LOC103034777 (wasl,wasla,LOC108275301,LOC107598884,LOC107659464)


Basic Information

Item Value
gene id LOC103034777
gene name wasl,wasla,LOC108275301,LOC107598884,LOC107659464
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 19056787 ~ 19081399 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007246552.3
GATACTGTAGGTTTTAGGGACCGCTATCCCGCTTTATATGAGCCGGTGTGATCCGGGGTGTTGGTGTAAATCAGCCGGTGATGAAAGTAGTTTCACATTGTGAGGATTAAATATTTTGATTTCTGCTGATTCAAGCCCCCCTTTGGCCGAGTGTTGATCGGCTTGCCCGCCCCGCTGCCATGTTGGATTGAGGGATCGTGTTTGCTGTGGGAGTTGGAGATGAAAGTTTATATTGTGCAGTTTGGCGATTATTGACGCCTGCAAAGTGCGGTCCTTTCGTGGAAGTAGAGGATTGGTTTCTGGGGGGCCTGCGCAGGGAGAAAACACGCCGGTGGTCtctccttgtgtgtgtgtgagagtgtgtgtgttaggaatGCGGGTTCCAGGATGAGCCGAGTGCAGGCCATGGTGACCAGAGATTGCAcgtattttacataaaacactcTTTTAGCGGACAGACGTCTCTACTAACTAGTTGGTCTCGACTCTCGGCAATATGAGTGGACATCCGCCTCAGAGGAGGGTGGCGAATGTCGGATCTATGCTTCTCACCCCTCAGGAGAACGAGTGTCTCTTCAGCTACCTTGGCAGAAAATGCATCACACTTTGTTCGGCAGTGGTCCAAGTGTATGTAGCAGACAGGGGCCCATCCTGGACCAAAAGATGCTGTGGTGTAGCTTGCTTGGTGAAAGATAACCCTCAGAGGTCTTATTTCATCCGTGTGTTTGATATCAAGgATGGAAAACCTAAATTTGAGCAGGAACTCTACAATAATTTTTCAAGCAGTAGTTCAAGACCATACTTTATTGCATTTGCAGGAGATACTTGTCAGGTCGGCCTGAATTTTGCCAGTGAAGAGGAAGCAAAGCGTTTTCGTGCTACACTAAATGAACTGCTCAGCAGACGACAGAAGAAAACTGagaAAAGGCGTGATCCTCCAAATGGACCCACGTTGCCAATGGCGACGGTGGACATCAAGAACCCGGAGATAAACAATGTGCGCTTCCACAATTCCCACATGAACAACATGGTGCACAGTAGCTTTaacaagaaggagaagaaggtgAAGGGCAAGAGGAAGAAACTGACGAAGGCTGATATTGGGACCCCAAGCAACTTCCAGCACATTGGCCATGTGGGCTGGGATCCGAACACAGGCTTCGATCTGAATAATCTGGACCCAGAGCTGAAAATTCTGTTTGACATGTGTGGCATCTCTGAAGCTCAGCTGAAAGACAAAGAGACATCTAAAGTGATTTATGACTTCATTGAGAAGAAGGGAGGTGTGGAGGCTGTTAAAAACGAACTGAGGAGGCAAGCACCTCCGCCTCCTCCATCACGTGGTGGTCCTCCTCCCCCGCCCCCTCCACACTCCTCTggacctcctcctcctcctccccctgcCCGAGGACGAGGGGCCCCACCACCCCCTCCGCCGTCTAGGGCCCCAACATCTGCACCTCCACCCCCTCCTCCGTCCCGACAAGGCATGGGAGCCCCTCCTCCTCCGCCTCCGAGCAGGGggcacccccctccccctcctcctgcTCATGCCAGCATGCCACCCCAAGCACCCCAGTCTCATCCTCCACCCCCGCCCCCTCCGCCATCTGGAGGAAGCGCTCCGCCCCCTCCTCCTCCGCCCCCTCCTCCACCTGGACCTCCACCTCCGCCCGAAATGGAAGGGAGCGTAGACTCAGTGCCCTCtcctgtggggggtaagtcagccCTGCTGGAGCAGATCAGAGAGGGCACCCAGCTGAAGAAGGTGGAGCAGAACAACAGGCCAGTGTCTTCTACGGGGCGCGATGCCCTCCTCGACCAGATCCGACAGGGCATTCAGCTCAAAACGGTATCAGATAGTTCTGACTCAGGCCCACCAACTCCTGCTCTCTCATCAGGCATCGTTGGAGCACTTATGGAGGTCATGCAGAAGAGGAGCAAAGCCATCCATTCCTCAGatgaagatgaggatgatgaCGAAGATGAAGACTTTGAGGACGACGATGAATGGGATGATTAGTCCTGGTCTCCTTATGCTAACCCCACCCAGTAGAATAACTGACACTAAATTCTCACCTTTCCAAATTGTACTCAAATTCTGTACATGTTCTTTCAAATCGCTGTATATTtttgttgccttttttttttaataatttgtgcAATACCTCATATAATCTGTAAAGTATTGTCATGTATCCTCTGTAAAGTAATCTCCTGGGATAACCACGTGAAGTTTAATGCCAGGCTGGGTTTTCTTGACTAGTTGATTTGAATGTTTTTGTTCCCTCGTTAATGAGGAAAGGGAGATGGACAGGATCCTCTAAGTTCTTGTTAATTGTTGATTAATGATTGAAAACGCTATTTTCATACCCTACTTTTCTGTACCTTCGATTTTCTTATTCAAATCCTAGTTTAGCACTCTACGTTTTGGTAAGAGGTTCTTCTATCAGAATATTTAATCCCTCCACCCTCCCACCCACTTCTGTATAGTTACTATGTAAATGTACACTAGGCAGATATACTGCGGTTGTTATGTTTTGCACGGATGTCAAAACAAAAGTCACTACAAGACAAAAGTCACAACAAGACTACAAAACACTACATTCTCACCAATTATACCCTGTGACTCTTCcttacagagagaaagaaaaagaaaatcactcGACACTGCATGTCAAtagacagtcttttttttttttttttttttttttttttttagtttgttgcTTTTTGGTGTTATTGAAAAAGATAACGCTGTAGTTTCAAACCGGTTAAAGTTATGAATGCCGCTTGCTTCTGGATATGGTGATCACGCCCTCTCAGTAACAGGTTTTTATTCAAGTCATATCATAAGAAAAAGCACTACACGAAGCATTCAGTGAACCTAAACCATTTACTAGAAGCTGTTAAAAAGCCAATGCTTGACTGACACCTACATGTAAGGTAAAATACAAGGTAAAACACCTTTGTGTAGCAATTAATGCTGTTTTAACAGTGTTTGTTTCAATTTCGCTGTCCTTCAAGGATTGTGCTGCATTAAAACTATAGAACTGACTTCAAACCTTACAAATGGGTTGGAATGTGGAATGAAAACACTAAATTGTGTACTTAAATAAATGGTAATATTGGTT
>XM_007246553.3
TACTGTAGGTTTTAGGGACCGCTATCCCGCTTTATATGAGCCGGTGTGATCCGGGGTGTTGGTGTAAATCAGCCGGTGATGAAAGTAGTTTCACATTGTGAGGATTAAATATTTTGATTTCTGCTGATTCAAGCCCCCCTTTGGCCGAGTGTTGATCGGCTTGCCCGCCCCGCTGCCATGTTGGATTGAGGGATCGTGTTTGCTGTGGGAGTTGGAGATGAAAGTTTATATTGTGCAGTTTGGCGATTATTGACGCCTGCAAAGTGCGGTCCTTTCGTGGAAGTAGAGGATTGGTTTCTGGGGGGCCTGCGCAGGGAGAAAACACGCCGGTGGTCtctccttgtgtgtgtgtgagagtgtgtgtgttaggaatGCGGGTTCCAGGATGAGCCGAGTGCAGGCCATGGTGACCAGAGATTGCAcgtattttacataaaacactcTTTTAGCGGACAGACGTCTCTACTAACTAGTTGGTCTCGACTCTCGGCAATATGAGTGGACATCCGCCTCAGAGGAGGGTGGCGAATGTCGGATCTATGCTTCTCACCCCTCAGGAGAACGAGTGTCTCTTCAGCTACCTTGGCAGAAAATGCATCACACTTTGTTCGGCAGTGGTCCAAGTGTATGTAGCAGACAGGGGCCCATCCTGGACCAAAAGATGCTGTGGTGTAGCTTGCTTGGTGAAAGATAACCCTCAGAGGTCTTATTTCATCCGTGTGTTTGATATCAAGgATGGAAAACCTAAATTTGAGCAGGAACTCTACAATAATTTTTCAAGCAGTAGTTCAAGACCATACTTTATTGCATTTGCAGGAGATACTTGTCAGGTCGGCCTGAATTTTGCCAGTGAAGAGGAAGCAAAGCGTTTTCGTGCTACACTAAATGAACTGCTCAGCAGACGACAGAAGAAAACTGGACCCACGTTGCCAATGGCGACGGTGGACATCAAGAACCCGGAGATAAACAATGTGCGCTTCCACAATTCCCACATGAACAACATGGTGCACAGTAGCTTTaacaagaaggagaagaaggtgAAGGGCAAGAGGAAGAAACTGACGAAGGCTGATATTGGGACCCCAAGCAACTTCCAGCACATTGGCCATGTGGGCTGGGATCCGAACACAGGCTTCGATCTGAATAATCTGGACCCAGAGCTGAAAATTCTGTTTGACATGTGTGGCATCTCTGAAGCTCAGCTGAAAGACAAAGAGACATCTAAAGTGATTTATGACTTCATTGAGAAGAAGGGAGGTGTGGAGGCTGTTAAAAACGAACTGAGGAGGCAAGCACCTCCGCCTCCTCCATCACGTGGTGGTCCTCCTCCCCCGCCCCCTCCACACTCCTCTggacctcctcctcctcctccccctgcCCGAGGACGAGGGGCCCCACCACCCCCTCCGCCGTCTAGGGCCCCAACATCTGCACCTCCACCCCCTCCTCCGTCCCGACAAGGCATGGGAGCCCCTCCTCCTCCGCCTCCGAGCAGGGggcacccccctccccctcctcctgcTCATGCCAGCATGCCACCCCAAGCACCCCAGTCTCATCCTCCACCCCCGCCCCCTCCGCCATCTGGAGGAAGCGCTCCGCCCCCTCCTCCTCCGCCCCCTCCTCCACCTGGACCTCCACCTCCGCCCGAAATGGAAGGGAGCGTAGACTCAGTGCCCTCtcctgtggggggtaagtcagccCTGCTGGAGCAGATCAGAGAGGGCACCCAGCTGAAGAAGGTGGAGCAGAACAACAGGCCAGTGTCTTCTACGGGGCGCGATGCCCTCCTCGACCAGATCCGACAGGGCATTCAGCTCAAAACGGTATCAGATAGTTCTGACTCAGGCCCACCAACTCCTGCTCTCTCATCAGGCATCGTTGGAGCACTTATGGAGGTCATGCAGAAGAGGAGCAAAGCCATCCATTCCTCAGatgaagatgaggatgatgaCGAAGATGAAGACTTTGAGGACGACGATGAATGGGATGATTAGTCCTGGTCTCCTTATGCTAACCCCACCCAGTAGAATAACTGACACTAAATTCTCACCTTTCCAAATTGTACTCAAATTCTGTACATGTTCTTTCAAATCGCTGTATATTtttgttgccttttttttttaataatttgtgcAATACCTCATATAATCTGTAAAGTATTGTCATGTATCCTCTGTAAAGTAATCTCCTGGGATAACCACGTGAAGTTTAATGCCAGGCTGGGTTTTCTTGACTAGTTGATTTGAATGTTTTTGTTCCCTCGTTAATGAGGAAAGGGAGATGGACAGGATCCTCTAAGTTCTTGTTAATTGTTGATTAATGATTGAAAACGCTATTTTCATACCCTACTTTTCTGTACCTTCGATTTTCTTATTCAAATCCTAGTTTAGCACTCTACGTTTTGGTAAGAGGTTCTTCTATCAGAATATTTAATCCCTCCACCCTCCCACCCACTTCTGTATAGTTACTATGTAAATGTACACTAGGCAGATATACTGCGGTTGTTATGTTTTGCACGGATGTCAAAACAAAAGTCACTACAAGACAAAAGTCACAACAAGACTACAAAACACTACATTCTCACCAATTATACCCTGTGACTCTTCcttacagagagaaagaaaaagaaaatcactcGACACTGCATGTCAAtagacagtcttttttttttttttttttttttttttttttagtttgttgcTTTTTGGTGTTATTGAAAAAGATAACGCTGTAGTTTCAAACCGGTTAAAGTTATGAATGCCGCTTGCTTCTGGATATGGTGATCACGCCCTCTCAGTAACAGGTTTTTATTCAAGTCATATCATAAGAAAAAGCACTACACGAAGCATTCAGTGAACCTAAACCATTTACTAGAAGCTGTTAAAAAGCCAATGCTTGACTGACACCTACATGTAAGGTAAAATACAAGGTAAAACACCTTTGTGTAGCAATTAATGCTGTTTTAACAGTGTTTGTTTCAATTTCGCTGTCCTTCAAGGATTGTGCTGCATTAAAACTATAGAACTGACTTCAAACCTTACAAATGGGTTGGAATGTGGAATGAAAACACTAAATTGTGTACTTAAATAAATGGTAATATTGGTT
>XM_007246554.3
CATGTAAGGCCTGGAGCAAATTTTAGAGCTTAAGTGGGATTAGCTGTGGTTTTAGtgatttatgtaatattctgcAGAATTTGTAATTTATCAGGATTTGACGTGTGTCGTTCTCATTGGTGGGCGTTGGGTTTGTCAAAACTCATACCGAACGAGTCAGGGGCTCAGTGTGAGCGCAGGCGTTAATTAGAATGTCTCTAAAAGTCAGTCTTGCAGATCTTTTACTTGCCATGTTTTTCCTTCGGCTGCACCAAGATGATGTTCTGTACGACTTTCCTGTCTGCGCCATCTGAGGAGTTTTTAGAGAACGTTTCCAAGCCTGAGGGCTGTCTTGCACCTCTTCACTGCATGGTGTTATCAGGGGATAAGCTTTATTCACCTTTAGTCCAGCCTGAGAGTCTGCCTGAGCTGTTGGTACAGCGCAGTGACGGAGCGTCCGTATTAGCAGCAAGTGTGCTCTCAGGAGCTGCTGTGAACTGTTTGCCTTCAAAGTGGAATGATTGTGAAGGTAGTGAGGAGAGAATCATGAAGGACACCAAAGGACCCACGTTGCCAATGGCGACGGTGGACATCAAGAACCCGGAGATAAACAATGTGCGCTTCCACAATTCCCACATGAACAACATGGTGCACAGTAGCTTTaacaagaaggagaagaaggtgAAGGGCAAGAGGAAGAAACTGACGAAGGCTGATATTGGGACCCCAAGCAACTTCCAGCACATTGGCCATGTGGGCTGGGATCCGAACACAGGCTTCGATCTGAATAATCTGGACCCAGAGCTGAAAATTCTGTTTGACATGTGTGGCATCTCTGAAGCTCAGCTGAAAGACAAAGAGACATCTAAAGTGATTTATGACTTCATTGAGAAGAAGGGAGGTGTGGAGGCTGTTAAAAACGAACTGAGGAGGCAAGCACCTCCGCCTCCTCCATCACGTGGTGGTCCTCCTCCCCCGCCCCCTCCACACTCCTCTggacctcctcctcctcctccccctgcCCGAGGACGAGGGGCCCCACCACCCCCTCCGCCGTCTAGGGCCCCAACATCTGCACCTCCACCCCCTCCTCCGTCCCGACAAGGCATGGGAGCCCCTCCTCCTCCGCCTCCGAGCAGGGggcacccccctccccctcctcctgcTCATGCCAGCATGCCACCCCAAGCACCCCAGTCTCATCCTCCACCCCCGCCCCCTCCGCCATCTGGAGGAAGCGCTCCGCCCCCTCCTCCTCCGCCCCCTCCTCCACCTGGACCTCCACCTCCGCCCGAAATGGAAGGGAGCGTAGACTCAGTGCCCTCtcctgtggggggtaagtcagccCTGCTGGAGCAGATCAGAGAGGGCACCCAGCTGAAGAAGGTGGAGCAGAACAACAGGCCAGTGTCTTCTACGGGGCGCGATGCCCTCCTCGACCAGATCCGACAGGGCATTCAGCTCAAAACGGTATCAGATAGTTCTGACTCAGGCCCACCAACTCCTGCTCTCTCATCAGGCATCGTTGGAGCACTTATGGAGGTCATGCAGAAGAGGAGCAAAGCCATCCATTCCTCAGatgaagatgaggatgatgaCGAAGATGAAGACTTTGAGGACGACGATGAATGGGATGATTAGTCCTGGTCTCCTTATGCTAACCCCACCCAGTAGAATAACTGACACTAAATTCTCACCTTTCCAAATTGTACTCAAATTCTGTACATGTTCTTTCAAATCGCTGTATATTtttgttgccttttttttttaataatttgtgcAATACCTCATATAATCTGTAAAGTATTGTCATGTATCCTCTGTAAAGTAATCTCCTGGGATAACCACGTGAAGTTTAATGCCAGGCTGGGTTTTCTTGACTAGTTGATTTGAATGTTTTTGTTCCCTCGTTAATGAGGAAAGGGAGATGGACAGGATCCTCTAAGTTCTTGTTAATTGTTGATTAATGATTGAAAACGCTATTTTCATACCCTACTTTTCTGTACCTTCGATTTTCTTATTCAAATCCTAGTTTAGCACTCTACGTTTTGGTAAGAGGTTCTTCTATCAGAATATTTAATCCCTCCACCCTCCCACCCACTTCTGTATAGTTACTATGTAAATGTACACTAGGCAGATATACTGCGGTTGTTATGTTTTGCACGGATGTCAAAACAAAAGTCACTACAAGACAAAAGTCACAACAAGACTACAAAACACTACATTCTCACCAATTATACCCTGTGACTCTTCcttacagagagaaagaaaaagaaaatcactcGACACTGCATGTCAAtagacagtcttttttttttttttttttttttttttttttagtttgttgcTTTTTGGTGTTATTGAAAAAGATAACGCTGTAGTTTCAAACCGGTTAAAGTTATGAATGCCGCTTGCTTCTGGATATGGTGATCACGCCCTCTCAGTAACAGGTTTTTATTCAAGTCATATCATAAGAAAAAGCACTACACGAAGCATTCAGTGAACCTAAACCATTTACTAGAAGCTGTTAAAAAGCCAATGCTTGACTGACACCTACATGTAAGGTAAAATACAAGGTAAAACACCTTTGTGTAGCAATTAATGCTGTTTTAACAGTGTTTGTTTCAATTTCGCTGTCCTTCAAGGATTGTGCTGCATTAAAACTATAGAACTGACTTCAAACCTTACAAATGGGTTGGAATGTGGAATGAAAACACTAAATTGTGTACTTAAATAAATGGTAATATTGGTT

Function

symbol description
wasla Predicted to enable actin binding activity. Acts upstream of or within macrophage differentiation and thrombocyte differentiation. Predicted to be located in nucleus. Predicted to be active in actin filament. Is expressed in caudal fin. Orthologous to human WASL (WASP like actin nucleation promoting factor).
wasl Predicted to enable identical protein binding activity. Involved in several processes, including actin filament polymerization; negative regulation of lymphocyte migration; and negative regulation of membrane tubulation. Located in cytosol and nucleus.

NR:

description
PREDICTED: neural Wiskott-Aldrich syndrome protein isoform X1

GO:

id name namespace
GO:2000601 positive regulation of Arp2/3 complex-mediated actin nucleation biological_process
GO:0003779 actin binding molecular_function

KEGG:

id description
K23612 WASL; neural Wiskott-Aldrich syndrome protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007246552.3 True 3134 mRNA 0.47 11 19056787 19081399
XM_007246553.3 False 3108 mRNA 0.47 10 19056789 19081399
XM_007246554.3 False 2731 mRNA 0.46 7 19067837 19081399

Neighbor

gene id symbol gene type direction distance location
gpr37 gpr37,gpr37a,LOC107753714,LOC107698235,LOC106584563 coding upstream 106439 18939095 ~ 18950348 (+)
pot1 NA coding upstream 119660 18893227 ~ 18937127 (+)
LOC103033497 grm8,grm8b,LOC107659486,LOC107698172,LOC107598887 coding upstream 218030 18672401 ~ 18838757 (+)
LOC103032349 znf800 coding upstream 388327 18653276 ~ 18668460 (+)
LOC103032021 NA coding upstream 412708 18637244 ~ 18644079 (+)
iqub iqub coding downstream 17117 19098516 ~ 19114949 (+)
slc13a1 slc13a1 coding downstream 38148 19119547 ~ 19133880 (+)
fezf1 fezf1,fezf2,LOC102788291 coding downstream 248852 19330251 ~ 19334337 (+)
aass aass,LOC107698474,LOC107752301,LOC107753626,LOC107678990 coding downstream 259881 19341280 ~ 19362921 (+)
slc15a5 slc15a5,LOC107577043,LOC107598876,LOC107753711,LOC107575796 coding downstream 372654 19454053 ~ 19459308 (+)
G74810 NA non-coding upstream 61924 18992678 ~ 18994863 (+)
G74770 NA non-coding upstream 85921 18957638 ~ 18970866 (+)
LOC111193102 NA non-coding upstream 352900 18702721 ~ 18703887 (+)
G74714 NA non-coding upstream 428759 18627649 ~ 18628028 (+)
G74672 NA non-coding upstream 430377 18625071 ~ 18626410 (+)
G74831 NA non-coding downstream 913 19082312 ~ 19082521 (+)
G74833 NA non-coding downstream 4404 19085803 ~ 19086231 (+)
G74951 fnbp4,LOC107598873,LOC107681673 non-coding downstream 396599 19477998 ~ 19481987 (+)
G74958 kiaa1033 non-coding downstream 425719 19507118 ~ 19510980 (+)
G74970 NA non-coding downstream 446261 19527660 ~ 19527911 (+)
LOC103029914 scamp5,scamp5a,LOC108436905,LOC103363822,LOC107395508,LOC107703195 other upstream 577442 18470704 ~ 18479345 (+)
G74649 NA other upstream 601590 18454851 ~ 18455197 (+)
G74169 NA other upstream 2768458 16286676 ~ 16288329 (+)
svip svip other upstream 3479254 15572302 ~ 15577533 (+)
rpgrip1l rpgrip1l other upstream 4135784 14891534 ~ 14921003 (+)
G74832 NA other downstream 1417 19082816 ~ 19085556 (+)
cadps2 NA other downstream 58750 19140149 ~ 19322775 (+)
tmem17 tmem17,znf774,LOC107678976,LOC107753710 other downstream 378559 19459958 ~ 19462187 (+)
LOC103044129 NA other downstream 445813 19527212 ~ 19537617 (+)
LOC103028745 NA other downstream 1122220 20203619 ~ 20207955 (+)

Expression


Co-expression Network