LOC103027907 (slc27a2,LOC108414297)


Basic Information

Item Value
gene id LOC103027907
gene name slc27a2,LOC108414297
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 18214109 ~ 18227746 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007246531.3
TAAAGCCTGAAGTTGTGGCTGTTCGCTGCAGGAATTTTAAGTCTCTGGGAGCCGCGCCATGCTGCTCTCCTGAAGCTGAGAGTGAGACGCGCAGATCCAGATCCAGTATGATGGTGTGGGTGACTCTGCTGGCCGGCCtggcgctgctgccgctgctgctgaaGCTCCTGTCTCCCTACTTTCTGCAGGACCTCGTGTACATATGGAGAGCTGTGGGGTTCGGGGTCAGGCTGGAGCTGTACAAGAGGAGGACCCCGTTCTACAGCATCCTGGACCGCTTCCTGGACTTCACCAGGAGAAACCCCCACAAGCCCTTCATCCACTTCGAGGGGAACACCTACTCCTACTCGGATGTGGACAGACGCAGCAATAAAGTGGCGAACGCGCTGAGGATGGTGGCTGGGCTGAAGGAGGGGGACACGGTTGCCATGTTTCTGGGGAATGAGCCCTGCTTTGCCTGGGTTTGGCTCGGATTAGCTAAACTCGGCTGCACTGCTGCTTTACTCAACTTTAACATCAGATCCAGATCCCTGCTGCACTGCTTCTCCTGCTGCGGGGCCAGCGTGCTCATAGCGGCTGAAGACCTCCGTGGTGCTGTGGAGGAGATATTGCCTGCTTTGAAAGAGAAGGGCATCTCTGTGTACCTTCTCAGTGATGAGTGCAGTACGGACGGCATCCAGAGCATCTCTCAGGCCATCCAACTGGCCTCAGATGAACCCCTGTCTTTATCTCTCAGATCTAATCTCAAAGCCCGAAGCACAGCTTTCTACATCTACACATCTGGAACCACAGGTCTCCCTAAAGCAGCTGTGGTCACTCAGGAAAGGGTCTGGGCAGGGTCGTTTGTTCAGGGTGTATCTGGAGTCACTGCGGAGGATGTGTTCTACATCAATCTGCCCCTCTATCACAGTGCTGGCTTTATGATTGGACTCATTGGATGTATAGAAAGAGGGAACACTGCTGTTCTGCGGAGGAAGTTCTCTGCCTCTCAGTTCTGGGATGACTGCAGAAAGTATGATGTCACTGTGATGCAGTATATTGGGGAAACGATGCGTTATCTCTGCAACACGCCAAAGAAAGACAATGACAGAGACCACAAAGTGAAAATCGCTATAGGTAATGGTGTACGAGCTGACGTCTGGAAGGAATTCCTGAAACGCTTTGGGAACATTTACGTCAGGGAGCTCTACGCTGCCACAGAGGGAAATATCGGATTTATTAACTACACCACTAAAGTGGGTGTGGTCGGCCGTGTCAACGTCCTCCACAAGaaACTCTTCCCCTACGCCCTCATCAAGTTCGACATAGAGAAAGAAGAGCCAGTGAGAACAGCTGATGGACTCTGTGTTCCAGCTGCTCAAGGTGAGGCTGGACTGCTGGTTGGAAGAATCACCAAAAAGTCTCCGTTTGTCGGCTACGCTGGAAACGAGCAGCAGACGGAGAAGAAGCGGCTCAGAGATGTGTTCGTTAAaggagatatatattttaacagtggAGATCTGCTAAAAATCGACCATGAAAACTTTGTCTACTTCCAGGATCGAGTTGGAGACACCTTCAGATGGAAGGGAGAGAATGTAGCAACGACTGAAGTGGCAGACATCCTCTCTATGGTGGACTGCATCGAGGAGGCCAATGTCTATGGTGTTACAGTCAAAGGGCACGAGGGAAGAATTGGAATGGCAGCCGTTACATTAAAGGAGGGGAACGAGTTTGATTGTGTCGACACGTGTAAAGTTGTTGCCAATTACCTACCAGTTTATGCCAGACCACGATTCATTCGCATTCAGGAATCGCTGGAACTCACAGGAACCTTCAAGATGAAAAAGGtgaaactggtggaggaggggtTTGATCCAGCTCTTATTCAGGATCCTCTCTACTTCCTTGATCTGAATCAGAAGAAATACGTTTCACTTACTCTGGACATTTATAACTCGCTGTTGGCCGGAGATATTAAACTATAAATCTAGAAATGTACAAATGTTCTAATCAAATATGTAAACTTTTAACacttgtgtttttctgtgtgccttacgaaaaagaataataatgtaTACTAAAATAGTTACAAACTAATCTCAGGGAAAATAACAGTTcttctattttaatattttttgaccAATTCAATAAGCAATTTCTATGTTAATAATTGTATGattgtaataaaatgtttttaaatctttaaaatctttt

Function

symbol description
slc27a2 Enables CoA-ligase activity; enzyme binding activity; and long-chain fatty acid transporter activity. Involved in methyl-branched fatty acid metabolic process and monocarboxylic acid metabolic process. Located in endoplasmic reticulum lumen; endoplasmic reticulum membrane; and peroxisomal membrane. Is integral component of endoplasmic reticulum membrane and integral component of peroxisomal membrane.

NR:

description
PREDICTED: very long-chain acyl-CoA synthetase-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K08746 SLC27A2, FACVL1, FATP2; solute carrier family 27 (fatty acid transporter), member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007246531.3 True 2196 mRNA 0.47 10 18214109 18227746

Neighbor

gene id symbol gene type direction distance location
cep152 NA coding upstream 2423 18196150 ~ 18211686 (+)
cops2 cops2,LOC107557994,LOC107589327 coding upstream 18460 18190011 ~ 18195649 (+)
atp8b4 atp8b4 coding upstream 36694 18141013 ~ 18177415 (+)
isl2 isl2,isl2a,LOC107589357,LOC107662481,LOC107712508,LOC107688926 coding upstream 227885 17979428 ~ 17986224 (+)
tmem266 tmem266,LOC107557978 coding upstream 252448 17887308 ~ 17961661 (+)
LOC103028223 duoxa2,LOC103028223 coding downstream 199118 18426864 ~ 18430628 (+)
LOC103028854 eif3j,LOC107688938,LOC107739069,LOC108275014 coding downstream 220562 18448308 ~ 18452812 (+)
LOC103026409 LOC108436903 coding downstream 228847 18456593 ~ 18459147 (+)
LOC103030240 LOC103030240,LOC108436888 coding downstream 256708 18484454 ~ 18496455 (+)
ubl7 ubl7a,ubl7,LOC108436908,LOC108274434,LOC107703185 coding downstream 278860 18506606 ~ 18513315 (+)
G74510 NA non-coding upstream 748 18211912 ~ 18213361 (+)
G74477 NA non-coding upstream 32004 18115583 ~ 18182105 (+)
G74479 NA non-coding upstream 34339 18177695 ~ 18179770 (+)
G74494 ctdspl2a,LOC108411888,LOC108275364,LOC107557990,LOC107739078,LOC107662443,LOC107589331 non-coding upstream 90274 18120609 ~ 18123835 (+)
G74471 scaper non-coding upstream 218976 17994594 ~ 17995133 (+)
G74535 LOC108436883 non-coding downstream 143970 18371716 ~ 18375539 (+)
G74654 NA non-coding downstream 233698 18461444 ~ 18462636 (+)
G74668 NA non-coding downstream 306062 18533808 ~ 18534130 (+)
G74672 NA non-coding downstream 397325 18625071 ~ 18626410 (+)
G74714 NA non-coding downstream 399903 18627649 ~ 18628028 (+)
G74169 NA other upstream 1925780 16286676 ~ 16288329 (+)
svip svip other upstream 2636576 15572302 ~ 15577533 (+)
rpgrip1l rpgrip1l other upstream 3293106 14891534 ~ 14921003 (+)
G73533 NA other upstream 3564558 14648829 ~ 14649551 (+)
LOC103043719 NA other upstream 5316178 12871484 ~ 12897931 (+)
G74649 NA other downstream 227105 18454851 ~ 18455197 (+)
LOC103029914 scamp5,scamp5a,LOC108436905,LOC103363822,LOC107395508,LOC107703195 other downstream 242958 18470704 ~ 18479345 (+)
G74832 NA other downstream 855070 19082816 ~ 19085556 (+)
cadps2 NA other downstream 912403 19140149 ~ 19322775 (+)
tmem17 tmem17,znf774,LOC107678976,LOC107753710 other downstream 1232212 19459958 ~ 19462187 (+)

Expression


Co-expression Network