parp16 (parp16,LOC107662480,LOC107589319,LOC107595248)


Basic Information

Item Value
gene id parp16
gene name parp16,LOC107662480,LOC107589319,LOC107595248
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 18461375 ~ 18468113 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007246536.3
ATCAGATTTAGCagtagtacagtgtgtgtatgtaggggGTAGCGGGGCAGGTGCAGCTGGGCGGTCGGTCGGCTCTGCTGCTCCCacatgataaagtgagctggacCGGCGGAACAGGACGGAACAGGACTCTGATGAGTGTAAACGCTGAGCTGCGGAACTTCAGACAGTTCTAGCGTTGGGAATGCAGCCGCCTCTACCACCAGCCAGCGTCAGAGAGCTGGTCCGCTCCTGTCTCCATCTTGACCCTGTGGCTGCAGATTTGCGCTGCAGCCTTTTCGTGGCTGCTGTGCAGAGCTACAAACATGACTCTGTTCTGAGACCATTCCCAAATCGATATCTGAGAGGAGACATTAAGGATTTTGATGAGCTGCAAAAAGATGTGAGCTCCCTGCCAAGTGTAAGGGACCTGGTCCACCTAGGATCTGGAGAGGGAGACCATCATCTGGCTCTAGTGCATTGGGCACTGTCCTCCAAAAGTTTTTCTGTGAAAACCATCCAAAAAGATGAGtgGGCTAGACTTAGCCAGCTGACACAAAACACAGAGATCTCCTCTCCTGTGCCAGACTTTCTTTTTGAGTTAGAGTACTGTGAACAGATGAACTCCAAATTTGAGAAGATAAGGGCTGGACGGGAAGTTATCTATGCATTCCACGGTAGCAGACTGGAGAACTTTCATTCCATTTTACACAATGGTTTACACTGCCATCTGAATAAGaCATCACTGTTTGGGGAAGGCACATATCTCACCAGTGACCTTAGCATGGCTCTTCTTTATAGTCCTCATGGAAATGGATGGCGTGAGAGTGTCCTTGGGCCGTTGTTAAGCTGCATTGCCCTGTGTGAGATCATTGATCACCCAGATGTTAAGTGTCAGGTGAAAAAGAAAGACTCTGAGAGCCTCGACCGCCAGCGTTTGAGAGCAAGAAACAGCGAGGGAGGCGACGTGCCTGAGAAATACTTTGTGGTCACCAATAATGAACTGCTGAGAGTGAAGTATTTGCTGGTGTACTCACAGAAACGTTACAGAACCAGgCAAACTCAACGAACGTCATGGCTGGTCAGACACCATTTTGCCATTATGATGGGTCTTTATCTTCTGCTTCTCATATTCATTGGTGCCTTCAACTCTACTAGTTTCCAGTCATTTTGGCATAGAATGTTCCGGTGATCCAAACTACTTGCATCACAATTGCCTCCTTTCCAAAGTGCCTTTTTCCTGTGGTTCAAACACCAACAAAAGACAGTTCTCAGGAATCTCTGAACATTTTATTCCATCCTCTGGTGTGTACTAGTTACACTGCAGGCACCAGTCATTTCATTATTGATAGACAGTAGCTTTTAATACTGGGCAATTTatgcatttgtttttaaatgatgtaacATCTAATTCTTTCTGACAACTTTTATCAATGTAGGAATGAAAGCCTAGCTGCTTATGCTGTGGGCTTAGTAACACTGTGACATGTAGCGCATGAAAAGTcagatgtttgttttttctagtgTTTTCTACTTGTGTAGAACTGTGGGATCATTTATTGTAACTGTACAACCAAACTATGAGGGATAAACTGTTGCCCTGTCTGCCTTTTTAGTGACAATAATGTACTTGGTTTTGGTCTTAGACATTGTCAAAACCAATTGCTGCTTATTCTATTGAATCTTAGGATAATGTAAATGGGTCACCGCTATCACTTTACTGTTTATAGGGTGGACAATCATCTAGAACTTGTTTATTTTGAATGGAGCCCTTATGTTGGAGCTGTAAGAATCCataattttctttaaatatctcATGAAAACATTGTGCAAGTGTAGCGATTTGCACTGTTTGTGGTCAGGAACTTTTATGACTCTGGAGCAGACCTTTTTGGCCAGTTTAGTAAGTAACTAGCAAGTCCAGATGTATTGATgcaaattatgttttattaatgttatgttttatggAGCCATAGTACTTAAATGCAATGAAATAACAGTTAAATATATTGCtaagtttaaatatataaaaaaaaaaataataacatccTAAAACTAGAATGGTGGGACAAATGTCAGGCATGCTGAGTTCAGTTAATGACATGCTGTGAAGAATAACAAAACTTTTTAACAATGTTATTTCGTAAATATATCAAATACTTAAGTACATATAAAATCATTCtcaattacattttcttttattttaattttaaaagtatgcaTTGTGTTCATGATTATGGACCTGTTGTCGTTCTGTGAATAGGCCATAAACTAGTTTACACTTGAATCAGTTGAATCAATAAACACATATCCTTCACACATTTCA

Function

symbol description
parp16 Predicted to enable NAD+ ADP-ribosyltransferase activity; kinase binding activity; and protein serine/threonine kinase activator activity. Predicted to be involved in endoplasmic reticulum unfolded protein response and protein ADP-ribosylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum tubular network and nuclear envelope. Is expressed in several structures, including liver; median fin fold; presumptive ectoderm; vasculature; and ventral mesoderm. Orthologous to human PARP16 (poly(ADP-ribose) polymerase family member 16).

NR:

description
PREDICTED: mono [ADP-ribose] polymerase PARP16

GO:

id name namespace
GO:0003950 NAD+ ADP-ribosyltransferase activity molecular_function

KEGG:

id description
K00774 PARP16; poly [ADP-ribose] polymerase 16

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007246536.3 True 2305 mRNA 0.41 7 18461375 18468113

Neighbor

gene id symbol gene type direction distance location
LOC103028541 apba2,LOC108436900,LOC105892347,LOC106584731,LOC106530680,LOC103462423 coding downstream 12820 18430338 ~ 18448555 (-)
duox1 duox1,LOC108436899,LOC107712499,LOC106561775 coding downstream 35281 18406321 ~ 18426094 (-)
LOC103025779 tjp1b,LOC108414298,LOC107589322 coding downstream 85721 18228352 ~ 18375654 (-)
galk2 galk2,LOC107688931,LOC107557993,LOC107589326 coding downstream 272976 18177682 ~ 18188399 (-)
sqor sqrdl,LOC107662477,LOC107688928,LOC107589329,LOC105892492,LOC103363827 coding downstream 319683 18125787 ~ 18141692 (-)
dld dld coding upstream 151023 18619136 ~ 18625195 (-)
LOC103034129 NA coding upstream 502299 18970412 ~ 18973313 (-)
LOC103027908 NA coding upstream 507195 18975308 ~ 18977165 (-)
LOC103028224 NA coding upstream 510735 18978848 ~ 18987058 (-)
LOC103035727 hyal6,LOC108436892,LOC107698319,LOC107752305,LOC105896038,LOC107573512,LOC106561028 coding upstream 555577 19023690 ~ 19046218 (-)
G74640 NA non-coding downstream 110439 18350631 ~ 18350936 (-)
G74599 slc27a2,LOC108414297 non-coding downstream 233699 18218289 ~ 18227676 (-)
G74556 tpm1,LOC108441842 non-coding downstream 595237 17845126 ~ 17866138 (-)
G74447 NA non-coding downstream 647410 17805335 ~ 17813965 (-)
G74407 NA non-coding downstream 1206086 17254917 ~ 17255289 (-)
G74704 lamb1,lamb1a,LOC107662456,LOC107739090,LOC107595246 non-coding upstream 133864 18601977 ~ 18607745 (-)
G74711 lamb1 non-coding upstream 145263 18613376 ~ 18614926 (-)
G74716 NA non-coding upstream 160948 18629061 ~ 18629405 (-)
G74735 NA non-coding upstream 169150 18637263 ~ 18640185 (-)
G74740 NA non-coding upstream 181326 18649439 ~ 18649771 (-)
G74591 isl2,LOC105022634 other downstream 431628 17982747 ~ 18029747 (-)
nrg4 NA other downstream 575980 17877026 ~ 17885395 (-)
LOC103041134 rps27l,zgc:136826,LOC107752326,LOC107598918,LOC101156845 other downstream 1991052 16467089 ~ 16470323 (-)
LOC103046265 pkp3 other downstream 2680697 15758303 ~ 15780678 (-)
LOC103040324 NA other downstream 3046762 15381329 ~ 15414613 (-)
G74791 NA other upstream 471061 18939174 ~ 18940464 (-)
LOC103034453 LOC108436916,LOC107753633,LOC107659484,LOC107573489,LOC107752304,LOC108181664,LOC107598834 other upstream 524555 18992668 ~ 19008366 (-)
G74838 wasl,LOC105896696,LOC108275301 other upstream 602825 19070938 ~ 19072888 (-)
G75100 LOC108436948,LOC108275266 other upstream 1391581 19859694 ~ 19865982 (-)
G75207 api5,LOC107696269,LOC107753602 other upstream 1559049 20027162 ~ 20032027 (-)

Expression


Co-expression Network