cops2 (cops2,LOC107557994,LOC107589327)


Basic Information

Item Value
gene id cops2
gene name cops2,LOC107557994,LOC107589327
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 18190011 ~ 18195649 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007246529.3
TATTTTGAGCCGCGGAGGACGCTGGGAGTGTTTCGGCCCTGTTCCCCGGTCAAAATGTCTGACATGGAGGATGATTTCATGTGCGACGATGAAGAAGATTATGACCTGGAATATTCAGAGGACAGTAACTCTGAGCCAAATGTCGACTTGGAGAATCAGTACTACAATTCCAAAGCCCTAAAAGAAGATGATCCAAAAGCAGCCTTGAGCAGCTTTCAGAAGGTGCTGGAGCTTGAGGGAGAAAAAGGAGAATGGGGGTTCAAAGCACTGAAACAGATGATTAAAATCAACTTCAAGCTGacaAACTTTCCTGAAATGATGAACCGTTACAAACAGCTCCTAACATATATACGAAGTGCTGTCACAAGGAATTACTCTGAAAAATCCATAAACTCCATTCTAGATTACATTTCAACCTCCAAACAGATGGATTTACTTCAGGAATTTTATGAGACTACTCTAGAGGCACTAAAAGATGCCAAAAATGACAGACTTTGGTTTAAAACCAATACTAAGTTGGGGAAGTTGTATCTGGAGAGAGAAGAGTATGGAAAACTTCAGAAAATTCTCAGGCAGTTGCACCAGTCCtgtcagACGGATGATGGGGAAGATGACCTCAAAAAAGGCACACAGCTGTTAGAAATCTATGCTTTAGAAATCCAGATGTACACCGCACAGAAGAACAACAAGAAGCTAAAAGCTCTCTATGAACAGTCTTTACACATCAAATCTGCGATTCCTCATCCCCTCATCATGGGAGTCATCAGAGAATGTGGTGGAAAAATGCACTTAAGGGAGGGAGAATTTGAGAAGGCACACACAGACTTTTTTGAGGCATTCAAAAATTATGATGAATCTGGAAGCCCCAGACGAACCACTTGTTTAAAGTACTTGGTCTTGGCCAACATGCTGATGAAGTCAGGAATAAACCCATTTGATTCTCAAGAGGCAAAACCCTACAAAAATGATCCAGAAATTCTAGCAATGACGAACTTGGTAAGtgcCTACCAGAATAATGACATCACAGAGTTTGAGAAAATCTTGAAGACGAATCACAGTAACATAATGGATGACCCCTTCATCAGGGAGCATATTGAGGagctGTTACGGAACATACGAACACAAGTGCTCATCAAATTAATTAAGCCTTACACTAGAATACACATACCCTTCATTTCaaagGAACTGAACATTGATGTTGCGGATGTGGAAAGCTTGCTTGTGCAGTGTATACTAGACAACACAATCAATGGCCGAATTGACCAGGTTAACCAGCTGTTGGAGCTTGATCACCAGAAGAGAGGCGGTGCTCGATACACAGCCCTAGACAAATGGACCAATCAGCTGAATTCTCTCAATCAGGCCATTGTCAGTAAACTGGCTTGATCGGCCACTCAAGATCTCCAAACAGTTATAGTTCACACGGCAGCCAGACGGGTCTGAGGGCTGTCAGTGACACAAACTCCTTTCAGGTCCTGTACCCCCGATCACTGATTGACATGAAGTGTGTGCTTAAACTGGCTAGTTTGTGTTATGCAGCTGCAGATACTTAAGCCCCAACAGCTTTATACATCCTGAACAAAACAGAAATGCCCAAAGGAAATCTGCTCTTCTGAATCTTCTGAAGTCCACTGTAACAATGTTCTTTAGACTGTGGTGGAGTCATCTTGGGAAGTGgagaaacattattttaatcCCATGTATTGACATTTGGTTATGACAAACATTTTGAAAGGtatatgttttacctttttctgGAGGTGTGAGAATACTCTGTAATAAACTGAAAATGTTTATCTGTTGAACACTGTCACAGCcagcatgttttatttgttttgctgaAAGATCCACTTTTCAAGTTTTAGATAGATGCACAGCAATGCCTGTGAATAAAGTACTGTCATCACTAGAACTCCTCTAGTTTTCACCAGTGCAAAACAGTACAAGGGTGAGTTTCCAAAACACTGACCCTCTTCGGCAattgagagaaagtgtgagaatGCGTTcaagtaattcagtttaattgaTCTACAGTGCTTTTGGTAACCTCACCCCCGATCAGATAAGTTATGCTATGTAAGCTCTATTGTTTCATATTtgaagaacaaaataaaagatgCATTTGTTGCTTCagaaaa

Function

symbol description
cops2 Predicted to be involved in negative regulation of nucleic acid-templated transcription and protein deneddylation. Predicted to be located in nucleus. Predicted to be part of COP9 signalosome. Orthologous to human COPS2 (COP9 signalosome subunit 2).

NR:

description
COP9 signalosome complex subunit 2-like

GO:

id name namespace
GO:0008180 COP9 signalosome cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K12176 COPS2, CSN2, TRIP15; COP9 signalosome complex subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007246529.3 True 2138 mRNA 0.41 13 18190011 18195649

Neighbor

gene id symbol gene type direction distance location
atp8b4 atp8b4 coding upstream 12596 18141013 ~ 18177415 (+)
isl2 isl2,isl2a,LOC107589357,LOC107662481,LOC107712508,LOC107688926 coding upstream 203787 17979428 ~ 17986224 (+)
tmem266 tmem266,LOC107557978 coding upstream 228350 17887308 ~ 17961661 (+)
lactb lactb,LOC107712527,LOC107659517,LOC107589333,LOC107557987 coding upstream 313772 17868563 ~ 17876239 (+)
tpm1 tpm1,LOC107712528,LOC107659515,LOC107739081,LOC103141214,LOC103379363,LOC103149890,LOC108237348,LOC103040917,LOC108441842,LOC107589334 coding upstream 323883 17845101 ~ 17866128 (+)
cep152 NA coding downstream 501 18196150 ~ 18211686 (+)
LOC103027907 slc27a2,LOC108414297 coding downstream 18460 18214109 ~ 18227746 (+)
LOC103028223 duoxa2,LOC103028223 coding downstream 231215 18426864 ~ 18430628 (+)
LOC103028854 eif3j,LOC107688938,LOC107739069,LOC108275014 coding downstream 252659 18448308 ~ 18452812 (+)
LOC103026409 LOC108436903 coding downstream 260944 18456593 ~ 18459147 (+)
G74477 NA non-coding upstream 7906 18115583 ~ 18182105 (+)
G74479 NA non-coding upstream 10241 18177695 ~ 18179770 (+)
G74494 ctdspl2a,LOC108411888,LOC108275364,LOC107557990,LOC107739078,LOC107662443,LOC107589331 non-coding upstream 66176 18120609 ~ 18123835 (+)
G74471 scaper non-coding upstream 194878 17994594 ~ 17995133 (+)
G74461 NA non-coding upstream 225236 17961696 ~ 17964775 (+)
G74510 NA non-coding downstream 16263 18211912 ~ 18213361 (+)
G74535 LOC108436883 non-coding downstream 176067 18371716 ~ 18375539 (+)
G74654 NA non-coding downstream 265795 18461444 ~ 18462636 (+)
G74668 NA non-coding downstream 338159 18533808 ~ 18534130 (+)
G74672 NA non-coding downstream 429422 18625071 ~ 18626410 (+)
G74169 NA other upstream 1901682 16286676 ~ 16288329 (+)
svip svip other upstream 2612478 15572302 ~ 15577533 (+)
rpgrip1l rpgrip1l other upstream 3269008 14891534 ~ 14921003 (+)
G73533 NA other upstream 3540460 14648829 ~ 14649551 (+)
LOC103043719 NA other upstream 5292080 12871484 ~ 12897931 (+)
G74649 NA other downstream 259202 18454851 ~ 18455197 (+)
LOC103029914 scamp5,scamp5a,LOC108436905,LOC103363822,LOC107395508,LOC107703195 other downstream 275055 18470704 ~ 18479345 (+)
G74832 NA other downstream 887167 19082816 ~ 19085556 (+)
cadps2 NA other downstream 944500 19140149 ~ 19322775 (+)
tmem17 tmem17,znf774,LOC107678976,LOC107753710 other downstream 1264309 19459958 ~ 19462187 (+)

Expression


Co-expression Network