etfa (etfa,LOC107712526,LOC107557988)


Basic Information

Item Value
gene id etfa
gene name etfa,LOC107712526,LOC107557988
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 17961695 ~ 17975485 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007246514.3
AGAGTTAACTCTCGCGATATCGCGGCCCTGTGAGCTCTGCGGTTCAGTCCTGCAGTAGAGtggaggagctgctgctgctgtaatcATGCTCAAAGCTGTGAACAAGACAAACCTCAGGACTCTGtcaGGCCTCATCCAACGGTTCCAGAGTACCTTGGTTGTGGCAGAGCACAATAATGGCACACTAACACCAATCACTCTCAATGCTATCACAGCAGCCAGCAAACTCGGCAGTGATGTGTCCTGTCTAGTTGCTGGAACAGAATGCACTAAGGTAGCAGAGGAGCTTTCAAAAGTTAAAGGACTAAAAAAGATACTGGTCGCCCAACACGATGCCTACAAAGGAGCATTACCAGAGGATTTGACACCCCTCATTTTGGCAACACAGAAGCAATTCAATTTCACACACATCTGTGCTGGAGCATCTGCTTTTGGAAAGAATCTTCTGCCAAGAGTTGCAGCCAAGCTAGATGTTGCTCCTATTTCAGACATCATTGAGATCAAATCCGCTGACACGTTTGTACGGACTATTTATGCAGGGAATGCCCTTAGCACTGTCAAGTGCAATGAGAAGATCAAGGTCTTCACAGTGAGAGGGACATCTTTTGAAGCAGCTGCTAAAGAGGGTGGAAGTGCTGCTTCAGAACAAGTCTCTCCGGCTCCTCCTGCTGGGATTTCTGAGTGGTTAGAGCAGAGTCTGACCAAGAGTGACCGGCCTGAGCTTACCAGTGCTAAGGTTGTTGTGTCTGGAGGCAGAGGTCTAAAGAGTGGTGAAAACTTCAAGCTGCTTTATGACCTTGCTGACAAGTTAAATGCTGCTGTTGGTGCTTCCAGAGCTGCCGTGGATGCTGGCTATGTACCCAATGACCTGCAGGTTGGGCAAACAGGAAAGATTGTGGCTCCTGAACTGTATATTGCCGTTGGAATTTCTGGAGCTATTCAACATCTTGCTGGAATGAAGGACAGTAAGacTATTGTGGCTATCAACAAGGATCCTGAGGCTCCCATCTTCCAAGTTGCAGATTATGGCTTGGTGGCTGACTTGTTCAAGGCTGTTCCTGAGATGACGGAGGCTCTGAAGAAGTGATGTTCATCACTCCCCTTCTAGCCTGGGCATTGTTGGGTGGGAGGCATGTCTGTAACTGTGCTGGGATTGCTACTATAGGCCTGTTTGCCTTAATGTCCTGTAGAGATATGGAGAAGAGTTATCACAGAACctttacaaaatacattttcatcaTGCCTTTCTGTTTTTGATCAAATGTTTGGTCTGTTTATCCTGTTGCTTTCTATACTTGGTAACATTGTTGTAGTCCAGGTATTGTACTGCCAGCTCAATTCTACCAGTAGCATAATGTTTTTGGGTAATGACTTGATTTATTAAGTCTGATTGTACCATTTTAAATATGTTCTAACTGGCTGCTcagaacataaaataaaattaaccaTCATCTGTTA

Function

symbol description
etfa Predicted to enable electron transfer activity and flavin adenine dinucleotide binding activity. Acts upstream of or within animal organ morphogenesis; mitochondrion morphogenesis; and regulation of fatty acid beta-oxidation. Predicted to be located in mitochondrial matrix. Is expressed in several structures, including alar plate midbrain region; digestive system; musculature system; nervous system; and yolk syncytial layer. Used to study multiple acyl-CoA dehydrogenase deficiency. Human ortholog(s) of this gene implicated in multiple acyl-CoA dehydrogenase deficiency. Orthologous to human ETFA (electron transfer flavoprotein subunit alpha).

NR:

description
electron transfer flavoprotein subunit alpha, mitochondrial-like

GO:

id name namespace
GO:0009887 animal organ morphogenesis biological_process
GO:0070584 mitochondrion morphogenesis biological_process
GO:0031998 regulation of fatty acid beta-oxidation biological_process
GO:0009055 electron transfer activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function

KEGG:

id description
K03522 fixB, etfA; electron transfer flavoprotein alpha subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007246514.3 True 1458 mRNA 0.45 12 17961695 17975485

Neighbor

gene id symbol gene type direction distance location
LOC103045440 zgc:162595,LOC108433606,LOC108275248 coding downstream 361222 17588028 ~ 17600473 (-)
LOC103045127 rora,roraa,LOC108433630,LOC106561150,LOC106573506,LOC103141220 coding downstream 536234 16992911 ~ 17425461 (-)
ice2 NA coding downstream 973205 16966782 ~ 16988490 (-)
LOC103044821 anxa2,LOC108433632,LOC107739086,LOC107724175,LOC107659511,LOC107550215 coding downstream 996135 16958574 ~ 16965560 (-)
bnip2 bnip2,LOC107703138 coding downstream 1131714 16814916 ~ 16829981 (-)
scaper scaper,LOC107712524,LOC107662441 coding upstream 15002 17990487 ~ 18110831 (-)
LOC103024839 ctdspl2a,LOC108275364,LOC107712523,LOC107688927,LOC107589331,LOC107557990,LOC107662443 coding upstream 140960 18116445 ~ 18123698 (-)
sqor sqrdl,LOC107662477,LOC107688928,LOC107589329,LOC105892492,LOC103363827 coding upstream 150302 18125787 ~ 18141692 (-)
galk2 galk2,LOC107688931,LOC107557993,LOC107589326 coding upstream 202197 18177682 ~ 18188399 (-)
LOC103025779 tjp1b,LOC108414298,LOC107589322 coding upstream 252867 18228352 ~ 18375654 (-)
G74556 tpm1,LOC108441842 non-coding downstream 95557 17845126 ~ 17866138 (-)
G74447 NA non-coding downstream 147730 17805335 ~ 17813965 (-)
G74407 NA non-coding downstream 706406 17254917 ~ 17255289 (-)
G74368 NA non-coding downstream 1160644 16797045 ~ 16801051 (-)
G74306 NA non-coding downstream 1175656 16770442 ~ 16786039 (-)
G74599 slc27a2,LOC108414297 non-coding upstream 242804 18218289 ~ 18227676 (-)
G74640 NA non-coding upstream 375146 18350631 ~ 18350936 (-)
G74704 lamb1,lamb1a,LOC107662456,LOC107739090,LOC107595246 non-coding upstream 626492 18601977 ~ 18607745 (-)
G74711 lamb1 non-coding upstream 637891 18613376 ~ 18614926 (-)
G74716 NA non-coding upstream 653576 18629061 ~ 18629405 (-)
nrg4 NA other downstream 76300 17877026 ~ 17885395 (-)
LOC103041134 rps27l,zgc:136826,LOC107752326,LOC107598918,LOC101156845 other downstream 1491372 16467089 ~ 16470323 (-)
LOC103046265 pkp3 other downstream 2181017 15758303 ~ 15780678 (-)
LOC103040324 NA other downstream 2547082 15381329 ~ 15414613 (-)
LOC103037068 cpne8,LOC108274474,LOC107679956,LOC107752477,LOC107723993,LOC105026415,LOC106561599,LOC105028206 other downstream 2747411 15123814 ~ 15214284 (-)
G74591 isl2,LOC105022634 other upstream 7262 17982747 ~ 18029747 (-)
G74791 NA other upstream 963689 18939174 ~ 18940464 (-)
LOC103034453 LOC108436916,LOC107753633,LOC107659484,LOC107573489,LOC107752304,LOC108181664,LOC107598834 other upstream 1017183 18992668 ~ 19008366 (-)
G74838 wasl,LOC105896696,LOC108275301 other upstream 1095453 19070938 ~ 19072888 (-)
G75100 LOC108436948,LOC108275266 other upstream 1884209 19859694 ~ 19865982 (-)

Expression


Co-expression Network