galk2 (galk2,LOC107688931,LOC107557993,LOC107589326)


Basic Information

Item Value
gene id galk2
gene name galk2,LOC107688931,LOC107557993,LOC107589326
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 18177682 ~ 18188399 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007246528.3
TGCTCTGAATGAGAGAGATTTCCCTCTTCCGTGTTGCTGGTGCAGAATATTGCTGGTGTGATTGTCAGCTGATGAACTTCTGCAGTTTGAGGGTTCTGCTCTCCCTGTGCCCACTCTAATAACTCCACAACCATGGCTGTAAATCCACCAAAGATTAAAGTGCTGCTCAGTGCCAACGAGAGACTGCAGAAACTGAAAGAGGCATTTCATGGAAAATATAAAGAATCTCCTCTGTTTTATGCATGTGCACCTGGGAGAGTAAATCTAATAGGGGAACACATTGACTATTGTGGCTATGCTGTCCTCCCCATGGCCATTGAGCAGAATATTCTTGCTGCTGTATCAGTAAACAGTTCTCAAACCATCCAGCTGGCCAACACTGACCCCAAGTACAAGGATTTCACTGTGTCTGTCAATGAAATCACCATAGACAGAGAGAATCCTCAATggcattattattttctatgtgGAGTTAAAGGTGTTCAgGAACAGCTAGGTTTGTCCTCTATGACTGGAATCAGCTGTGTTGTGGATGGGACTATTCCTGCTAGCTCAGGGCTGTCTAGCTCCAGTGCCTTGGTGTGCTGTGCTGGTCTGGTCACAATGGAAGCCAATCAGAAGACCATTTCTAAAGTACTGCTTGCTGAAACATGTGCCAAGTGTGAAAGGTACATTGGGACTGAAGGAGGAGGGATGGATCAGTCCATATCTTTTCTGGCTGAAGAAGGAACGGCAAAACTGATCGAGTTCAATCCCCTGCGGGCCACAGATGTGAAACTTCCTGAAGGCGCAGTCTTTGTGATTGCTAACAGTTGTGTGGAGATGAACAAGGCAGCTTCTTCCCACTTCAACATTAGAGTAGTGGAATGTCGCATTGCCACAAAGGTGTTGGCTAAGGCCAGAGGCCTGGAGTGGAGCAGCCTTCAGAAGCTGGGGGATTTGCAGACAGCGCTGGGTTTGAGTCTGGAAAAGATGCTGGATTTGGTAGAGGAAGTCCTGCACCCTGAGCCCTACAGCAGAGAGGAAATCTGCAAGATTCTAGGAATAACCACTGAGCAGCTCAGCAAAAACATCCTCAGTGCTAACACTCAGCATGTGACCCACTTCAGACTGTACCAGCGAGCCAGGCATGTGTACAGTGAGGCTGACCGTGTGCTGCAGTTCAAGGCTGTGTGTGACTCATCTCCTGATGGTGCTGTCCTGCAGCTGGGCAATCTAATGAACCAGAGCCACACTAGCTGCAGAGACTTGTATGAGTGTAGCTGCCCAGAGCTGGACCAGCTGGTGGACATTTGTCTGCAGGCCGGTGCCGTGGGCTCTAGGTTAACAGGCGCTGGATGGGGAGGCTGCACGGTTTCCATGGTACCCACTGAAAGGATGGATTCTTTTCTCCGGACAGTGAAGGAGCAGTACTACACGCCTGATGCTCGAAGAGCTGCTCTGGTACAGCAGAGCCTGTTCGTAACAAGGCCAGGGGGAGGAGCGGCCATTTTTACAGAAGAATAAAACACGAGGGATCATTTTTAAACCATATGAAGGGGTTCTGACAGTGATCAAAGGGATTCTAATAGATCTAAAAAAGGGAAAGCTACACATATACCTCTCAATTTTTTCTTATTATCTGTAATCATTTTGTATGCTTGTACAAATTTCTAAGTGATTTCTTCTGATTAAAAAGACATCTGTAGACCA

Function

symbol description
galk2 Predicted to enable galactokinase activity. Predicted to be involved in galactose metabolic process. Predicted to act upstream of or within carbohydrate phosphorylation. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Orthologous to human GALK2 (galactokinase 2).

NR:

description
N-acetylgalactosamine kinase

GO: NA

KEGG:

id description
K18674 GALK2; N-acetylgalactosamine kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007246528.3 True 1692 mRNA 0.47 10 18177682 18188399

Neighbor

gene id symbol gene type direction distance location
sqor sqrdl,LOC107662477,LOC107688928,LOC107589329,LOC105892492,LOC103363827 coding downstream 35990 18125787 ~ 18141692 (-)
LOC103024839 ctdspl2a,LOC108275364,LOC107712523,LOC107688927,LOC107589331,LOC107557990,LOC107662443 coding downstream 53984 18116445 ~ 18123698 (-)
scaper scaper,LOC107712524,LOC107662441 coding downstream 66851 17990487 ~ 18110831 (-)
etfa etfa,LOC107712526,LOC107557988 coding downstream 202197 17961695 ~ 17975485 (-)
LOC103045440 zgc:162595,LOC108433606,LOC108275248 coding downstream 577209 17588028 ~ 17600473 (-)
LOC103025779 tjp1b,LOC108414298,LOC107589322 coding upstream 39953 18228352 ~ 18375654 (-)
duox1 duox1,LOC108436899,LOC107712499,LOC106561775 coding upstream 217922 18406321 ~ 18426094 (-)
LOC103028541 apba2,LOC108436900,LOC105892347,LOC106584731,LOC106530680,LOC103462423 coding upstream 241939 18430338 ~ 18448555 (-)
parp16 parp16,LOC107662480,LOC107589319,LOC107595248 coding upstream 272976 18461375 ~ 18468113 (-)
dld dld coding upstream 430737 18619136 ~ 18625195 (-)
G74556 tpm1,LOC108441842 non-coding downstream 311544 17845126 ~ 17866138 (-)
G74447 NA non-coding downstream 363717 17805335 ~ 17813965 (-)
G74407 NA non-coding downstream 922393 17254917 ~ 17255289 (-)
G74368 NA non-coding downstream 1376631 16797045 ~ 16801051 (-)
G74306 NA non-coding downstream 1391643 16770442 ~ 16786039 (-)
G74599 slc27a2,LOC108414297 non-coding upstream 29890 18218289 ~ 18227676 (-)
G74640 NA non-coding upstream 162232 18350631 ~ 18350936 (-)
G74704 lamb1,lamb1a,LOC107662456,LOC107739090,LOC107595246 non-coding upstream 413578 18601977 ~ 18607745 (-)
G74711 lamb1 non-coding upstream 424977 18613376 ~ 18614926 (-)
G74716 NA non-coding upstream 440662 18629061 ~ 18629405 (-)
G74591 isl2,LOC105022634 other downstream 147935 17982747 ~ 18029747 (-)
nrg4 NA other downstream 292287 17877026 ~ 17885395 (-)
LOC103041134 rps27l,zgc:136826,LOC107752326,LOC107598918,LOC101156845 other downstream 1707359 16467089 ~ 16470323 (-)
LOC103046265 pkp3 other downstream 2397004 15758303 ~ 15780678 (-)
LOC103040324 NA other downstream 2763069 15381329 ~ 15414613 (-)
G74791 NA other upstream 750775 18939174 ~ 18940464 (-)
LOC103034453 LOC108436916,LOC107753633,LOC107659484,LOC107573489,LOC107752304,LOC108181664,LOC107598834 other upstream 804269 18992668 ~ 19008366 (-)
G74838 wasl,LOC105896696,LOC108275301 other upstream 882539 19070938 ~ 19072888 (-)
G75100 LOC108436948,LOC108275266 other upstream 1671295 19859694 ~ 19865982 (-)
G75207 api5,LOC107696269,LOC107753602 other upstream 1838763 20027162 ~ 20032027 (-)

Expression


Co-expression Network