lrrc10 (lrrc10)


Basic Information

Item Value
gene id lrrc10
gene name lrrc10
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 19487123 ~ 19488636 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007246586.3
CATAAATGAGGGAGGGCAAGCTGGATATCATCTTTGGCACTTCCAGGAGTCAGCCAGGCAAAGCTTTGAGCAAGGCAGAGGTCTAAGCCCAGtgtggagtaaaaaaaaaaacaataaatgggATGGGATAGAATGGAATTAAATGAAGGAAAGATTCTCTTCAGCTGCTTAGGGGCATGAAATTGGACTGGAATAATGGGAAATGTTGTTCGTGGAGCTGTGGCCTTCATTCCATCAGACCGGTGTCAGCAGTATTTGGTGGGGGACTTGAAGGAGATGCCCCATGACTGTACTGTGGATCTGAGCAGTCGTCAGCTGCGGCGCTTCCCCATTAGAGCTTGTGCCTTTAGAGAACTTGTTAAACTTTACCTTAGTGATAACCACCTGAGCAGTCTGCCACCTGAGCTCCACAACCTACAAAAACTACAACTTCTAGCTCTGGACTTCAACTGCTTTGAGGAGCTGCCATCAGTTGTTTGCAGCCTTCGGCAGCTCAATATCCTCTACCTCGGGAATAACAGACTGTACAAACTGCCAAAAGAGCTGGCCAAGCTTTCCGAACTAAAGACACTGTGGTTGGAGACCAACTGCTTTATAACATTTCCAAGTGTTGTGTGTAAACTTCCCAACCTGAAAACCCTACATCTGGGATACAATCAGTTTCGTAGTTTGCCTGGTGAGTTGGTCAGGTTGGATGAGCTGCGGAGTATTTGGCTGGAAGGAAACTTGCTGAATGAATTTCCGCCAGTGCTTCTAGAAATGCATTATTTGGAAGTGATTGATGTAGATAGAAACCGCATTCGGCAATTTCCATCACTCACTCAACTAAGAGGACTGAAGCTGGTCATTTATGACCACAACCCTTGCGTTAATGCACCCTTAGTAGGGGAGGGTGTGAGACGGGTTGGACGCTGGGCTGACTGCtctgaagaggaagatgatgaaGCTGAAGGAAAAGTCACTGAGGCGTCCCTAGAGGTGAGATGTCAGCTTCCAGAGACAGAGTGATATGAACACTACAAATTGTGgaatatatacttatttatactATCCCACAGTATAATTTACATGTAGCAAGACACTGAACAGTAACACTTAAGTGttggtattttaaaatgttgttaaatgttGTCTGCAAGCATAAAAAAGCACAATGACACCAAGAGACAACTGCAGATTTAactgtattaaataaagtaaaaatactaaa
>XM_015605116.2
AACATAAATGAGGGAGGGCAAGCTGGATATCATCTTTGGCACTTCCAGGAGTCAGCCAGGCAAAGCTTTGAGCAAGGCAGAGGTCTAAGCCCAGtgtggagtaaaaaaaaaaacaataaatgggATGGGATAGAATGGAATTAAATGAAGGAAAGATTCTCTTCAGCTGCTTAATTTCTATTAATGAGCTCTCCTACTTCTATATCTGTTCTCCTCATGAAGGGGGCATGAAATTGGACTGGAATAATGGGAAATGTTGTTCGTGGAGCTGTGGCCTTCATTCCATCAGACCGGTGTCAGCAGTATTTGGTGGGGGACTTGAAGGAGATGCCCCATGACTGTACTGTGGATCTGAGCAGTCGTCAGCTGCGGCGCTTCCCCATTAGAGCTTGTGCCTTTAGAGAACTTGTTAAACTTTACCTTAGTGATAACCACCTGAGCAGTCTGCCACCTGAGCTCCACAACCTACAAAAACTACAACTTCTAGCTCTGGACTTCAACTGCTTTGAGGAGCTGCCATCAGTTGTTTGCAGCCTTCGGCAGCTCAATATCCTCTACCTCGGGAATAACAGACTGTACAAACTGCCAAAAGAGCTGGCCAAGCTTTCCGAACTAAAGACACTGTGGTTGGAGACCAACTGCTTTATAACATTTCCAAGTGTTGTGTGTAAACTTCCCAACCTGAAAACCCTACATCTGGGATACAATCAGTTTCGTAGTTTGCCTGGTGAGTTGGTCAGGTTGGATGAGCTGCGGAGTATTTGGCTGGAAGGAAACTTGCTGAATGAATTTCCGCCAGTGCTTCTAGAAATGCATTATTTGGAAGTGATTGATGTAGATAGAAACCGCATTCGGCAATTTCCATCACTCACTCAACTAAGAGGACTGAAGCTGGTCATTTATGACCACAACCCTTGCGTTAATGCACCCTTAGTAGGGGAGGGTGTGAGACGGGTTGGACGCTGGGCTGACTGCtctgaagaggaagatgatgaaGCTGAAGGAAAAGTCACTGAGGCGTCCCTAGAGGTGAGATGTCAGCTTCCAGAGACAGAGTGATATGAACACTACAAATTGTGgaatatatacttatttatactATCCCACAGTATAATTTACATGTAGCAAGACACTGAACAGTAACACTTAAGTGttggtattttaaaatgttgttaaatgttGTCTGCAAGCATAAAAAAGCACAATGACACCAAGAGACAACTGCAGATTTAactgtattaaataaagtaaaaatactaaa

Function

symbol description
lrrc10 Predicted to enable actin binding activity. Acts upstream of or within cardiac muscle tissue regeneration; heart contraction; and heart looping. Predicted to be active in cytoskeleton and sarcomere. Is expressed in atrium; cardiac muscle cell; cardiac ventricle; heart; and heart tube. Orthologous to human LRRC10 (leucine rich repeat containing 10).

NR:

description
leucine-rich repeat-containing protein 10-like

GO:

id name namespace
GO:0001947 heart looping biological_process
GO:0060047 heart contraction biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007246586.3 False 1210 mRNA 0.44 2 19487123 19488634
XM_015605116.2 True 1261 mRNA 0.43 2 19487123 19488636

Neighbor

gene id symbol gene type direction distance location
fnbp4 fnbp4,LOC107681673,LOC107753624,LOC107678983 coding downstream 1976 19475550 ~ 19485147 (-)
LOC103041446 LOC108436924 coding downstream 14081 19462357 ~ 19473042 (-)
ptprz1 ptprz1 coding downstream 49509 19364598 ~ 19437614 (-)
asb15 asb15 coding downstream 391334 19086893 ~ 19095789 (-)
LOC103036047 NA coding downstream 400925 19081148 ~ 19086198 (-)
washc4 kiaa1033,si:dkey-23p11.2,LOC107678984,LOC107696292 coding upstream 16414 19505050 ~ 19525749 (-)
etfbkmt etfbkmt coding upstream 80694 19569330 ~ 19572536 (-)
LOC103045635 arid3b,LOC108436938,LOC108275332,LOC107575848,LOC107752332 coding upstream 108294 19596930 ~ 19622548 (-)
LOC103046663 cox5aa,LOC103046663,LOC108436939,LOC107696286,LOC107716663,LOC107576348,LOC107678975 coding upstream 136051 19624687 ~ 19632439 (-)
LOC103046970 NA coding upstream 146489 19635125 ~ 19637652 (-)
G74928 NA non-coding downstream 68319 19325392 ~ 19418804 (-)
G74911 aass,LOC102787118 non-coding downstream 132072 19354093 ~ 19355051 (-)
G74909 aass,LOC107753626,LOC107678990,LOC107752301,LOC107698474 non-coding downstream 137112 19344945 ~ 19350011 (-)
G74910 NA non-coding downstream 145187 19279652 ~ 19341936 (-)
G74915 NA non-coding downstream 196836 19287340 ~ 19290287 (-)
G75069 NA non-coding upstream 152185 19640821 ~ 19688118 (-)
G75081 NA non-coding upstream 256928 19745564 ~ 19746445 (-)
G75092 NA non-coding upstream 310749 19799385 ~ 19799625 (-)
G75093 NA non-coding upstream 316130 19804766 ~ 19804970 (-)
G75106 NA non-coding upstream 382506 19871142 ~ 19872681 (-)
G74838 wasl,LOC105896696,LOC108275301 other downstream 414235 19070938 ~ 19072888 (-)
LOC103034453 LOC108436916,LOC107753633,LOC107659484,LOC107573489,LOC107752304,LOC108181664,LOC107598834 other downstream 478757 18992668 ~ 19008366 (-)
G74791 NA other downstream 546659 18939174 ~ 18940464 (-)
G74591 isl2,LOC105022634 other downstream 1457376 17982747 ~ 18029747 (-)
nrg4 NA other downstream 1601728 17877026 ~ 17885395 (-)
G75100 LOC108436948,LOC108275266 other upstream 371058 19859694 ~ 19865982 (-)
G75207 api5,LOC107696269,LOC107753602 other upstream 538526 20027162 ~ 20032027 (-)
hsd17b12 hsd17b12,hsd17b12a,LOC107661451,LOC107696265,LOC107573907,LOC107716735,LOC107753600 other upstream 595792 20084428 ~ 20100250 (-)
LOC103032014 maf,LOC108428434,LOC108274756,LOC102790406,LOC102298902,LOC101477682,LOC102192535,LOC101173775,LOC100702616,LOC107663990,LOC107565340 other upstream 1134005 20622641 ~ 20748208 (-)
gatd1 pddc1,LOC102788149 other upstream 1576683 21065319 ~ 21071246 (-)

Expression


Co-expression Network