LOC103036047


Basic Information

Item Value
gene id LOC103036047
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 19081148 ~ 19086198 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007246556.3
tcCCTGTGCAGGCTGTGCCATTCCCCCACACCAGATCTGAGAGCTGTTTAGTGAGCAGAGCTGGCACTACTACTGTCAGTACTATGAGCAGTTTCGGCTACAGACAGGAACTTAATAAATATGAAGATGTGGACGAGGATGAACTTCTGGCTACCCTGACCAGCGAAGAGCTGCAGGAACtagaaagagaaatggctgaaatcgATCCAGATGAAAACACTCCCATCGGACTGAggcagctggatcaaacagccAAACAGCCCACAGGTCCGTTCTGCAGGGAGGCTCTGCTGAAGCACTGGCAGAACGAAACTCACAAACTACAAGAGACAGACAGCTCAGACTGTGCCCTGCAACAGGAGGGCATGGATGAGAGCCAGACAGATAAGAGTGAAGAGGAATGTTTAAGTGAGAGTGACACTGAGCCCtctcacaggacactgcagcTTCTCAACAACAACAAGAAGAAGAACGGACCACAAAACCACAGACAAGATAACTCAACTCAAGTGAAGAACTCATCTCAACCAGACTGCAAGAATACAAGCAAAACTGGCCACAGAAAAGGCAAGCTGAGTGGAACCAAGAGAGATGTCCACTACCAGGTAGACTCAAAGCTAAATATAATGCCTGAGGGACTGAGCAAGAATCCCACGGACATTGACGGCGTCCTGGAGAAGATCCTGAGAAACGACCAGTCTGTGAGTGAGGTCAACCTGAATAACATTGATAACCTTTCCCAGGATACGCTGATCAGCTTCGCAGAGGCTCTGACCTCCAACACGCATGTCCGAGTCTTCAGCCTTGCCAACACCCATGCAGACGATCAAGTGGCCTTAGCCCTGGCCAACACCATCAAGAACAACCACCACGTCTCCAGCCTCAACGTTGAATCCAACTTCATCTCGGGAAGAGGGATCCTGGCTCTGATCAGATCTCTCCAGCAGAACTCCAGCCTGGTGGAGCTTCGCTTCCAAAACCAGCGGCACATCTGTGGAGGCcaggtggagatggagatggtgaAGCTCCTGAGAGAAAACACCACCCTACTAAAGCTGGGGTACCAGTTTGAGCTTCCAGGTCCCAGAACGAGCGCAACCAGCATCCTGACCCGCAACCAGGACCGCCAGAGGCAAACAAGACTGCAGTTACAaagacaaaagaacaaaaagtctGAAGAAACAATGGCACAAACCACTCAAACGAAAACGAACGGGCCCCAAAACATGCCCGACAACGAAGTGGTCGGATTTTCCCAAGAACAGAAGAACGGTTCTCTTCctaaacttaaacctaaacAACTGCTTAATGGTCAAACTAACTACGAGAAGAATGGACCCACCAGAAATATTGCTGAAACAGTCAAAAATCAGAAGATCACAGCAGATAAGCAAGACATAAACAAGCATAACACAGAGAAGGTGAACAACCAGACCAAAGAAAAGGAAAGTGGAGATGTTCTGAAAGATATGATACATGCTCTAAAACCTCCACCCAAGAAAACACAAGAAGACAGGAACGGTCAGAGGTCAGCACATGGGGACTTAATGGCAGCAATCCGGAGCAACCACAGGACACTCAATAGGGTCAGCACCACAAACCATCAGAATTCATGAAGCAATATCAGCAAGTTGCCTTGGAGTCTACAGTTGGTCTTTtgtttccctttatttttccttgactgtgttttttcttgttaaaaCAGATGTAACAATATTAAGACTTCATTGGTAATTCCGTAAGTCATCTTTGGACTCTTACTGAAGGCAAATTTGACTTTTCTTTAGCCATTCTGGACAAATCAGTAACCACTGTTTTTTGCTCTGCCTCTGGACTCTAATATGTAGACTCTTGCAGAAATTTGACTTCAATATAACTTTGGCTATAATTCCACAGAATGGAAATGAAACCATAGCATCCATGTTATATGCAGTCAATgggacaaaaacaaataaagctgCACTACTAAGACTTGTCTTCTTGCTTAAAAGGACCTTTAAGACACAAATACAAACGATGGAGAAAATGAACCAATATTACCATTTATTTAAGTACACAATTTAGTGTTTTCATTCCACATTCCAACCCATTTGTAAGGTTTGAAGTCAGTTCTATAGTTTTAATGCAGCACAATCCTTGAAGGACAGCGAAATTGAAACAAACACTGTTAAAACAGCATTAATTGCTACACAAAGGTGTTTTACCTTGTATTTTACCTTACATGTAGGTGTCAGTCAAGCATTGGCTTTTTAACAGCTTCTAGTAAATGGTTTAGGTTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007246556.3 True 2280 mRNA 0.45 3 19081148 19086198

Neighbor

gene id symbol gene type direction distance location
LOC103035727 hyal6,LOC108436892,LOC107698319,LOC107752305,LOC105896038,LOC107573512,LOC106561028 coding downstream 34930 19023690 ~ 19046218 (-)
LOC103028224 NA coding downstream 94090 18978848 ~ 18987058 (-)
LOC103027908 NA coding downstream 103983 18975308 ~ 18977165 (-)
LOC103034129 NA coding downstream 107835 18970412 ~ 18973313 (-)
dld dld coding downstream 455953 18619136 ~ 18625195 (-)
asb15 asb15 coding upstream 695 19086893 ~ 19095789 (-)
ptprz1 ptprz1 coding upstream 278400 19364598 ~ 19437614 (-)
LOC103041446 LOC108436924 coding upstream 376159 19462357 ~ 19473042 (-)
fnbp4 fnbp4,LOC107681673,LOC107753624,LOC107678983 coding upstream 389352 19475550 ~ 19485147 (-)
lrrc10 lrrc10 coding upstream 400925 19487123 ~ 19488636 (-)
G74804 NA non-coding downstream 94955 18984195 ~ 18986193 (-)
G74796 NA non-coding downstream 113238 18960804 ~ 18967910 (-)
G74792 gpr37,gpr37a,LOC107753714,LOC107598835,LOC105006086,LOC107752307,LOC107698235 non-coding downstream 131032 18948629 ~ 18950116 (-)
G74740 NA non-coding downstream 431377 18649439 ~ 18649771 (-)
G74735 NA non-coding downstream 440963 18637263 ~ 18640185 (-)
G74910 NA non-coding upstream 193454 19279652 ~ 19341936 (-)
G74915 NA non-coding upstream 201142 19287340 ~ 19290287 (-)
G74928 NA non-coding upstream 239194 19325392 ~ 19418804 (-)
G74909 aass,LOC107753626,LOC107678990,LOC107752301,LOC107698474 non-coding upstream 258747 19344945 ~ 19350011 (-)
G74911 aass,LOC102787118 non-coding upstream 267895 19354093 ~ 19355051 (-)
G74838 wasl,LOC105896696,LOC108275301 other downstream 8260 19070938 ~ 19072888 (-)
LOC103034453 LOC108436916,LOC107753633,LOC107659484,LOC107573489,LOC107752304,LOC108181664,LOC107598834 other downstream 72782 18992668 ~ 19008366 (-)
G74791 NA other downstream 140684 18939174 ~ 18940464 (-)
G74591 isl2,LOC105022634 other downstream 1051401 17982747 ~ 18029747 (-)
nrg4 NA other downstream 1195753 17877026 ~ 17885395 (-)
G75100 LOC108436948,LOC108275266 other upstream 773496 19859694 ~ 19865982 (-)
G75207 api5,LOC107696269,LOC107753602 other upstream 940964 20027162 ~ 20032027 (-)
hsd17b12 hsd17b12,hsd17b12a,LOC107661451,LOC107696265,LOC107573907,LOC107716735,LOC107753600 other upstream 998230 20084428 ~ 20100250 (-)
LOC103032014 maf,LOC108428434,LOC108274756,LOC102790406,LOC102298902,LOC101477682,LOC102192535,LOC101173775,LOC100702616,LOC107663990,LOC107565340 other upstream 1536443 20622641 ~ 20748208 (-)
gatd1 pddc1,LOC102788149 other upstream 1979121 21065319 ~ 21071246 (-)

Expression


Co-expression Network