LOC103032349 (znf800)


Basic Information

Item Value
gene id LOC103032349
gene name znf800
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 18653276 ~ 18668460 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007246546.3
TGCACAAAGGCAGCCTCCTCTCCGAGAGGGCAGCGCCAGAGAGgcgagtcacacacacactcactcatacacacactcgcgcacgcacttacacacacgcacacactcacacagagagaggCTGCACATCCACTCGGTTAATCCTCCGCCTCGCTCCGGAGTTGTCCCAGCCCAGGCCCGGACCCGAGACCCGCTGGCTTCTGGAACAAAGAACTCTGAGAGATGGAGGACAGTAGTACTGAAGTGAGCATGACCAATGACAAGTGCTGTCAGACTGAAACACCACAGCACTGCTGGTGCCAGCCAGCTGCATCCCATCAAGATGACTACGACCAAACCCAAGTGCATACTGTAGAGCCAGGAGACCCACctctactgcagcagcagctccagactTCCAAGTCAGGAATTCAACAAATCATTGAGTGCTTTCGATCAGGTACAACCCAGCTCAGGCACATGCTGTTAAAGGAAGTTGACACCATCTTTGAATGCAAACTCTGCCGAAGCCTTTTCCGTGGTCTACCTAATTTGGTCACACACAAAGAGTtctactgtttttctgcacATCCTGAGCAAGATGAATCACCTCAGCCAAACAGCCAGAACCAGGCTATCAAAGACCTTCTGGATGCAATTTATCCAAGAGAAACACAAGAGCATGTGATCGAGTTGGAGGCAATAGAGACCAACCCCAATGCTGTCTTCCAACACCTGATTCCTGAAAGTTATGAGGATGAAAATATGACTCCACCCATTGTCCAACCCCAGGTCAACTCTGGAGCAAAGAAGCAAAATCGCCGCAAGTCCGTTGTAGCCCCCAAAAAAGTTGAACAGCAGGACATGGAAGATGACATGGATTTAGTGCCTGAGACATCTTCAGATAGAGAAGACCCAAGTTCTCAAGAAAATGGCAACAATGAACAAGGCGAGAGggaagaagatgaagaggagACCACCTCTGAAATGAAGGAAACAAGGATATCCTGTTGTCTTTGTCGAAAAGAATTCAGTTCAAAGCGCAGTGTGCGTCGCCACTGCCGCAAGATGCACGGACAAAAACTGGAAGAGCTGCGGAAGTTCACGGAGACGCGCACCGTGCCCATCAGTTTACTGTCTATGGTAAAGACCAAGCGTTCAGAGGAACCTATACCAACTGCTAGCAAGAACTGCCCTGTGTGTCAGAAATCCTTTGCAACCAAGGCTAATGTCCGTCGCCACTTTGACGAGGTCCACCGGGGTTTGAAGCGAGACTGCATTACTCCTGACATTGCCACTCGGCCTGGTCAGCCCCTCTCACTTGAAGTTTCAACTCATTCCTCAAAACAACCCAGCACTTCCACAAAGCCAGAGCAACAAGAGTATAACTTGTCCACGTGTCGCTGTAGGTTGTGTAAGAGAAAATACAGTTCTGACATAATGCTGAGGAGGCATATGCGTATCGTCCATAAGGTTCATGCAGTAGAAAACGGCTCTTCTGGTAACCGTACCCTCTTTTCAAGgaaagctaaaataaaatcGGAACCTACAGATGATGTTTTTCCTGGAAAAAGTGGCCTTCCATCCAGTCCGTCACCTTCAAGTGATGCAAATAAGAGTTCTGCATCCTCTTCCTTAAAGACTAAAGTCACAGAGGACAGTGGAAACCTCCCTGTTAGCTTTGACTTTAAACGTATCTACTGCTGGCTGTGCAAGCGACAGTTCAGCTCTAGTCAGAACCTGACCAGGCACATCACTGAGCTGCACATGGATGGGAATGACAGCATCTACATCAAGTTTTATGCCTGTCCAATCTGCAGATACGAGTCCCGACGGAAGCGAGACGTCATCCGTCACATTACTGTGGTTCACAAGAAGTCCTCCCGCTACCTGGCCAAGATCATGCCGGCCCTGGAGAGTCGAGCAGTGAAAAAGCCGGCTGAGGCAGTGCTAAATAACACTGCTAAGAGGACATCTTTAAAGGAGGAAACACCTGAGATGCTCCCCATTTCAACACCCAGCATGTTTACACCGGAGCCAGAAACTCCTAATACGAGTCAGCAAGAGACTTCTGGATCCCCGATTCTGAAGAAAACTGAACCATCATTGTCCCCAATTACTCGTAAGAATTCTGCCCTTACATCACTGAACCCTGTAAAACAGGAACCTTTACAGCCTTGTAAAGTAATCAAACAAGAGAAGAAACCTCATGAACCAAAGAATCCACACATGACTCGCAGTCACAACCCTGTCAAAGGACCTCCTGTCACTAGAAGCCAGGAAACTAGTACAGAGGTGAGGGTTACAAAGAACTTCTCCCTGCATGGATGTGACATGTGCGGTCGGGCATTTGCCAAAAAGGTTTTCCTTGAGACGCACAGAAAAACCCACAGGACCAGTATTCCTACCCCATCAAGGACCCCAAAGATGCAGGGAAGGAGTACTCGGTCAAAGGCGCTGATATGATTGTTCTCTTCTGCAAGTATACATTGCACATTCTCACTGGACTGTCCTATATAAATATGGCTTCAGCAAATAAAGTGCAGCGATGTTGGAATGGACAGATTTAAACAGAGGGACTATCAGTCTTGTGTCTGATTACATACAAATCCTGAGGGAAGAACACTACAGAAAGCTCTTTCAGTTTTGTACTGCAGAGGGCGCTGTGACCAAACAAATGATCTCCAGGTAGGACGTTATCACTGGGTAGTAATGAATTACATGAAAGAATATGTAATTTGAGAATTTTGAGTTAGTGAGTAGACTTTTTACTTGAGTATATTTGCAGCGAATATACTTATGCTTATAAATTGTCACTCGCCTGTagatgctttttttaaaaaaaaaaaaaactttgtgttTGATGCATTGTTCTAGTCGGTCACATCTCAACTTTAACAATAGAACGGTAATCTTTCATAAACAGCTGAAAGATAAAAAGGTTTCAGCTAAAAGCCTCCATTTTGACATAAATGCCTGCGGAACTGTGGAGCTGGACATCAATTGATGCCTCAGAATGAAACTGATCTCATAAATCAGAGTAAGTTCTTGAGTAGTCCGGAGTAGTCTTTTGTAgcctactgtatttttttactcttaCTCCATTGTTTTTGAAGAGCTGTTTGAGTTGTTGATGTTTTGAAGTAGGCTAATAGTACTTTGAGTATAATTTTCAGTTAGTCACCACATctttgacttctattgaaatttagattatttagaAATATCATCTTTGTGAACTGATCTGTTTAAAAATGAAGTGAGCAATGTTTTCCCTGAAACACATAAACGGCAGGAGGGATGGATACGTTGTGTGTATTTGGTTAACCTACCTGCATCTACTTTTTACTATTAAATATACAAGTTTACGAAAcctaaatatttgtttaattcaaCTATACTGTTCACAATTCTCGAGATTGATGACTATTTTCTCATAAGCTCTTATTTAAGAAATTGCATAAATCACTTTTCTTTCTAAATGTAACCAAGAAGGAGTTTTTACTTACGTTAAAACATGAATTCATCTCTTGCCATTCCTCTATGAATGAAAAGGCTGCTAAACCTATAGCATTTTACCTACTGTATGTGCTCTGATTTTTGCTGCCCTTTAAGTCTGTGCTGCTCAGGATGTGCTAAGGCAAGATTGTTTTGTAAAATTATAACTCTTATGTTAATCTCTCATTAGAGGTTGCAACTGTGACCAAAATGTTAATGGATACTACTGCACCAGTTTTGTATAGTGTTGTCATTGCTAGCTAACAACAAATTTACCTATATATCTAGACCTAAAGATGACCTATGTCAACTTTTAGTATGTAATGAAGAATTACAGGGTCACTTGGATGGGTTTAATGTTGGGTGAAAATCTTATCcaacaatcagccataacataaAAACCACTTGCCTAacattttacatgtttacatttacatgtgACATCTTTATGAATGCCAGAATCCATGATTTCCCAGTAAACCTTTACACAGAGAATTACCCCCACTGCCTCTTCTGGCTTGCCTTCTTTTCACAGTGCACCCTGATGCCATCTCTTGTCTTGGTAAGTGGTAAACATGCACCTGGGCTTGCAGAATTCATAAAAGCCACCTTCTTCCATTGCTCAATAGTCCAATGGTGATGCTCACGGTTATGCAGTCCCACTGCATAAGATTTtaaccacatgcatttacatttGGTAGTCAAATTTGTCTCCTGTTTGCCCCTTTTCCTGCAAACAATAATACGTCACCAAATATCggtttaaaatattgaaatgtaATTCCTATATCATTGTGCATTCCTATCTGTGTTCTGAACTTTCTAGAATAGATAGCATAACTTTTTTAGCGTattgttctaaaaaaaagtttttttttctgtgaaataAAACCAGACACAAACTTCACAATCTGACTGAtcacttttttttgcacagtatGTCCGATACTGTGACAGAAgccattaaaatgaaataatcaatGTTAGTCACTTCTcctgtcagtggttttaatgttatggctgatgtgTGTTGTTGGCTTGGTTTGCATACTGAATGCTTCTTCTCATTACtatgtttatttgtaacatttaaaaaagctccCAAACCTGTACTATATCTGTGATTACACAGTAACCTCCTTTCTATCCCTTGCTTTCAGTAGAATcatgttatttaaataaacatgttaaaaccACA

Function

symbol description
znf800 Predicted to enable DNA binding activity and metal ion binding activity. Predicted to be located in nucleus.

NR:

description
PREDICTED: zinc finger protein 800

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007246546.3 True 4675 mRNA 0.42 6 18653276 18668460

Neighbor

gene id symbol gene type direction distance location
LOC103032021 NA coding upstream 9197 18637244 ~ 18644079 (+)
LOC103027288 NA coding upstream 18329 18632303 ~ 18634947 (+)
LOC103026996 lamb1,lamb1a,LOC107662456,LOC107595246 coding upstream 38155 18577789 ~ 18615121 (+)
LOC103026700 lamb4 coding upstream 77909 18535874 ~ 18575367 (+)
LOC103030871 NA coding upstream 129101 18514747 ~ 18524175 (+)
LOC103033497 grm8,grm8b,LOC107659486,LOC107698172,LOC107598887 coding downstream 3941 18672401 ~ 18838757 (+)
pot1 NA coding downstream 224767 18893227 ~ 18937127 (+)
gpr37 gpr37,gpr37a,LOC107753714,LOC107698235,LOC106584563 coding downstream 270635 18939095 ~ 18950348 (+)
LOC103034777 wasl,wasla,LOC108275301,LOC107598884,LOC107659464 coding downstream 388327 19056787 ~ 19081399 (+)
iqub iqub coding downstream 430056 19098516 ~ 19114949 (+)
G74714 NA non-coding upstream 25248 18627649 ~ 18628028 (+)
G74672 NA non-coding upstream 26866 18625071 ~ 18626410 (+)
G74668 NA non-coding upstream 119146 18533808 ~ 18534130 (+)
G74654 NA non-coding upstream 190640 18461444 ~ 18462636 (+)
G74535 LOC108436883 non-coding upstream 277737 18371716 ~ 18375539 (+)
LOC111193102 NA non-coding downstream 34261 18702721 ~ 18703887 (+)
G74770 NA non-coding downstream 289178 18957638 ~ 18970866 (+)
G74810 NA non-coding downstream 324218 18992678 ~ 18994863 (+)
G74831 NA non-coding downstream 413852 19082312 ~ 19082521 (+)
G74833 NA non-coding downstream 417343 19085803 ~ 19086231 (+)
LOC103029914 scamp5,scamp5a,LOC108436905,LOC103363822,LOC107395508,LOC107703195 other upstream 173931 18470704 ~ 18479345 (+)
G74649 NA other upstream 198079 18454851 ~ 18455197 (+)
G74169 NA other upstream 2364947 16286676 ~ 16288329 (+)
svip svip other upstream 3075743 15572302 ~ 15577533 (+)
rpgrip1l rpgrip1l other upstream 3732273 14891534 ~ 14921003 (+)
G74832 NA other downstream 414356 19082816 ~ 19085556 (+)
cadps2 NA other downstream 471689 19140149 ~ 19322775 (+)
tmem17 tmem17,znf774,LOC107678976,LOC107753710 other downstream 791498 19459958 ~ 19462187 (+)
LOC103044129 NA other downstream 858752 19527212 ~ 19537617 (+)
LOC103028745 NA other downstream 1535159 20203619 ~ 20207955 (+)

Expression


Co-expression Network