATTGTTCATCCCACAAAcctaaaaaacaaatagaaaaatatcAGTAGTTCACTCACTTTCAGCTGTgttaatgtttcattttaaatcataaacatatactaataatattaattacagGCCATTCGCATTACTAATACCATCTAATCCCACAGAACACAATACAGTGTCACACTTTTGGTCcaatttgtatttttctggatGGGGATTGTTGTAATTGTCACTCATATTGCATAAATCTATGTGCCAAATACCTCTTCTACATTTTGCTCCACTAGCAGATTCTGCCCATGAGCCAGGAATTTGTAGTGCGTTACTAATACGGGTTTCTACAGGGTAGCCACTGCTGTGGAGTTCCCTCTGAACAAGCTTTTAATACACAGAAGACTGTTGTCGTTCTTTTTCAGTCTACTTTATCCATATTGATATGTCCTAAAGTCAGTTTCAGCACCCAGTTGCACCATAAGACTGAAGTGTAATGAAGTTATGTTCTACCGCAGCAGAAATCATTTTGTTGGTCTATTAGGTATTAAAAGCAATACAGGCTGTAAAGTAGAACTTTGgacaaatttattttttcaatcgAAGCAAAGGTACTAAATCATCATCTCTGGATTTGTGGTATTTACATGTCGATGTACAGATGCTTATTCTTCTTGTTAGCGAAAGATCCTGCGATCTGTTCTTTGTGTTCTTTGTTCATAGTATATGTATCGTAGTTTGTAGAACAGTATATCTAATCTGTGGTTTCTACCCTCTGtgttaattgtttaatttcttTTGTAAAAAGCAATACGATGCATCTGaacttgtgtgtgtgcgcacgtgtGAGAGAGTATGTTTGATTAAGTCAAACCCCAGACAAGGCTTTAATACATTAGATAAGGAGCAGCAGGGTCAGCTGGTGAAGTATATGGTATATGGATATCTTAGTTTTCCCAGGTTTAATTTACACACTTTTAGTAGCACTGAGCTCGATCCCATCAATGAGGCTGCACAAGCATGAGGCACCATGCACCCCACTGTTAATTCTGTTTATTCATGACTATAGATTATGCAAACCTGACTTTCAAAGGGCCTTTTTTTCAGTCACCAATAGCACAAGTTGAGTTTACAGCTATATCTTCATCTAGGAAACTCGTAGTCAAACTCTTTACTGCTTAGCAAAGGCACTGAATTTTTTCCAAATGTCCTGAATAATGGAAAGGAATTAATGTGTGACATCATGCTTGTcagactatttttatttgaaggtgATACTAAGTGTTACTAAGATGTTGATTGATCTTAatttactgatcattttcattGCATTGTTGAAATgtgattgttgttttttttctgttttgttttgttagtttcttttttaccccccctccccaaaaaaaGCACAGCTGATACAGTTATTAAAAGATATGTTTTAGAATatagaagaaaaagacaaaaaacaaacaaacaaaatttttTAGCCATAATCGAATGTCAAGCAAtaatatatatggtatattatTATTCTTCATCTTTGTGCATAGGCTTTTCACATTTGCATGTAAATACACCTtttatttatcacatttttccccattttattttctctttgtctctctatttttttctggttattatttttgttgtgtatATTTGACTGGTTCTGTTCCCAGGTGGAGAACTAAGAACTTCATATGGCCTGTAAACTGTACAGCTtaatttcactttctctctccctctctcaccttttttctgcttttaattcacgatatttaatgttattattgatCACATGTATAAAGGTAACTTTGTAACTTCTGTCTGTATAGGTAAGAAGAAAATACTGCTATTAAGACCTACTCAGTgcaaatatttatctgtttattgaGAACATCATGCTGTACAGTATCTCTGTTTTTAGTATACTTCTCTCTTTTAGAGTTAGTTTGATAGAGGTAGGGTGTGCTGACattaattttgtgtttaaactgaTGTGTGGTGCTAGGTAAGTTACTTTTGTGAACAAAACTTCTTGATTCCTAGACTAGGCCACTCGATTAGTCCATTCATTTCACTATTGAGTATTGATGCATTATTGATATTAGGACTTGATAAATAATAAGGATAATGATAAAGATTAATTATTATAGTGgtaaaaattacattataaattacCCAGCAAGTACCTGTATCAGTGTGCTAGTCTTGGGACACGGCTCTTGTTTCCTTCTCACTTTAAGAATAGAAGTAAAAGCAGTATCATTGAATTAA

Function

symbol description
roraa Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Acts upstream of or within cerebellum morphogenesis and positive regulation of gene expression. Predicted to be active in nucleus. Is expressed in brain and eye. Orthologous to human RORA (RAR related orphan receptor A).
rora Enables several functions, including ligand-activated transcription factor activity; oxysterol binding activity; and transcription coregulator binding activity. Involved in several processes, including negative regulation of I-kappaB kinase/NF-kappaB signaling; positive regulation of macromolecule metabolic process; and triglyceride homeostasis. Acts upstream of or within positive regulation of transcription by RNA polymerase II. Located in nucleus.

NR:

description
nuclear receptor ROR-alpha isoform X1

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08532 NR1F1, RORA; RAR-related orphan receptor alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007246493.3 True 7812 mRNA 0.40 11 16992911 17425461
XM_022672210.1 False 7578 mRNA 0.40 10 16992911 17087007

Neighbor

gene id symbol gene type direction distance location
ice2 NA coding downstream 4421 16966782 ~ 16988490 (-)
LOC103044821 anxa2,LOC108433632,LOC107739086,LOC107724175,LOC107659511,LOC107550215 coding downstream 27351 16958574 ~ 16965560 (-)
bnip2 bnip2,LOC107703138 coding downstream 162930 16814916 ~ 16829981 (-)
otud7a otud7a,si:dkey-37f18.2,LOC107715690,LOC107752330,LOC107659507,LOC107550219,LOC107698115,LOC107598848,LOC108275340 coding downstream 254246 16618151 ~ 16738665 (-)
LOC103042575 LOC108433637 coding downstream 464824 16489647 ~ 16528087 (-)
LOC103045440 zgc:162595,LOC108433606,LOC108275248 coding upstream 162567 17588028 ~ 17600473 (-)
etfa etfa,LOC107712526,LOC107557988 coding upstream 536234 17961695 ~ 17975485 (-)
scaper scaper,LOC107712524,LOC107662441 coding upstream 565026 17990487 ~ 18110831 (-)
LOC103024839 ctdspl2a,LOC108275364,LOC107712523,LOC107688927,LOC107589331,LOC107557990,LOC107662443 coding upstream 690984 18116445 ~ 18123698 (-)
sqor sqrdl,LOC107662477,LOC107688928,LOC107589329,LOC105892492,LOC103363827 coding upstream 700326 18125787 ~ 18141692 (-)
G74368 NA non-coding downstream 191860 16797045 ~ 16801051 (-)
G74306 NA non-coding downstream 206872 16770442 ~ 16786039 (-)
G74295 NA non-coding downstream 245389 16743060 ~ 16747522 (-)
G74286 NA non-coding downstream 302554 16659503 ~ 16690357 (-)
G74285 NA non-coding downstream 351255 16640842 ~ 16641656 (-)
G74447 NA non-coding upstream 379874 17805335 ~ 17813965 (-)
G74556 tpm1,LOC108441842 non-coding upstream 419665 17845126 ~ 17866138 (-)
G74599 slc27a2,LOC108414297 non-coding upstream 792828 18218289 ~ 18227676 (-)
G74640 NA non-coding upstream 925170 18350631 ~ 18350936 (-)
G74704 lamb1,lamb1a,LOC107662456,LOC107739090,LOC107595246 non-coding upstream 1176516 18601977 ~ 18607745 (-)
LOC103041134 rps27l,zgc:136826,LOC107752326,LOC107598918,LOC101156845 other downstream 522588 16467089 ~ 16470323 (-)
LOC103046265 pkp3 other downstream 1212233 15758303 ~ 15780678 (-)
LOC103040324 NA other downstream 1578298 15381329 ~ 15414613 (-)
LOC103037068 cpne8,LOC108274474,LOC107679956,LOC107752477,LOC107723993,LOC105026415,LOC106561599,LOC105028206 other downstream 1778627 15123814 ~ 15214284 (-)
hbp1 hbp1,LOC107732286,LOC107701066 other downstream 2195628 14709058 ~ 14797283 (-)
nrg4 NA other upstream 451565 17877026 ~ 17885395 (-)
G74591 isl2,LOC105022634 other upstream 557286 17982747 ~ 18029747 (-)
G74791 NA other upstream 1513713 18939174 ~ 18940464 (-)
LOC103034453 LOC108436916,LOC107753633,LOC107659484,LOC107573489,LOC107752304,LOC108181664,LOC107598834 other upstream 1567207 18992668 ~ 19008366 (-)
G74838 wasl,LOC105896696,LOC108275301 other upstream 1645477 19070938 ~ 19072888 (-)

Expression


Co-expression Network