slc13a1 (slc13a1)


Basic Information

Item Value
gene id slc13a1
gene name slc13a1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 19119547 ~ 19133880 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007246558.3
CACAGGTTTCCATGCTGAGATCACTGAACCTACATAATTCAGCCCAAGATGAGTTCAACAACTTTTGCAGTGGCAAGTGAGGACGAGTCATACTCTTTCCTCCAGGAGACACTTTCCCTGACTTCACATCATCCAGACACACCATGAGGGCGTTTGCTGTAGGACTATGGAGCTATCGGAGTCTGATCATCATCTTTCTTACACCACTGTTATTACTGCCGCTGCCTCTGGTCATCCCGTCCAAGGTGTCAGAATGTGCATACACCCTGATTCTGATGGCGGTGTTCTGGATGACGGAGGCAATGCCCCTGTCTGTTACTGCCCTCCTTCCAGCGTTCCTGTTCCCTCTCTTCGGCATCATGAAGTCCTCAGTGGTTGCAACAATGTATTTCAAAGACTTCCACCTGCTACTACTTGGGGTTATCTGTCTTGCGACATCCATAGAGAAGTGGGGTCTCCATCGCAGAATTGCCCTCAAACTGGTCACTTTGGTTGGAGTGAACCCTGGCATGTTGATGCTGGGCATGATGGTAGGCTGCGGCTTCCTCTCCATGTGGTTGAGCAACACATCTACTGTAGCCATGGTGATGCCCATTGTAGAGGCAGTGATGCAGCAGGTGATGAGTGCAGAAGGTCAGGTCAGCACCCATCAGGAGAAGGCAATGTCTGGCATCTGCAATCCTGCACTCCAGATGGAAGGTGATGCTGAGAAACAGTCTGAAAAGGGCAAGGAAGTGAAAAGTGCTGATCCAGTCATTACTGAAATAGTTTTGACTGTCCCTGAAGAAGATCATGCCACAGAGAACCTGCCATATTCACCACTAAACTCAAAGTACAGGACCCACAGAGATCACATGATGTGTAAATGTCTGTCCCTCTGCATTGCATACTCTGCATGTATCGGTGGATTGACCACACTACCAGGAACATCCTCCAATCTCATCTTTGCTGAATATATTCATCAgttCTACCCAGAGTGCAAGTCCATCAACTTTGGGAACTGGTTTATTTTCTCCCTTCCGATTTGCATCATTATCATGTTGTTGGGCTGGGTATGGTTGCACTGGCTGTTCCTGGGCTTGGATTTCCGCTACATGCTCTGCTCCAAAGGAGGCCGTCCTGAGCGAGAGATTGCAGCAGCCAAGCTCATCAAGGAGGAGTATAACGCGCTGGGGCCCGTAAGCCGACAGGAGAAGATCACCCTAGTTATTTTCTCGCTGATGGCACTGCTGTGGTTCGTCAGAGATCCTGGCTTCATGCCAGGCTGGGCATCTCTATTTCCTGACTACCCAGGCTATGCCACTGATGCCACTGTGGCTCTTATTCTGGGCGTTTTTCTCTTCATCAtccctgctaagagacccactGCGGATGGCTATGAGGCAATGATCTCATGGAAGGAGTTTGAAGCTTGTATGCCTTGGGAAATCTGTCTGCTCGTGGGTGGAGGCTTTGCTTTAGCGGAGGGCACCAAGGTTTCTGGTTTATCTTCCTGGGTTGCTGAATTGATGACCCCGTTAGGAAGCCTCCCTGTGCTGGCCATCGTTGCCATCGCCTGTATAATTGTCACCTCTGTCACTGAAGTGGCGAGCAATCCAGCTACCATCACCATCTTCCTACCCATCCTCTCTCCTTTGGCTGAAGCTATCAAGGTTAATCCCCTCTACATGCTGATACCTGCAACCCTTAGTGTCTCCTTCTCCTTCCTACTTCCATTCTCCAACCCTCCAAATGCCATTGTCTTCGTATATGGGCATCTTTCAATTATGGATATGGTAAAAGCTGGACTGGGCTTGAATATCATTGGTGTTCTTGTAGTCCTGTTAGCTATCAGTACATGGGGGACAGGAATCTTCGATCTGAACACCTTCCCAGACTGGGCCAACAGCCACGGGCTTACAAACACGACTGGCTTTTGAGCAGTTACACTGTATtgtataatacacacacacacatatatatacatatttatatatacttatattgtACAGTATACTGAGAAATAATGAGCAGTGCCAAAGAGTGCTTGATTATAATGAGTAAATCACCTCTAAATAGAAGGAAGTGATTTGGACTCTCCAGGTCCAAGTTGAAGATGcaagaatataataatatattgtgaaCTATTTTGAAAGTCTTGCTGTGGATTTTACGGTGAATGTTGTTAAGAACACACTTAATGTGTCCACATTTGATGATTTGTGTTTTGTAAGCTGTCTGAAGGCAAAGTGTTTGAGCTGAAGGAGTAAGTAATGTGTGCTGTTCTgtatatagagttttttttgtacagatGATACTTTTTATAACCAATACTAgaataataactttatttatatgagca
>XM_007246559.3
CACAGGTTTCCATGCTGAGATCACTGAACCTACATAATTCAGCCCAAGATGAGTTCAACAACTTTTGCAGTGGCAAGTGAGGACGAGTCATACTCTTTCCTCCAGGAGACACTTTCCCTGACTTCACATCATCCAGACACACCATGAGGGCGTTTGCTGTAGGACTATGGAGCTATCGGAGTCTGATCATCATCTTTCTTACACCACTGTTATTACTGCCGCTGCCTCTGGTCATCCCGTCCAAGGTGTCAGAATGTGCATACACCCTGATTCTGATGGCGGTGTTCTGGATGACGGAGGCAATGCCCCTGTCTGTTACTGCCCTCCTTCCAGCGTTCCTGTTCCCTCTCTTCGGCATCATGAAGTCCTCAGTGGTTGCAACAATGTATTTCAAAGACTTCCACCTGCTACTACTTGGGGTTATCTGTCTTGCGACATCCATAGAGAAGTGGGGTCTCCATCGCAGAATTGCCCTCAAACTGGTCACTTTGGTTGGAGTGAACCCTGGCATGTTGATGCTGGGCATGATGGTAGGCTGCGGCTTCCTCTCCATGTGGTTGAGCAACACATCTACTGTAGCCATGGTGATGCCCATTGTAGAGGCAGTGATGCAGCAGGTGATGAGTGCAGAAGGTCAGGTCAGCACCCATCAGGAGAAGGCAATGTCTGGCATCTGCAATCCTGCACTCCAGATGGAAGATGCTGAGAAACAGTCTGAAAAGGGCAAGGAAGTGAAAAGTGCTGATCCAGTCATTACTGAAATAGTTTTGACTGTCCCTGAAGAAGATCATGCCACAGAGAACCTGCCATATTCACCACTAAACTCAAAGTACAGGACCCACAGAGATCACATGATGTGTAAATGTCTGTCCCTCTGCATTGCATACTCTGCATGTATCGGTGGATTGACCACACTACCAGGAACATCCTCCAATCTCATCTTTGCTGAATATATTCATCAgttCTACCCAGAGTGCAAGTCCATCAACTTTGGGAACTGGTTTATTTTCTCCCTTCCGATTTGCATCATTATCATGTTGTTGGGCTGGGTATGGTTGCACTGGCTGTTCCTGGGCTTGGATTTCCGCTACATGCTCTGCTCCAAAGGAGGCCGTCCTGAGCGAGAGATTGCAGCAGCCAAGCTCATCAAGGAGGAGTATAACGCGCTGGGGCCCGTAAGCCGACAGGAGAAGATCACCCTAGTTATTTTCTCGCTGATGGCACTGCTGTGGTTCGTCAGAGATCCTGGCTTCATGCCAGGCTGGGCATCTCTATTTCCTGACTACCCAGGCTATGCCACTGATGCCACTGTGGCTCTTATTCTGGGCGTTTTTCTCTTCATCAtccctgctaagagacccactGCGGATGGCTATGAGGCAATGATCTCATGGAAGGAGTTTGAAGCTTGTATGCCTTGGGAAATCTGTCTGCTCGTGGGTGGAGGCTTTGCTTTAGCGGAGGGCACCAAGGTTTCTGGTTTATCTTCCTGGGTTGCTGAATTGATGACCCCGTTAGGAAGCCTCCCTGTGCTGGCCATCGTTGCCATCGCCTGTATAATTGTCACCTCTGTCACTGAAGTGGCGAGCAATCCAGCTACCATCACCATCTTCCTACCCATCCTCTCTCCTTTGGCTGAAGCTATCAAGGTTAATCCCCTCTACATGCTGATACCTGCAACCCTTAGTGTCTCCTTCTCCTTCCTACTTCCATTCTCCAACCCTCCAAATGCCATTGTCTTCGTATATGGGCATCTTTCAATTATGGATATGGTAAAAGCTGGACTGGGCTTGAATATCATTGGTGTTCTTGTAGTCCTGTTAGCTATCAGTACATGGGGGACAGGAATCTTCGATCTGAACACCTTCCCAGACTGGGCCAACAGCCACGGGCTTACAAACACGACTGGCTTTTGAGCAGTTACACTGTATtgtataatacacacacacacatatatatacatatttatatatacttatattgtACAGTATACTGAGAAATAATGAGCAGTGCCAAAGAGTGCTTGATTATAATGAGTAAATCACCTCTAAATAGAAGGAAGTGATTTGGACTCTCCAGGTCCAAGTTGAAGATGcaagaatataataatatattgtgaaCTATTTTGAAAGTCTTGCTGTGGATTTTACGGTGAATGTTGTTAAGAACACACTTAATGTGTCCACATTTGATGATTTGTGTTTTGTAAGCTGTCTGAAGGCAAAGTGTTTGAGCTGAAGGAGTAAGTAATGTGTGCTGTTCTgtatatagagttttttttgtacagatGATACTTTTTATAACCAATACTAgaataataactttatttatatgagc

Function

symbol description
slc13a1 Enables sodium:sulfate symporter activity. Acts upstream of or within sodium ion transport and sulfate transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain; eye; and pleuroperitoneal region. Orthologous to human SLC13A1 (solute carrier family 13 member 1).

NR:

description
solute carrier family 13 member 1

GO:

id name namespace
GO:0008272 sulfate transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0015382 sodium molecular_function

KEGG:

id description
K14444 SLC13A1_4; solute carrier family 13 (sodium/sulfate cotransporter), member 1/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007246558.3 True 2341 mRNA 0.46 16 19119547 19133880
XM_007246559.3 False 2337 mRNA 0.46 16 19119547 19133879

Neighbor

gene id symbol gene type direction distance location
iqub iqub coding upstream 4598 19098516 ~ 19114949 (+)
LOC103034777 wasl,wasla,LOC108275301,LOC107598884,LOC107659464 coding upstream 38148 19056787 ~ 19081399 (+)
gpr37 gpr37,gpr37a,LOC107753714,LOC107698235,LOC106584563 coding upstream 169199 18939095 ~ 18950348 (+)
pot1 NA coding upstream 182420 18893227 ~ 18937127 (+)
LOC103033497 grm8,grm8b,LOC107659486,LOC107698172,LOC107598887 coding upstream 280790 18672401 ~ 18838757 (+)
fezf1 fezf1,fezf2,LOC102788291 coding downstream 196371 19330251 ~ 19334337 (+)
aass aass,LOC107698474,LOC107752301,LOC107753626,LOC107678990 coding downstream 207400 19341280 ~ 19362921 (+)
slc15a5 slc15a5,LOC107577043,LOC107598876,LOC107753711,LOC107575796 coding downstream 320173 19454053 ~ 19459308 (+)
cnot2 cnot2,LOC108275083,LOC108436929,LOC107678985,LOC107696293 coding downstream 360042 19493922 ~ 19503421 (+)
LOC103044412 NA coding downstream 406581 19540461 ~ 19560568 (+)
G74833 NA non-coding upstream 33316 19085803 ~ 19086231 (+)
G74831 NA non-coding upstream 37026 19082312 ~ 19082521 (+)
G74810 NA non-coding upstream 124684 18992678 ~ 18994863 (+)
G74770 NA non-coding upstream 148681 18957638 ~ 18970866 (+)
LOC111193102 NA non-coding upstream 415660 18702721 ~ 18703887 (+)
G74951 fnbp4,LOC107598873,LOC107681673 non-coding downstream 344118 19477998 ~ 19481987 (+)
G74958 kiaa1033 non-coding downstream 373238 19507118 ~ 19510980 (+)
G74970 NA non-coding downstream 393780 19527660 ~ 19527911 (+)
G74982 NA non-coding downstream 407040 19540920 ~ 19543821 (+)
G74992 NA non-coding downstream 459685 19593565 ~ 19595241 (+)
G74832 NA other upstream 33991 19082816 ~ 19085556 (+)
LOC103029914 scamp5,scamp5a,LOC108436905,LOC103363822,LOC107395508,LOC107703195 other upstream 640202 18470704 ~ 18479345 (+)
G74649 NA other upstream 664350 18454851 ~ 18455197 (+)
G74169 NA other upstream 2831218 16286676 ~ 16288329 (+)
svip svip other upstream 3542014 15572302 ~ 15577533 (+)
cadps2 NA other downstream 6269 19140149 ~ 19322775 (+)
tmem17 tmem17,znf774,LOC107678976,LOC107753710 other downstream 326078 19459958 ~ 19462187 (+)
LOC103044129 NA other downstream 393332 19527212 ~ 19537617 (+)
LOC103028745 NA other downstream 1069739 20203619 ~ 20207955 (+)
G75383 morc2,LOC107754332,LOC107701074,LOC107674835 other downstream 1889376 21023256 ~ 21025128 (+)

Expression


Co-expression Network