LOC103030240 (LOC103030240,LOC108436888)


Basic Information

Item Value
gene id LOC103030240
gene name LOC103030240,LOC108436888
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 18484454 ~ 18496455 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007246539.3
gagagagagagtgaaggaaaaaagagagtgagggagagagagagctgcttgGAGCTGTTtgagctggaactgctggagaTGAGAGATTCACTCACTGTACAGCACAGAGCACAGACGGAGCGCAGCAgaagcacacacactctcagcagcctcttctgGACGCCGGAGCTCGGACTTGGACAGCTTGGAGAATGTCAGCCCTGGTGCCCTGCCACAGCTCTGAGAGGACGGAGGCTGGAAGTGATGTTTCTCTGAAAgtgtagcagcagcagcctgtttggaagtgagcgttgtgatggTTTCTACCCAGAATCTGTGATGTTTTGCAAGGAGGCAGTTCATATGGGACACACTCAGCCTCTCtcagcctgtctctctctctctctctttttttctctgctggATTCCGTTTGTGGCTTCATCTCCACGCTTTCAATCTACTTGAAGAAGCATGACTGGATATGTAGCGGCTGAATTGCTGTGAGATGGGTTTTCAGCTCCTGCTTGCAGGAAAATATATTCACTGGTACAAGTCTGTGAGTACAAAGACTGCATAAGGTGCTGAACCAAGCGTTACTTTTGGTGCTGCTCTCAGTCCAACCAGAAGACCCCAAAACTAATTTCTCTTCTTACAGGCTTAGCCAAATGGGAACTTTTGTCAGTTATGCTGATTTCTTATCACTTATCTCTCtctgatttaaaatgatttaaacatcTCATCCAGGATTATCATCACTTAAACTGCATGACTATTTTTTAGACTCACCTTAAAAGGCCTTATCTGAGGACTTAttcattaaacaatatatatcattcattaattactgcaaAACATCCATGCTGTAGAAATGGAGGAGTGAGGAGATTCACACTTTTTGGGCAAATAATATCCTTTACAAGACTGCCTATGTTAccacaaacaaaagaaacagtgtaaatgtactcTCAAATGCACAAGACCAGGTCGAGTAGTGTCCCTTAGAAGCCTGAAAATCTACTAGAAAGGAAGAAAggagtacaaatctgtactttaaCAAAAGGTTCTGAAGACATACCCTTAAGGTTACCACCCCAGGGACAAGAGGCGTACCACCACAATGACAGTTTTGTATCTATTTTTGCTAAGAGTGTCTTCcagtgctgaaaaatgaaaaatatccGTATCTATGActgccaagccaagccaagttATGTAAGGGGTCCCATGCTGGAACCTGGTTACATCTGACTATGTTCATAATGACCACGGCTCACAACTGGATGGCCACTGTGACTCCAGGGGGCTTCAGACATGAAGCACAGTACCCTCTGCCCTGCAGGCTGCTGGTGTCTCTGTGTCCAGGATGTTCCAGAGCACTCTGCTAGTACCCCTAAACCTGACTGACGGTCCGGATCGCAGGCAGTGCATCCGCAGCCACATCAGGATGGTAATGGAACAGTTGGAGGAGGTTCTGATTGAACTGAAGGATGTGGCAAGAGAGCTCCGTGAgGTAGTGGCTCAAATTGACAAACTGACAGCTGGCATTGATCTGGACGCAGAAGACGATGCTGAGGAGGACAAACTGACCCTGGCttgcagcagtagcagcagcgaGAGAGCCCTGGGGGAACTTTTCAAAGCTGAGGCTTTTTCTAATACCTGCGACCTGCATCATTTACTGTACAACCCGCTCCTGGACACTGCTAAGAGACAAGATACAGCCCTGCATCGGCGGAGCTGCGGGGACTTACCTGCTCTAAATGGACCTATGAAGGCCCCCTACAGTCCAAAAGCTTCTTGGCTCTTTGGCAGTGGGGAGAAAATCCACCACTGTGATAAAGCATCGTATCACGCGTTATGCTGTGACGATGACGACTTTGATGAAGAGAGTGGAGGCAGGAGATCCTCCAGATTCTCCTCCAATGACTCTGTGTTTTCCTCTTCTCCACCGCGGCCTCTGAGAGTCGAGGCCTTGACACCCCGATCTGCACGAAAATGTCACCTCAGCCCAGGCTCGAAGAAAAAAGCTCTGCGGAGCTGCAGCACTCAAACTGTTTCAGATAAGAGCACACAAACTCCATTCCCATACAGCCCTGCCCGGCAAAGAGCTTCAAGTGACTACAAGCactaaaaaaattcaaacagtccACTGCTCACCTGATACCACTTTTAAACTGTGCAagacatatttataaaaaaaagatgtaatgTTAAATATAGTAGAAATGCTTAATTGCACATTGACTTCTTGCTAATAAAATCATGCACTTGGCTGTTAAGTTTTTGTAGCTGCAGTGTTAAAGATGTAGCAGCTTTCCTTTGGTTGAAATACAATATCCCATTTCTGAAGTAATAAATCTCCTCTGGCCCCCC

Function

NR:

description
UPF0583 protein C15orf59 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007246539.3 True 2353 mRNA 0.46 2 18484454 18496455

Neighbor

gene id symbol gene type direction distance location
LOC103026409 LOC108436903 coding upstream 25307 18456593 ~ 18459147 (+)
LOC103028854 eif3j,LOC107688938,LOC107739069,LOC108275014 coding upstream 31642 18448308 ~ 18452812 (+)
LOC103028223 duoxa2,LOC103028223 coding upstream 53826 18426864 ~ 18430628 (+)
LOC103027907 slc27a2,LOC108414297 coding upstream 256708 18214109 ~ 18227746 (+)
cep152 NA coding upstream 272768 18196150 ~ 18211686 (+)
ubl7 ubl7a,ubl7,LOC108436908,LOC108274434,LOC107703185 coding downstream 10151 18506606 ~ 18513315 (+)
LOC103030871 NA coding downstream 18292 18514747 ~ 18524175 (+)
LOC103026700 lamb4 coding downstream 39419 18535874 ~ 18575367 (+)
LOC103026996 lamb1,lamb1a,LOC107662456,LOC107595246 coding downstream 81334 18577789 ~ 18615121 (+)
LOC103027288 NA coding downstream 135848 18632303 ~ 18634947 (+)
G74654 NA non-coding upstream 21818 18461444 ~ 18462636 (+)
G74535 LOC108436883 non-coding upstream 108915 18371716 ~ 18375539 (+)
G74510 NA non-coding upstream 271093 18211912 ~ 18213361 (+)
G74477 NA non-coding upstream 302349 18115583 ~ 18182105 (+)
G74668 NA non-coding downstream 37353 18533808 ~ 18534130 (+)
G74672 NA non-coding downstream 128616 18625071 ~ 18626410 (+)
G74714 NA non-coding downstream 131194 18627649 ~ 18628028 (+)
LOC111193102 NA non-coding downstream 206266 18702721 ~ 18703887 (+)
G74770 NA non-coding downstream 461183 18957638 ~ 18970866 (+)
LOC103029914 scamp5,scamp5a,LOC108436905,LOC103363822,LOC107395508,LOC107703195 other upstream 5109 18470704 ~ 18479345 (+)
G74649 NA other upstream 29257 18454851 ~ 18455197 (+)
G74169 NA other upstream 2196125 16286676 ~ 16288329 (+)
svip svip other upstream 2906921 15572302 ~ 15577533 (+)
rpgrip1l rpgrip1l other upstream 3563451 14891534 ~ 14921003 (+)
G74832 NA other downstream 586361 19082816 ~ 19085556 (+)
cadps2 NA other downstream 643694 19140149 ~ 19322775 (+)
tmem17 tmem17,znf774,LOC107678976,LOC107753710 other downstream 963503 19459958 ~ 19462187 (+)
LOC103044129 NA other downstream 1030757 19527212 ~ 19537617 (+)
LOC103028745 NA other downstream 1707164 20203619 ~ 20207955 (+)

Expression


Co-expression Network