scaper (scaper,LOC107712524,LOC107662441)


Basic Information

Item Value
gene id scaper
gene name scaper,LOC107712524,LOC107662441
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 17990487 ~ 18110831 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007246515.3
GGTGGTGGTGTCTCCGGGCTCCGCTGAGAGGagcagagaaagaggaggaggccTGTTTAATTTCTCGGTCCTCTCGCTGCTAGGTTACTGAGCGCAGGGCACACAGCGGAGTTCAGCTCGGGTCTGACAGGAGctgaaggaaagaaaaaggtCCATGTCTAAAGACAGCCGCCACGATGGCCGTCGACGTGGCGCTGGCCAGCAGCACCGCCTGGGGCCGAGAGGCGGCCAGGGCGCCGATGGGAGGGAGAGGTCAGGGAGCAacagctccagctcctctcACGGAGGAGGGAAAGGGAGGAGTACGCCCATCAACATCGCCCTCAAGGCCTCCTTCCAGCGTTCCAACAGCCATGATAAGGTGAGGAAGATTGTGGCAGAAGAGGGACGTGCCGCTCGCAACCTCATTGCCTGGAGTGTTCCTCTGGAAAACAAGGAGGAAGAAAGCAAACACATTCAAGTTCATGCTCAAGGGAAATCGAAGATTCACAGCAACAACAATGCAAGACCACAACGAATCAACTCTGGacaacacagaaacaaaaaacagACTGCAGCGCTGGACTGTAAGGCTCCTGCAGGGTCCATGCTGGAGAAGGGAGCAGAGAAAAGTCCCACTAAAGCCAGGCAGCCACGGAAAGTAGATTTGAGAGCACGCTACTGGGCCTTCCTGTTTGATAACCTGCGTCGGGCCGTAGATGAGATATACGTGACATGCGAGTCAGACCAGAGTGTTGTAGAGTGTAAGGAGGTGTTGATGATGTTGGACAACTATGTTCGGGACTTTAAAGCTCTCATCGACTGGATCCAGCTACAGGAGAAACTAGAGAAAACTGATGCCCAAAACAGGCCCACATCTTTGGCATGGGAGGTTCGTAAGATGTCTCCAGGACGCCATGTCATGCCCAGTCCATCAACAGACCGAATCGTTCCATCACCCAATGTTCGCCGTTCCTTGAACTTCGGGGGTCCTCCTCCCACTCTTGCAGTAGCACGTCTCTCCCATTCTGGCCCGAGCTGGGCTGACCGGGTAAAGTTCTCCCAGGCTATGCCTGTGACCAACCAAAATGTTCCAGGTCCCACAGAAAAACCCGggaaaaaagatgcagagggCTGGGAGACGGTACAGCGCGGTCGCTCGATGAGACCTCGCTCCATCGCCATGGTAGCTAAGGTCAGCCCTGTCCTGGCCCACGTCAGTCCCAAAGATGTCACTGATAAGGAGAACCAGCAGCTCCAGGCCTCTCCCCAGGACAAAGTGCAGGGGCCAAAGGAGCAGGGGGGACACGACAAGCTCACCTCCCCAGAGCAAAAGCCGGAGTGTGAGAAGGCTTCCGTCATCGAGCCCCCATCAGATCAACAGCCTGAGCAGTCTGTCAGTTCCACCTCTGACCATGTGCCACCCCTTGTGGCCGAATCCCTTCCAGCCCCTCCCTCGCCACAACCTCAAAGTCCACCTCCAGTCCCAGCTCCAGATCCTCCGTCCTGTCCAGAGTTAGGGGATGCTGGTGCTGGACTGGCTGGCGGAGGGGAGGTGGAGCAGGAGCCGGAGCCGAAGCAGGAGCAGGCGGGTGTGGGGGCAGTGTGGCAGGTCATGGCACcatctgctgctggaggagcagcagcagcagcatcaacagcagcagcagaagcggCCCATATTCCCCTGGCAGTGCTGAAACTGGAGAGCATTCTGGACCCCACAGAGCTTTCCACCCCCCAGTCCATGGCTGAGGTCTTGGCTAAGAAGGAGGAGCTGGCTGACCGGCTGGAGAAGGCTAATGAAGAGGCCATTGCCAGTGCTATCGCTGAGGAGGAGCAGCTGACTCGGGAGATCCTGGCAGAGAACAACGAGCTGGAGACAGATAACGAGAGTGAATTCTCTGCAAGTATTGGGAGCGGAGGATGTGGACTCAACTTGGACTGGAGTGACTTGCTGGCTGACTATGATGCGAGAGAGCCCTGGCGTCAGAGCACCTCATGGGGAGATATTGTGGAGGAGGAGCCATCTCGTCCACCTGGCCATGGCATCCATATGCATGAGAAACTCTCCTCACCATCCCGCAAAAGAACCATCGCTGAATCAAAGAAGAAGCACGAAGAGAAGCAGCTGAAAGCCCAGCAGCTACGAGACAAGCTAAGGGAGGAGAAGACCCACAAACTGCAGAAACTTTTAGAGAGGGAGAAGGAGGTGAGAAAGTGGAAAGAGGAGCTGCTGGATCAGAGAAGGAGGATGATGGAGGAGAAGCTCCTCCATGCTGAGTTCAAGCGGGAGCTGCAGCTCCAAGCCATCGTGAAGAAGGCTCAAGAAGAGGATGCAAAAGTGAATGAGATTGCATTCATAAACACGCTGGAGGCTCAGAACAAGAGGCACGATGTTCTGGCCAAGCTGAACGAGTATGAACAGCGCCTCAACGAGCTGCAGGAGGAGCGCCAGAGGAGGCAGGAGGAGAAACAAGCCAGAGATGAAGCTGTGCAGGAGCGTAAGCGTGCTCTGGAGGCAGAGCGTCAGGCGCGGGTGGAAGAGCTGTTAATGAAGAGGAGAGAGCAGGAGGCAAGGATTGAGCAGCAGCGGCAGGAgaaggagagagcgagagaggatgCTGCCCGCGAGAGAGCCAGAGACCGTGAGGAGCGTCTGGCTGCCCTCAGTGCAGCTCAGCAGGAGGCCATGGAGGAGTTGCAGAAGAAGATCCAAATGAAGCATGATGAGAGCAGCCGAAGGCACATGGAGCAGATTGAGCAGAGGAAGGAGAAGGCCGCTGAGCTGAGTAGTGGCAGACACGCCAATACTGACTACGCACCCAAACTGACACCCTACGAGCGCAAGAAACAGTGCTCCCTCTGCAGTGTTGTGATCACCTCGGAGGTGCACCTGTTCAGTCACACCAAGGGCAAGAGGCATCAGCAGGCTGTGAGGGACAGTAGCAGCATCCAGGGCAGAGAGCTGTCTGACGAAGAGGTGGAGCACCTGTCCTTAAAGAAATACATCGTAGACATAGTGACTGATACCACTGTAACTCCAGAGAGTGCCAAGGATGGAGAGGAGAGGCAGAAAGCACGGAAAAAGGCCAAGAAACTCAGAGCACGAATGAACTCAAGGGCTAAGGAGTATGAGACCTCTATGGAGGCTAAGATGCAGATTCCAGATTCTCCCTACAAAGCCAAgctgCAGCGTCTGGTGAAGGATTTGGGAAAGCAGCTGCAGGGGCAGGATAGTGGTCAGTGGGCCAACAACAAAGTCTCTGGTTTAGACCGAACGCTGGGCGAAATCTCACGAATTCTGGAGAAGCAGAATAATGCGGATCAAGTAGCTTTTCAGGTAGGAGGGGGTCTGTCTGCCCTGGAACAGATTCTACAGGTAGTTACCGCGGCCTCCAGTCCTACAGCTGTCCCACGCATTCCGCTGAAgtctCTGTGCGCCGCTGTGAATGTGTATTACCTGGCctgctcccgctgctacagcaaCTGCTCTTACGTTCTCTACAGCAACAAAATCGCCCCGCTCATGGACCTCTTGCTTCATCAGCTAACGcTATATGTTCCCGACGAGGATAAGTCCATCTTTGGCCGcagtgtgaacaagcaggtaTTTGAGGGCTTGACTACCGGGCTGCTTCAGACCACTGCCACAGTACTCTCACTCCTCACCCCCTCTGGGCCAGAGGCCGGGAGAGAATCCCCACAGATCTGCCCACCTGACGGCAAGAGTAAACCAGCCAGCACTGAAAACTTCAACACCCGCGCTCAAGACCTCATTAGCTATGTGGTGAATATGGGCTTGATTGACAAGCTGTACGGCTGCTTCCTGTATGTGCAAGGCCCGATCGATGAGAGTCCTAAGATGTCTGCCTTTCTGGAGCAGGCCACCGCTCTCCTCCACGCCATGTGCAAACTGTGCTTTGCTGTGACCAGTCGTTCCCCCAGTATCTTCGACAACAAacgtcaggaccccacaggactgACGTCGCTGCTACACAGCACTGACCTGGTTGGTGTTCTGCACATGCTGTACTGTATCCTGCTTCACAGTGCCCTGCCCGAGTCCCAGCCAGGCGGCCCAGCGTCACCACAGGAGCCCTATAACCCTGCTGTGATCCAGGTAGCCCTGCAGGGCCTCCGCTTCCTCAACAGCTTTGCTCTGCTTGACCTCGCTGCCTTCCAGgCTGTTCTAGGAGCAGAGGGGTTGTCTCTGGCTTTCAGGCATATTGTTAGCTCTCTGCTTTGGTACTGCTCTCAGAACAGCTCAGAGGATCTGCTGCATGAAGTTATCATCTGTGTGGGCTACTTCACAGTCAACCATCCAGACAACCAGGTGATTGTGCAGTCTGGCCGGCAGCCCAGCGTGCTGCAGAAACTGTGTCAGCTGCCGTTCCAGTACTTCAGCCACCCACGCCTCATCAAAGTGCTCTTCCCCTCACTCATCAGCGCCTGCTACAACAACCAGCAGAACAAGGTCATCCTGCAGCAGGAGATGAGCTGTGTGCTCCTGGCCACCTTCATACAGGACTGTGCCTCCAGTGAGAATCAGACAGATAGCAGGCCATCACAACATGAGAGGAGCAGTGCTGCACTGGATTACTGTGAGCTCTCCAACCGCTTCCCCAGAGAGCAGTGGGACTCCGCACTTCACTTCTTCCTCAACAAACAAGAGGAGTGAGCCAAAAGAGGAGAAGAGTGCACAGACTGCATAGCACACTCAGATGCACCATGACCATTCGTACCAGCACATTCACTCTAAGCACTACATATATCTACAGGAgatacaaagcaaaaaaaataggatttttttttctttacttttttaattctaATATTGGGCAAAATTTTAAGCAAGTCTTAAAAATCTGGCTGCTGCACGTAACATCTGAGTTTTGTTTAGACTTTATTAGCTCGCCTTAATTGAgttgtattaataaaaataattacatagtaaatgcagcttaaattttttttgttacttttttggacGTGCAATGTTAACATCACACACTGTAATAACAAACTGTTTGCACAATGCAGGTACTTAAGGGCAGTATAACACAGTCACATTTACAAAGTGGCTAGAATGTATGAACGTATTTCTtgtgtaaataaacagttattaGGGGCTGTCGATATACAGTGGAAGAAAGAAAAGATCCGTTGTGGCCCTTTCCTGGAATGCACACTAGTTTACTGTTCCTCTCCAAAGCTGGACATAGAACTTAGTGTTTTATAAATGAGGaggtatgttttgttttgtaaataaaagATGTTTGAAGGATATTTCTGAAAATTCAAAAGAACTGTTCAGAGAGTACAGTCGGTTACTTTACTTATTGCTGTGTATTAAAGGAAAAGAAACATTGCTTTCAAAAGCTGACAAAAATCATGATTATTTACTGGTTTTGAAATTTATACAAACTGAGTATTaggatatatatatgtattaactCTGATTTCCTtttcttaaaaaacactgtaagacatatttatgttaatgttgttgttgtttgctTTGTACTTGTTACTGAATGGTGAAGCACTTATAATTTAtagaattgattttttttttcacatttaataaaataaaaatatttaatgcatttttgtaATTGTCATGTTTTCAagacaatgttaaataaaatggaATTGAGCCAG

Function

symbol description
scaper Predicted to enable nucleic acid binding activity and zinc ion binding activity. Orthologous to human SCAPER (S-phase cyclin A associated protein in the ER).

NR:

description
S phase cyclin A-associated protein in the endoplasmic reticulum-like isoform X4

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K24869 SCAPER; S phase cyclin A-associated protein in the endoplasmic reticulum

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007246515.3 True 5643 mRNA 0.51 32 17990487 18110831

Neighbor

gene id symbol gene type direction distance location
etfa etfa,LOC107712526,LOC107557988 coding downstream 15002 17961695 ~ 17975485 (-)
LOC103045440 zgc:162595,LOC108433606,LOC108275248 coding downstream 390014 17588028 ~ 17600473 (-)
LOC103045127 rora,roraa,LOC108433630,LOC106561150,LOC106573506,LOC103141220 coding downstream 565026 16992911 ~ 17425461 (-)
ice2 NA coding downstream 1001997 16966782 ~ 16988490 (-)
LOC103044821 anxa2,LOC108433632,LOC107739086,LOC107724175,LOC107659511,LOC107550215 coding downstream 1024927 16958574 ~ 16965560 (-)
LOC103024839 ctdspl2a,LOC108275364,LOC107712523,LOC107688927,LOC107589331,LOC107557990,LOC107662443 coding upstream 5614 18116445 ~ 18123698 (-)
sqor sqrdl,LOC107662477,LOC107688928,LOC107589329,LOC105892492,LOC103363827 coding upstream 14956 18125787 ~ 18141692 (-)
galk2 galk2,LOC107688931,LOC107557993,LOC107589326 coding upstream 66851 18177682 ~ 18188399 (-)
LOC103025779 tjp1b,LOC108414298,LOC107589322 coding upstream 117521 18228352 ~ 18375654 (-)
duox1 duox1,LOC108436899,LOC107712499,LOC106561775 coding upstream 295490 18406321 ~ 18426094 (-)
G74556 tpm1,LOC108441842 non-coding downstream 124349 17845126 ~ 17866138 (-)
G74447 NA non-coding downstream 176522 17805335 ~ 17813965 (-)
G74407 NA non-coding downstream 735198 17254917 ~ 17255289 (-)
G74368 NA non-coding downstream 1189436 16797045 ~ 16801051 (-)
G74306 NA non-coding downstream 1204448 16770442 ~ 16786039 (-)
G74599 slc27a2,LOC108414297 non-coding upstream 107458 18218289 ~ 18227676 (-)
G74640 NA non-coding upstream 239800 18350631 ~ 18350936 (-)
G74704 lamb1,lamb1a,LOC107662456,LOC107739090,LOC107595246 non-coding upstream 491146 18601977 ~ 18607745 (-)
G74711 lamb1 non-coding upstream 502545 18613376 ~ 18614926 (-)
G74716 NA non-coding upstream 518230 18629061 ~ 18629405 (-)
nrg4 NA other downstream 105092 17877026 ~ 17885395 (-)
LOC103041134 rps27l,zgc:136826,LOC107752326,LOC107598918,LOC101156845 other downstream 1520164 16467089 ~ 16470323 (-)
LOC103046265 pkp3 other downstream 2209809 15758303 ~ 15780678 (-)
LOC103040324 NA other downstream 2575874 15381329 ~ 15414613 (-)
LOC103037068 cpne8,LOC108274474,LOC107679956,LOC107752477,LOC107723993,LOC105026415,LOC106561599,LOC105028206 other downstream 2776203 15123814 ~ 15214284 (-)
G74791 NA other upstream 828343 18939174 ~ 18940464 (-)
LOC103034453 LOC108436916,LOC107753633,LOC107659484,LOC107573489,LOC107752304,LOC108181664,LOC107598834 other upstream 881837 18992668 ~ 19008366 (-)
G74838 wasl,LOC105896696,LOC108275301 other upstream 960107 19070938 ~ 19072888 (-)
G75100 LOC108436948,LOC108275266 other upstream 1748863 19859694 ~ 19865982 (-)
G75207 api5,LOC107696269,LOC107753602 other upstream 1916331 20027162 ~ 20032027 (-)

Expression


Co-expression Network