ubl7 (ubl7a,ubl7,LOC108436908,LOC108274434,LOC107703185)


Basic Information

Item Value
gene id ubl7
gene name ubl7a,ubl7,LOC108436908,LOC108274434,LOC107703185
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 18506606 ~ 18513315 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007246540.3
CTGACGTTCAGCTGATTACGTCAGTCCGCAGAAACGAAAACAGAAGGATAGTGGGGTCgcctgtgtgtgagtgggttgCTGGTTGTTCTTTAGTGAGGCTGATATCTGTGTAGTTTTAAGGTTTAACTGATTTAAAGGCTGGGTTTTACTGTTATACAGCGCTATTAGGAAAACCGCGGTAAAGAGCATCTAGTCCAGGTTCAGAGTCAGCCATCTCTGCGGGAAGTGCCTGCTCACCCTGGAGGAGCAGTACTGCAGCAGTACTGGAGAGTTCTGTTCATTCATTAGGCTGCTGAAGTCCAGCATGGCTATTCCTGAGTGGCGCCTGTCCCTGAAGCTGATGGACCACCCCTCCCTCCCGAAGTCCGTCCTCCAGTTTCCAGAGACGGAGCCTGGAGATGTTCCACCTGGAGAGTATCGAGTGGCGACTCTCAAACAGCTCGTCTCAGCACAGCTACCAGACGCCATACCTGACCCAGAACTTATAGaGCTGGTGTACTGTGGCAGAAAGCTGAGGGATGAACTCACCCTAGACTCCTACGGGATCCAGTCAGGATCTACTGTACACATCCTGAGGAAGTCATGGCCAGAACCTGAGATCCATCCTGAGCCTGTTGACAGAGTAACAGCAGCAAGAGAATTTCGTGTCCTTCAGGCAGCTCTTCACACAAGCACAGCCTACAGAGATTCGgtttttaaaatgttgaacaACAAGGAGTCTCTGGATCAGATAATTGTGGCCACACCTGGTTTGAGTACTGATCCAATGGCTCTGGGTGTCCTTCAAGACAAGGAACTCTTTGTGCAATTCACAGATCCCAACATGCTTGACACGTTGATTAACTCTCACCCAGCACTGGTTAATGCCATTATTCTGGTGCTGCATTCAGTAGCTGGCAGTGTGCCCAACCAGCAGAGTGCCAGCTCCTCCAGAAATGTGTCCTCCAGCTCCTACAGTGACATGCCAGGAGGATTTCTCTTCGAAGGCATGTCTGACGATGAGGAGGAATTCCAATCGGGGAACCGGAGTGGACCATCCTCCAGTTCTACAGGCTCTTCGGGGTTGAGGCCTGCTACATTAGGCTACAGTGGGGCAGTTGGACCTAGACCAATCACCCAGAGTGAACTTGCAACAGCCCTAGCTCTAGCCAGCACTCCTGAAAGCAGTGCTGTTACACCCACCATAGGAAACCAGGGAGCTTCTTCAGGGGTTTCCCCTATCCCAGCCGGAACCCCTATAACAAATGACCTGTTCAACCAGGCCCTGCAGCAAGCCTTACAGGTGTCGAGCATATCGTCCCTTCAGAGTCAGTGGCAATCCCAGCTCCAGCAGTTGCGGGACATGGGGATTCAGGACGAGGAGCTGATCCTGCGAGCCCTGCAGGCCACTGGGGGAGATATTCAAGCTGCATTGGAGCTCATTTTTGCAGGAGGAGCCCCATGAGTTTCTGTACTTCACACCTACTAGAAAAACATAGGCACTGTTGTAATCAGGCATTTTCACAGAAATAACTTGATGCTGAGGATCTGAAGGAGTTACTGAATATTACAGTTTACATCATTTTTATATGTTGacttctttaaactttaaatcacAAGCTATTTGCACTTTTGCCTGAAATGTTAACGGagaggtttttatttattttaatgtaaacatttgtCTTCTTAATTCTGGCAGATGAGCCACTGATGTCTGTTGTGATGGTTCCTTACTGTGGATTTTACCAGCAATACCATCTTCAGAgtacatttgatttaatttgatgttttaatgCTAAAGTAACTATGGATATGTTTTGTGGCAAGAGACATGATTACAGATATTAAATGATGAATGATGGTCTGTATATTACACACctaaatatatgttttctttttgaaccaaaa

Function

symbol description
ubl7a Predicted to enable polyubiquitin modification-dependent protein binding activity. Predicted to be involved in ubiquitin-dependent protein catabolic process. Predicted to be active in cytosol. Orthologous to human UBL7 (ubiquitin like 7).
ubl7 Predicted to enable polyubiquitin modification-dependent protein binding activity. Predicted to be involved in ubiquitin-dependent protein catabolic process. Predicted to be active in cytosol.

NR:

description
PREDICTED: ubiquitin-like protein 7

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007246540.3 True 1890 mRNA 0.47 10 18506606 18513315

Neighbor

gene id symbol gene type direction distance location
LOC103030240 LOC103030240,LOC108436888 coding upstream 10151 18484454 ~ 18496455 (+)
LOC103026409 LOC108436903 coding upstream 47459 18456593 ~ 18459147 (+)
LOC103028854 eif3j,LOC107688938,LOC107739069,LOC108275014 coding upstream 53794 18448308 ~ 18452812 (+)
LOC103028223 duoxa2,LOC103028223 coding upstream 75978 18426864 ~ 18430628 (+)
LOC103027907 slc27a2,LOC108414297 coding upstream 278860 18214109 ~ 18227746 (+)
LOC103030871 NA coding downstream 1432 18514747 ~ 18524175 (+)
LOC103026700 lamb4 coding downstream 22559 18535874 ~ 18575367 (+)
LOC103026996 lamb1,lamb1a,LOC107662456,LOC107595246 coding downstream 64474 18577789 ~ 18615121 (+)
LOC103027288 NA coding downstream 118988 18632303 ~ 18634947 (+)
LOC103032021 NA coding downstream 123929 18637244 ~ 18644079 (+)
G74654 NA non-coding upstream 43970 18461444 ~ 18462636 (+)
G74535 LOC108436883 non-coding upstream 131067 18371716 ~ 18375539 (+)
G74510 NA non-coding upstream 293245 18211912 ~ 18213361 (+)
G74479 NA non-coding upstream 326836 18177695 ~ 18179770 (+)
G74494 ctdspl2a,LOC108411888,LOC108275364,LOC107557990,LOC107739078,LOC107662443,LOC107589331 non-coding upstream 382771 18120609 ~ 18123835 (+)
G74668 NA non-coding downstream 20493 18533808 ~ 18534130 (+)
G74672 NA non-coding downstream 111756 18625071 ~ 18626410 (+)
G74714 NA non-coding downstream 114334 18627649 ~ 18628028 (+)
LOC111193102 NA non-coding downstream 189406 18702721 ~ 18703887 (+)
G74770 NA non-coding downstream 444323 18957638 ~ 18970866 (+)
LOC103029914 scamp5,scamp5a,LOC108436905,LOC103363822,LOC107395508,LOC107703195 other upstream 27261 18470704 ~ 18479345 (+)
G74649 NA other upstream 51409 18454851 ~ 18455197 (+)
G74169 NA other upstream 2218277 16286676 ~ 16288329 (+)
svip svip other upstream 2929073 15572302 ~ 15577533 (+)
rpgrip1l rpgrip1l other upstream 3585603 14891534 ~ 14921003 (+)
G74832 NA other downstream 569501 19082816 ~ 19085556 (+)
cadps2 NA other downstream 626834 19140149 ~ 19322775 (+)
tmem17 tmem17,znf774,LOC107678976,LOC107753710 other downstream 946643 19459958 ~ 19462187 (+)
LOC103044129 NA other downstream 1013897 19527212 ~ 19537617 (+)
LOC103028745 NA other downstream 1690304 20203619 ~ 20207955 (+)

Expression


Co-expression Network