sqor (sqrdl,LOC107662477,LOC107688928,LOC107589329,LOC105892492,LOC103363827)


Basic Information

Item Value
gene id sqor
gene name sqrdl,LOC107662477,LOC107688928,LOC107589329,LOC105892492,LOC103363827
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 18125787 ~ 18141692 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007246521.3
TGGGCGGATTAATTACTCTGGGCGAGACTGCGTTATCTTTCGTAGTGAGGGGGTTATGTAATATCCGCTGTAGTTAGTGAGAGTGTGATAGTGGAGTTTCCTCACAGTGACAGTAACTGTCTCTGGATCACCCGCTCTTCCCCTCCCGTGGGTGACGTGCAGAATGTAAACTACAGTGAACCAGGAACATCTCACACTCAGCAGGAAATCGCTCGGGCTGCATATGGTGGCTGGAACAAGCTCGTGCTCATTCTGAAGGACTGGGaTCGAATTAACTGCAGGACAATGGCTGTAGCATTCACTTCACATCTGGCTCCTATTAGGAAAAGCAGCcgggtgtttttttctctcaactCCTACATCCACAGCAGCAGCGGACTGGCCTCCAAGGAACACTACAAGATCGTTGTGCTTGGTGGAGGAAGTGCTGGCATTACGATGGGCGCCCGCATGAAAAGAAAAGTTGGTGCAGAGAATGTTGCCATTGTGGAACCCAGTGAGATGCACTATTACCAGCCAATCTGGACCCTTGTTGGGGCAGGGGCTAAAAGTATTAACTCATCCGGACGCCCCACCTCCAGCGTGATGCCCTCAGGAGTTAAATGGGTCAAGTCCAGCGTCACAAAGATTGaccccaaaaaacaaaatgtgtccTTAGACTCTGGCAAAGAACTTTCCTATGACTTTCTGATTGTAGCACTTGGCCTCACGCTTCACTATGAGAAGATCAAAGGCCTACCTGAAGCATTTGAACATCCTAAGATTGGCTCCAACTACTCACTGCAGACTGTGGAGAAGACGTGGAAGGCATTACAGGACTTCAAGGAAggaaatgctattttttcttttcccaaCACTCCAGTCAAGtgtgcaggagctcctcagaagATCATGTACCTTTCTGACGCCTACATGAGAAAGACAGGAAAGAGGGCTAAAGCCAACTTTGTCTACAACACGTCATTGCCAGTGCTGTTCGGAGTGAAGAAGTATGCTGATGCCTTGTGGGAAATTGTGAAAAAACGTGACATAAATGTGAACCTCAGACACAACCTAATTGAGGTCAGACCAGACAAACAGGAAGCTGTATTCGAGAACCTTGATAATCCTGCGGACACAAAGGTTTATGAGTATGAGATGCTCCATGTTACCCCTCCTATGGGACCACCTGCAGTGCTGAAAGGCTCTTTACTGGAGGACGGGGCAGGCTGGCTGGACGTAAACAAGGACACCCTTCAGCACAACACATACAGTAATGTTTTTGGAATCGGAGACTGCACCAATGTACCAACTTCcaaaactgctgctgctgtggCTGCCCAGTCTGCTGTCCTCGACAGAACCATTACCAAAGTAATGAAGAACGACAAGCCTGATAAAAAGTATGATGGCTACACCTCCTGTCCTCTGGTCACAAGCTTCAACACAGTTATCCTGGCAGAGTTTGACTACACTGGACAGCCTTTGGAAACCTTCCCTGTGGATCAGAGCAAAGAAAGTAGAATCATGTATCACATGAAAGCAGACCTGATGCCCCATCTGTACTGGCATGGTCTTCTCAAGGGGCTTTGGGGAGGCCCAGGACCATACAGaaaaatcatgcatcttgggatgAAATAGACTCTGGGCCTTCGAAAGGAATCAGCATTGCTAATATAAAACCATGCTCTGCTCAGATCTGATCGTAACATTGTAggtaaataataacaattactGTGGTTATTTACTAAGAAATGTACTTACATTATATAACCAAATGTTTAATGATTCCCTTTccaattaatgcatttatttcaaAGGCATACACATATAGCGTATCTAGGCCCTACAGAGACCATGCTTATTGCAGTCACAGGCTGTCTGGAACGATGGtcctccatccagtacttttaggTTGAGGataaggtggggtggtgatgATGAACAGGTGTCACAATACTTTTGGTCACATAGTGTACCTAACTCATTCTCTTGATGTTAAATATGCAGTGTATTGTGAAAGTTTAAAAGTACTAATTAGGAcgattactgtttattttaatgatatgGTAACTTTTAAGGATTTACCAAAAATGATACATTCTAAAAAATAGTTGTAATCATTTTCTAGCTTGTACAGATTGCTGATAAAACACTTTCAAGATAGCAATTTTATTTTTCGACAACTTGaagcacttgttttttttgcatttttggatAATATTAATGATCAATGACCTACTGTTCAAAACTTAGAGATGTGCAAAATAAAGTGATAAAAGTGACACAAGCAGTGAATTAGCATTTGCAGAAAGTGCATTTACCGGACcagtttcacttttttaaaatgaagcaaGGACCAGGGAAGACAGACTTACTCAAATGAACAAATATTAGAGCTCCCATTAGAAGCTGTGCTTTgtgaataataaattatttgaaagtacttgtCATACAGTTTTTGCATTCAAATAGTGCTGTGTCGCATCTCATCCTTGAAATGTGGCTTCCCGTTGTCTACTTCAGTAATAAATTCATTTAACAGTT
>XM_022672218.1
AACACTGACTGATGGATGCTGATAAcctgcattctctctctcttctctttcttctcagcGGAGGAAGCCCCTTCACACCGAGTCTCTACAGCCGCTGCCAGCAGCCCTCCTGCTTACCTTAAACGCCCGTCAATCCGATTCAGAAGCGaTCGAATTAACTGCAGGACAATGGCTGTAGCATTCACTTCACATCTGGCTCCTATTAGGAAAAGCAGCcgggtgtttttttctctcaactCCTACATCCACAGCAGCAGCGGACTGGCCTCCAAGGAACACTACAAGATCGTTGTGCTTGGTGGAGGAAGTGCTGGCATTACGATGGGCGCCCGCATGAAAAGAAAAGTTGGTGCAGAGAATGTTGCCATTGTGGAACCCAGTGAGATGCACTATTACCAGCCAATCTGGACCCTTGTTGGGGCAGGGGCTAAAAGTATTAACTCATCCGGACGCCCCACCTCCAGCGTGATGCCCTCAGGAGTTAAATGGGTCAAGTCCAGCGTCACAAAGATTGaccccaaaaaacaaaatgtgtccTTAGACTCTGGCAAAGAACTTTCCTATGACTTTCTGATTGTAGCACTTGGCCTCACGCTTCACTATGAGAAGATCAAAGGCCTACCTGAAGCATTTGAACATCCTAAGATTGGCTCCAACTACTCACTGCAGACTGTGGAGAAGACGTGGAAGGCATTACAGGACTTCAAGGAAggaaatgctattttttcttttcccaaCACTCCAGTCAAGtgtgcaggagctcctcagaagATCATGTACCTTTCTGACGCCTACATGAGAAAGACAGGAAAGAGGGCTAAAGCCAACTTTGTCTACAACACGTCATTGCCAGTGCTGTTCGGAGTGAAGAAGTATGCTGATGCCTTGTGGGAAATTGTGAAAAAACGTGACATAAATGTGAACCTCAGACACAACCTAATTGAGGTCAGACCAGACAAACAGGAAGCTGTATTCGAGAACCTTGATAATCCTGCGGACACAAAGGTTTATGAGTATGAGATGCTCCATGTTACCCCTCCTATGGGACCACCTGCAGTGCTGAAAGGCTCTTTACTGGAGGACGGGGCAGGCTGGCTGGACGTAAACAAGGACACCCTTCAGCACAACACATACAGTAATGTTTTTGGAATCGGAGACTGCACCAATGTACCAACTTCcaaaactgctgctgctgtggCTGCCCAGTCTGCTGTCCTCGACAGAACCATTACCAAAGTAATGAAGAACGACAAGCCTGATAAAAAGTATGATGGCTACACCTCCTGTCCTCTGGTCACAAGCTTCAACACAGTTATCCTGGCAGAGTTTGACTACACTGGACAGCCTTTGGAAACCTTCCCTGTGGATCAGAGCAAAGAAAGTAGAATCATGTATCACATGAAAGCAGACCTGATGCCCCATCTGTACTGGCATGGTCTTCTCAAGGGGCTTTGGGGAGGCCCAGGACCATACAGaaaaatcatgcatcttgggatgAAATAGACTCTGGGCCTTCGAAAGGAATCAGCATTGCTAATATAAAACCATGCTCTGCTCAGATCTGATCGTAACATTGTAggtaaataataacaattactGTGGTTATTTACTAAGAAATGTACTTACATTATATAACCAAATGTTTAATGATTCCCTTTccaattaatgcatttatttcaaAGGCATACACATATAGCGTATCTAGGCCCTACAGAGACCATGCTTATTGCAGTCACAGGCTGTCTGGAACGATGGtcctccatccagtacttttaggTTGAGGataaggtggggtggtgatgATGAACAGGTGTCACAATACTTTTGGTCACATAGTGTACCTAACTCATTCTCTTGATGTTAAATATGCAGTGTATTGTGAAAGTTTAAAAGTACTAATTAGGAcgattactgtttattttaatgatatgGTAACTTTTAAGGATTTACCAAAAATGATACATTCTAAAAAATAGTTGTAATCATTTTCTAGCTTGTACAGATTGCTGATAAAACACTTTCAAGATAGCAATTTTATTTTTCGACAACTTGaagcacttgttttttttgcatttttggatAATATTAATGATCAATGACCTACTGTTCAAAACTTAGAGATGTGCAAAATAAAGTGATAAAAGTGACACAAGCAGTGAATTAGCATTTGCAGAAAGTGCATTTACCGGACcagtttcacttttttaaaatgaagcaaGGACCAGGGAAGACAGACTTACTCAAATGAACAAATATTAGAGCTCCCATTAGAAGCTGTGCTTTgtgaataataaattatttgaaagtacttgtCATACAGTTTTTGCATTCAAATAGTGCTGTGTCGCATCTCATCCTTGAAATGTGGCTTCCCGTTGTCTACTTCAGTAATAAATTCATTTAACAGTT
>XM_022672219.1
ATTTTAGTCACCAGGACAAATATAACAGTCCAGAACTTAAATACAGTCTTTCTGTAAGTCATTTCACACACAATATAGTACCACACAATAATTAGCTGGTGGTTGTGGGTAAGCGGTTAAAGCTGCGCATTAATACCTTACAGAAGCTCCTATACAGCTCCACTGAAGCTCCATCCACACAGCATGGTGCACATCTGATGAAGCAATAATAATACAGCCTGGTATATtagacagcagcagcaccagcagcagtgcAGTCCTGTAGGCTACTGGAGACCACTCTGCCCAcGGAGGAAGCCCCTTCACACCGAGTCTCTACAGCCGCTGCCAGCAGCCCTCCTGCTTACCTTAAACGCCCGTCAATCCGATTCAGAAGCGaTCGAATTAACTGCAGGACAATGGCTGTAGCATTCACTTCACATCTGGCTCCTATTAGGAAAAGCAGCcgggtgtttttttctctcaactCCTACATCCACAGCAGCAGCGGACTGGCCTCCAAGGAACACTACAAGATCGTTGTGCTTGGTGGAGGAAGTGCTGGCATTACGATGGGCGCCCGCATGAAAAGAAAAGTTGGTGCAGAGAATGTTGCCATTGTGGAACCCAGTGAGATGCACTATTACCAGCCAATCTGGACCCTTGTTGGGGCAGGGGCTAAAAGTATTAACTCATCCGGACGCCCCACCTCCAGCGTGATGCCCTCAGGAGTTAAATGGGTCAAGTCCAGCGTCACAAAGATTGaccccaaaaaacaaaatgtgtccTTAGACTCTGGCAAAGAACTTTCCTATGACTTTCTGATTGTAGCACTTGGCCTCACGCTTCACTATGAGAAGATCAAAGGCCTACCTGAAGCATTTGAACATCCTAAGATTGGCTCCAACTACTCACTGCAGACTGTGGAGAAGACGTGGAAGGCATTACAGGACTTCAAGGAAggaaatgctattttttcttttcccaaCACTCCAGTCAAGtgtgcaggagctcctcagaagATCATGTACCTTTCTGACGCCTACATGAGAAAGACAGGAAAGAGGGCTAAAGCCAACTTTGTCTACAACACGTCATTGCCAGTGCTGTTCGGAGTGAAGAAGTATGCTGATGCCTTGTGGGAAATTGTGAAAAAACGTGACATAAATGTGAACCTCAGACACAACCTAATTGAGGTCAGACCAGACAAACAGGAAGCTGTATTCGAGAACCTTGATAATCCTGCGGACACAAAGGTTTATGAGTATGAGATGCTCCATGTTACCCCTCCTATGGGACCACCTGCAGTGCTGAAAGGCTCTTTACTGGAGGACGGGGCAGGCTGGCTGGACGTAAACAAGGACACCCTTCAGCACAACACATACAGTAATGTTTTTGGAATCGGAGACTGCACCAATGTACCAACTTCcaaaactgctgctgctgtggCTGCCCAGTCTGCTGTCCTCGACAGAACCATTACCAAAGTAATGAAGAACGACAAGCCTGATAAAAAGTATGATGGCTACACCTCCTGTCCTCTGGTCACAAGCTTCAACACAGTTATCCTGGCAGAGTTTGACTACACTGGACAGCCTTTGGAAACCTTCCCTGTGGATCAGAGCAAAGAAAGTAGAATCATGTATCACATGAAAGCAGACCTGATGCCCCATCTGTACTGGCATGGTCTTCTCAAGGGGCTTTGGGGAGGCCCAGGACCATACAGaaaaatcatgcatcttgggatgAAATAGACTCTGGGCCTTCGAAAGGAATCAGCATTGCTAATATAAAACCATGCTCTGCTCAGATCTGATCGTAACATTGTAggtaaataataacaattactGTGGTTATTTACTAAGAAATGTACTTACATTATATAACCAAATGTTTAATGATTCCCTTTccaattaatgcatttatttcaaAGGCATACACATATAGCGTATCTAGGCCCTACAGAGACCATGCTTATTGCAGTCACAGGCTGTCTGGAACGATGGtcctccatccagtacttttaggTTGAGGataaggtggggtggtgatgATGAACAGGTGTCACAATACTTTTGGTCACATAGTGTACCTAACTCATTCTCTTGATGTTAAATATGCAGTGTATTGTGAAAGTTTAAAAGTACTAATTAGGAcgattactgtttattttaatgatatgGTAACTTTTAAGGATTTACCAAAAATGATACATTCTAAAAAATAGTTGTAATCATTTTCTAGCTTGTACAGATTGCTGATAAAACACTTTCAAGATAGCAATTTTATTTTTCGACAACTTGaagcacttgttttttttgcatttttggatAATATTAATGATCAATGACCTACTGTTCAAAACTTAGAGATGTGCAAAATAAAGTGATAAAAGTGACACAAGCAGTGAATTAGCATTTGCAGAAAGTGCATTTACCGGACcagtttcacttttttaaaatgaagcaaGGACCAGGGAAGACAGACTTACTCAAATGAACAAATATTAGAGCTCCCATTAGAAGCTGTGCTTTgtgaataataaattatttgaaagtacttgtCATACAGTTTTTGCATTCAAATAGTGCTGTGTCGCATCTCATCCTTGAAATGTGGCTTCCCGTTGTCTACTTCAGTAATAAATTCATTTAACAGTT

Function

NR:

description
PREDICTED: sulfide:quinone oxidoreductase, mitochondrial-like isoform X1

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K22470 SQOR; eukaryotic sulfide quinone oxidoreductase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007246521.3 False 2526 mRNA 0.43 10 18125787 18134754
XM_022672218.1 False 2409 mRNA 0.43 10 18125787 18141326
XM_022672219.1 True 2639 mRNA 0.43 11 18125787 18141692

Neighbor

gene id symbol gene type direction distance location
LOC103024839 ctdspl2a,LOC108275364,LOC107712523,LOC107688927,LOC107589331,LOC107557990,LOC107662443 coding downstream 2089 18116445 ~ 18123698 (-)
scaper scaper,LOC107712524,LOC107662441 coding downstream 14956 17990487 ~ 18110831 (-)
etfa etfa,LOC107712526,LOC107557988 coding downstream 150302 17961695 ~ 17975485 (-)
LOC103045440 zgc:162595,LOC108433606,LOC108275248 coding downstream 525314 17588028 ~ 17600473 (-)
LOC103045127 rora,roraa,LOC108433630,LOC106561150,LOC106573506,LOC103141220 coding downstream 700326 16992911 ~ 17425461 (-)
galk2 galk2,LOC107688931,LOC107557993,LOC107589326 coding upstream 35990 18177682 ~ 18188399 (-)
LOC103025779 tjp1b,LOC108414298,LOC107589322 coding upstream 86660 18228352 ~ 18375654 (-)
duox1 duox1,LOC108436899,LOC107712499,LOC106561775 coding upstream 264629 18406321 ~ 18426094 (-)
LOC103028541 apba2,LOC108436900,LOC105892347,LOC106584731,LOC106530680,LOC103462423 coding upstream 288646 18430338 ~ 18448555 (-)
parp16 parp16,LOC107662480,LOC107589319,LOC107595248 coding upstream 319683 18461375 ~ 18468113 (-)
G74556 tpm1,LOC108441842 non-coding downstream 259649 17845126 ~ 17866138 (-)
G74447 NA non-coding downstream 311822 17805335 ~ 17813965 (-)
G74407 NA non-coding downstream 870498 17254917 ~ 17255289 (-)
G74368 NA non-coding downstream 1324736 16797045 ~ 16801051 (-)
G74306 NA non-coding downstream 1339748 16770442 ~ 16786039 (-)
G74599 slc27a2,LOC108414297 non-coding upstream 76597 18218289 ~ 18227676 (-)
G74640 NA non-coding upstream 208939 18350631 ~ 18350936 (-)
G74704 lamb1,lamb1a,LOC107662456,LOC107739090,LOC107595246 non-coding upstream 460285 18601977 ~ 18607745 (-)
G74711 lamb1 non-coding upstream 471684 18613376 ~ 18614926 (-)
G74716 NA non-coding upstream 487369 18629061 ~ 18629405 (-)
G74591 isl2,LOC105022634 other downstream 96040 17982747 ~ 18029747 (-)
nrg4 NA other downstream 240392 17877026 ~ 17885395 (-)
LOC103041134 rps27l,zgc:136826,LOC107752326,LOC107598918,LOC101156845 other downstream 1655464 16467089 ~ 16470323 (-)
LOC103046265 pkp3 other downstream 2345109 15758303 ~ 15780678 (-)
LOC103040324 NA other downstream 2711174 15381329 ~ 15414613 (-)
G74791 NA other upstream 797482 18939174 ~ 18940464 (-)
LOC103034453 LOC108436916,LOC107753633,LOC107659484,LOC107573489,LOC107752304,LOC108181664,LOC107598834 other upstream 850976 18992668 ~ 19008366 (-)
G74838 wasl,LOC105896696,LOC108275301 other upstream 929246 19070938 ~ 19072888 (-)
G75100 LOC108436948,LOC108275266 other upstream 1718002 19859694 ~ 19865982 (-)
G75207 api5,LOC107696269,LOC107753602 other upstream 1885470 20027162 ~ 20032027 (-)

Expression


Co-expression Network