LOC103030871


Basic Information

Item Value
gene id LOC103030871
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 18514747 ~ 18524175 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007246541.3
TAACTAATACACTGGGGATTAAAGTCGGTCTTATGGTTCCGCCACTGGTTTACGGCGTGTCTACACACGGTACagcagcgctgtgtgtgtgtgtgtgcgcgcgcgtgtgtgtttgagagtgtgagagagagtgtgagtatgGTGAGCGGTTTATTTATTAACCTCAGCTCTGAGATAAAGTGAAGTTTTAGAGGAGCAGAGCTGAACTCAGTTCAGAGAGACTCTTTCAGCTCCTGGCGTTAGAAAGAAGTTGGTTTGTTCTGTGCTTCACTCCAGCAGTAGAATGGCCGGGATCAGACACTGTCCTTTACTCTCTGTGCGTCCTCTCCGCTGTCTGGTGGATGAGAAGTTCGAGGTAGTTGTGCAGTTTTTGCTGCCCAGTCAGCCGGTGACTCTGCATGCACTGCTGCAGTCGGAGGACGGGGACTTCTGGGAGGCGTTTGGTCATTACAAGGGTGATGCATCCGGATCTGTCAAAGTGTCTGAAGATGTCAGTCTTGGTGGATCGTATGATGGACTTGAGCCCATGGGCCTGCTGTGGAGTATGAGACCAATTCCTGGAAGCAGAAAAGGCCTCAGatttagaAACAAGGACGTCTTCAAGCCCATTGAGGTGCACATATCTGTGTATGAAGGCCATCTAACCAAGTGGTTCAAAGAAAAACAAGCTCTAGCCTCTGTTGTAGCTGAGCGATGGTACAGCAGTCCTGGAGTGCAGAGGATTGATGTCAGGGAGAAAGGGTTAAAGGGGACCCTTTTCATACCTCCAGGTCCTGGCCCGTTCCCTGCTGTGCTGGACCTCTGGGGTGGAGGAGGTGGGCTGGTGGAATATCGCTCTGCTCTGCTGGCCTCTCATGGCTACATCACATTAACTCTGGAGTACATTGGACTTAAGGATGCTAGTGGAACACCACAAAATGTGGACAATGACTACTTTGAGGCTGCCTTTAGTTTGTTGAAGCAACATCCGCAGGTGTGTCCTGACAGAATAGCCATGATGGGCTTGTCGTTTGGTGTGTCTGTGACTCTTGGCATGGCAGCGTACTCCTCAGAGATCAATCCcaaatgtgtagtgtgtgttagtggaaGCCACATTATGCCTGTAAATGGATCATTGGCTGATGTCTTTAAAGAGATCAAAAAgaatgtCAAGAACACTCGCTATGATGAAGAGCGGAGAATCATTTGGCGAGATCTGCTGCTGCCGATACCAGACGACCCTTCAAAGAAAGTTGAAATGGGTCTTATCCAATGCCCTATTTTACTGATTGTTGGTGAGGATGATCAAAATTGGGCAGCAGCAGAATCTGCAGAAGATATGAAGAAGATGATGGAGCAAGCTGGGAATAGTCACCTGTTGACTGTGCTTTCATACCCCCACACTGGTCATCTCATTGAGCCTCCCTACTGCCCTCATGTCCGATCCAGCAACTTCAAATTGATAGAGGCAAAGACTACAGtggtggtggtgtggggaGGACAAATGGTACCACACAGTAAAGCTCAGGAAGATTCCTGGCAAAAAACCCTGGCCTTTCTGGAGCAGCATCTCTACACCCATGACACTGTAGCATCCAAATCCAACTAGTGAAGAGAAAACATGCCATATATTGCACTGTAAAAAAGTAGCTTACAAATTAAGGATctccatcatttttttcttttagacaGCTTCATGACAAAACCGCCTTTAGGTCGTACTGCTACTAATCacctatgattttttttttattataattttatttctaatttttcccattttctccccaatttacacagccaattacccaacccactcagtaTGACTCcttctatcactagtaatgcaccaacacaccaggagggtgaagactaacacatgcttcctccgatacatgtggagccagccaccacttctttttcgagctgctgctgatgcagcattgccgagcagccagttttagctttagaaaaaatatatttcattttcttaACCTACACATTTCAAGACATTACATTACCAATCAAAATGTATCTTTTACAGACAATCAAACAGTAGCTTAACCTCTgccatcacatcacatcagaaTATAGATTCAGCACACTGGCATGGCAGCACTTTAGCTACAGAGGTAAAGGTTGTTTTAACTCTTAATAATGACTATACATTTCTTTCTACACAAAAGTTTCTAAATGATTGATCATTACAGTGGACAGTGTATTATTCAGGCTGGTTCTTTTTGTACTGCTTGTTCTCTGTAATTATTGTATTACAAACAAATGGCACACCAGGTAGAATAGGCTGAACAAGATCTAAAGTACTTGGATTACTTTACAGAATTAACAGAGGAACAGCTTGTAaagatgtgaaaaaaatattttaataggaATTTTGaatttaatgattattattttgtaattacatgttgGTCTTCAGTTGACTTAtgttaaatatagtttaatttttCTTGTTAATGattaacattttacataaagTTGGAGATCATACAGAGTTCATACAGAGTACTGACACAGTTCATGGTTCATGTTTATGACCCACAATGCAAAGGTCAGTGACACAAGATTGTAGCTCTGGGTGTAATGACCTCAAATCAGTATCACAATTACggttcataaaataaatatttaatgaatgacacacacagcttttttttttggaggaagCTGCTGGAGTTGATCAGTTGGCTCAAATTCTTCTGTAGGTTGCTTTCATGAACACACACAGTGGGAAAATCTTTAAcagaatttaaaaacaaaagagtAATCGATATGGGCAAGAATAAAGAATACAGGGGTCCTGAAAGTCTCCCAGCCCTACAAAAGCGGCATTAATATGAAGCGGCAAAAGCTTCTTGAATGCTAATAGCATGTGTGTAAAATCTTCAGCCTGCTAAACATGCAATTCTACATGTCTCTAACATGCTCACCATCTGAAAAGCCTCCatattttgttaataaaattGTGTCCTGCGACTTTTTACTCGCCCTGTAACCTGCACACCttttataaaaatctaaattgtg
>XM_007246542.3
TTAACTAATACACTGGGGATTAAAGTCGGTCTTATGGTTCCGCCACTGGTTTACGGCGTGTCTACACACGGTACagcagcgctgtgtgtgtgtgtgtgcgcgcgcgtgtgtgtttgagagtgtgagagagagtgtgagtatgGTGAGCGGTTTATTTATTAACCTCAGCTCTGAGATAAAGTGAAGTTTTAGAGGAGCAGAGCTGAACTCAGTTCAGAGAGACTCTTTCAGCTCCTGGCGCAGTAGAATGGCCGGGATCAGACACTGTCCTTTACTCTCTGTGCGTCCTCTCCGCTGTCTGGTGGATGAGAAGTTCGAGGTAGTTGTGCAGTTTTTGCTGCCCAGTCAGCCGGTGACTCTGCATGCACTGCTGCAGTCGGAGGACGGGGACTTCTGGGAGGCGTTTGGTCATTACAAGGGTGATGCATCCGGATCTGTCAAAGTGTCTGAAGATGTCAGTCTTGGTGGATCGTATGATGGACTTGAGCCCATGGGCCTGCTGTGGAGTATGAGACCAATTCCTGGAAGCAGAAAAGGCCTCAGatttagaAACAAGGACGTCTTCAAGCCCATTGAGGTGCACATATCTGTGTATGAAGGCCATCTAACCAAGTGGTTCAAAGAAAAACAAGCTCTAGCCTCTGTTGTAGCTGAGCGATGGTACAGCAGTCCTGGAGTGCAGAGGATTGATGTCAGGGAGAAAGGGTTAAAGGGGACCCTTTTCATACCTCCAGGTCCTGGCCCGTTCCCTGCTGTGCTGGACCTCTGGGGTGGAGGAGGTGGGCTGGTGGAATATCGCTCTGCTCTGCTGGCCTCTCATGGCTACATCACATTAACTCTGGAGTACATTGGACTTAAGGATGCTAGTGGAACACCACAAAATGTGGACAATGACTACTTTGAGGCTGCCTTTAGTTTGTTGAAGCAACATCCGCAGGTGTGTCCTGACAGAATAGCCATGATGGGCTTGTCGTTTGGTGTGTCTGTGACTCTTGGCATGGCAGCGTACTCCTCAGAGATCAATCCcaaatgtgtagtgtgtgttagtggaaGCCACATTATGCCTGTAAATGGATCATTGGCTGATGTCTTTAAAGAGATCAAAAAgaatgtCAAGAACACTCGCTATGATGAAGAGCGGAGAATCATTTGGCGAGATCTGCTGCTGCCGATACCAGACGACCCTTCAAAGAAAGTTGAAATGGGTCTTATCCAATGCCCTATTTTACTGATTGTTGGTGAGGATGATCAAAATTGGGCAGCAGCAGAATCTGCAGAAGATATGAAGAAGATGATGGAGCAAGCTGGGAATAGTCACCTGTTGACTGTGCTTTCATACCCCCACACTGGTCATCTCATTGAGCCTCCCTACTGCCCTCATGTCCGATCCAGCAACTTCAAATTGATAGAGGCAAAGACTACAGtggtggtggtgtggggaGGACAAATGGTACCACACAGTAAAGCTCAGGAAGATTCCTGGCAAAAAACCCTGGCCTTTCTGGAGCAGCATCTCTACACCCATGACACTGTAGCATCCAAATCCAACTAGTGAAGAGAAAACATGCCATATATTGCACTGTAAAAAAGTAGCTTACAAATTAAGGATctccatcatttttttcttttagacaGCTTCATGACAAAACCGCCTTTAGGTCGTACTGCTACTAATCacctatgattttttttttattataattttatttctaatttttcccattttctccccaatttacacagccaattacccaacccactcagtaTGACTCcttctatcactagtaatgcaccaacacaccaggagggtgaagactaacacatgcttcctccgatacatgtggagccagccaccacttctttttcgagctgctgctgatgcagcattgccgagcagccagttttagctttagaaaaaatatatttcattttcttaACCTACACATTTCAAGACATTACATTACCAATCAAAATGTATCTTTTACAGACAATCAAACAGTAGCTTAACCTCTgccatcacatcacatcagaaTATAGATTCAGCACACTGGCATGGCAGCACTTTAGCTACAGAGGTAAAGGTTGTTTTAACTCTTAATAATGACTATACATTTCTTTCTACACAAAAGTTTCTAAATGATTGATCATTACAGTGGACAGTGTATTATTCAGGCTGGTTCTTTTTGTACTGCTTGTTCTCTGTAATTATTGTATTACAAACAAATGGCACACCAGGTAGAATAGGCTGAACAAGATCTAAAGTACTTGGATTACTTTACAGAATTAACAGAGGAACAGCTTGTAaagatgtgaaaaaaatattttaataggaATTTTGaatttaatgattattattttgtaattacatgttgGTCTTCAGTTGACTTAtgttaaatatagtttaatttttCTTGTTAATGattaacattttacataaagTTGGAGATCATACAGAGTTCATACAGAGTACTGACACAGTTCATGGTTCATGTTTATGACCCACAATGCAAAGGTCAGTGACACAAGATTGTAGCTCTGGGTGTAATGACCTCAAATCAGTATCACAATTACggttcataaaataaatatttaatgaatgacacacacagcttttttttttggaggaagCTGCTGGAGTTGATCAGTTGGCTCAAATTCTTCTGTAGGTTGCTTTCATGAACACACACAGTGGGAAAATCTTTAAcagaatttaaaaacaaaagagtAATCGATATGGGCAAGAATAAAGAATACAGGGGTCCTGAAAGTCTCCCAGCCCTACAAAAGCGGCATTAATATGAAGCGGCAAAAGCTTCTTGAATGCTAATAGCATGTGTGTAAAATCTTCAGCCTGCTAAACATGCAATTCTACATGTCTCTAACATGCTCACCATCTGAAAAGCCTCCatattttgttaataaaattGTGTCCTGCGACTTTTTACTCGCCCTGTAACCTGCACACCttttataaaaatctaaattgtg

Function

GO:

id name namespace
GO:0006637 acyl-CoA metabolic process biological_process
GO:0016790 thiolester hydrolase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007246541.3 True 3024 mRNA 0.42 11 18514748 18524175
XM_007246542.3 False 2988 mRNA 0.42 11 18514747 18524175

Neighbor

gene id symbol gene type direction distance location
ubl7 ubl7a,ubl7,LOC108436908,LOC108274434,LOC107703185 coding upstream 1432 18506606 ~ 18513315 (+)
LOC103030240 LOC103030240,LOC108436888 coding upstream 18292 18484454 ~ 18496455 (+)
LOC103026409 LOC108436903 coding upstream 55600 18456593 ~ 18459147 (+)
LOC103028854 eif3j,LOC107688938,LOC107739069,LOC108275014 coding upstream 61935 18448308 ~ 18452812 (+)
LOC103028223 duoxa2,LOC103028223 coding upstream 84119 18426864 ~ 18430628 (+)
LOC103026700 lamb4 coding downstream 11699 18535874 ~ 18575367 (+)
LOC103026996 lamb1,lamb1a,LOC107662456,LOC107595246 coding downstream 53614 18577789 ~ 18615121 (+)
LOC103027288 NA coding downstream 108128 18632303 ~ 18634947 (+)
LOC103032021 NA coding downstream 113069 18637244 ~ 18644079 (+)
LOC103032349 znf800 coding downstream 129101 18653276 ~ 18668460 (+)
G74654 NA non-coding upstream 52111 18461444 ~ 18462636 (+)
G74535 LOC108436883 non-coding upstream 139208 18371716 ~ 18375539 (+)
G74510 NA non-coding upstream 301386 18211912 ~ 18213361 (+)
G74479 NA non-coding upstream 334977 18177695 ~ 18179770 (+)
G74494 ctdspl2a,LOC108411888,LOC108275364,LOC107557990,LOC107739078,LOC107662443,LOC107589331 non-coding upstream 390912 18120609 ~ 18123835 (+)
G74668 NA non-coding downstream 9633 18533808 ~ 18534130 (+)
G74672 NA non-coding downstream 100896 18625071 ~ 18626410 (+)
G74714 NA non-coding downstream 103474 18627649 ~ 18628028 (+)
LOC111193102 NA non-coding downstream 178546 18702721 ~ 18703887 (+)
G74770 NA non-coding downstream 433463 18957638 ~ 18970866 (+)
LOC103029914 scamp5,scamp5a,LOC108436905,LOC103363822,LOC107395508,LOC107703195 other upstream 35402 18470704 ~ 18479345 (+)
G74649 NA other upstream 59550 18454851 ~ 18455197 (+)
G74169 NA other upstream 2226418 16286676 ~ 16288329 (+)
svip svip other upstream 2937214 15572302 ~ 15577533 (+)
rpgrip1l rpgrip1l other upstream 3593744 14891534 ~ 14921003 (+)
G74832 NA other downstream 558641 19082816 ~ 19085556 (+)
cadps2 NA other downstream 615974 19140149 ~ 19322775 (+)
tmem17 tmem17,znf774,LOC107678976,LOC107753710 other downstream 935783 19459958 ~ 19462187 (+)
LOC103044129 NA other downstream 1003037 19527212 ~ 19537617 (+)
LOC103028745 NA other downstream 1679444 20203619 ~ 20207955 (+)

Expression


Co-expression Network