LOC103045635 (arid3b,LOC108436938,LOC108275332,LOC107575848,LOC107752332)


Basic Information

Item Value
gene id LOC103045635
gene name arid3b,LOC108436938,LOC108275332,LOC107575848,LOC107752332
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 19596930 ~ 19622548 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007246595.3
GCAGTGAGTGGTAGCCCCCCTGATCGGCACTCCGGGAGCTGAGGTGAGCTCAGGCAGGCATTTCCCTTCGTCTGCCCCATCCCTCCTCTCTGTCtttacaacagaaaaaaaccCACCATCGATTTCCCCCCGCGGAGAGCCACTATTATCGGGGGACGGTAAACACTCGGGTGGATGCGAGCATTATCTATCGGAGCGGTGATCTGATCAAGCGCGGACAGCCCGGTGGAAGAGAAGAAGCGACTAGGAAGGAAGGAGGGATGGTGGACAACTCCAGCAGCGGCAGCAAGGCGCAAATGcCCATCTTATCTCAGGACAGCGTCCTGGCAGGAGTCTTTTCTCAGGCAGCGCTTGGTGGTGCATCTGGTGTCAAGCTTGAAGCTGTTATGGAACAGCTCCAAAGGCAGCAGCAAGCAAAACTAGAGATGGAACGAAAAGAGAGACACATCAGGGAGGCCCACATCCTCTACGCCCAGCAGCTGGCAGCACAGCAAGCCATCATGGCTTCAGCAAGGGCCCAGGGTACTCCACTAGGCCCTGAATTCTTCGCAAAGAGCTCCCTCGAAAGAATGCCGAAGAGCATCCAAGGCCAGCCTCAGCCCAGCAGGGTTTCTACACAAAGCAGCGTGGACTCAGTACGCGAGGAAGACTATGAGGATGAGGCAGACCGAGGAAAAGGCTCAGCAGGGGAAGATGATGAAGACGATGAGATGATGGATGGAGAGGAAGGTAGTGAGGATGAAGAAAGTGAAGGGTTGGAGTTTCTAAGGAAACAGAGTCTCGCTCTCCAGCAGGCAGGTGTGGGGGTTCCTCCATATCCTTACCCTGTCTACGCTGCTTCTCCCTCGGCTGCCAAAAAGCGTGCCCGCTCACCCCCACCAAAGGTGAAAGATGAACCAGAAGACAGCCCCTCTCCTACTGAGCAGCACTCATTCAGCACACCGAACGGTCTGGGTGACTGGAGCTTCGATGAGTCAATCAAacagAATGGGAATGCAAGTTGGAATGAAGAAAGTGATGGAGGGAGAGCAAGGGGGGAGGCCTCCAGAGACTTTGCTAAGCTTTATGAACTGGACAACGACCCTAACAGGAAGGAGTTTCTAGATGACCTTTTCCTTTTCATGCAGAAAAGAGGTACACCTGTGAATCGGATCCCCATCATGGCCAAGCAAGTCTTGGACCTCTATAAGCTCTACAAACTTGTTACAGAGAAAGGAGGACTGGTAGAAGTGATCAATAAGAAAATTTGGAGAGAGATCACCAAAGGCCTGAATCTGCCCACCTCCATCACCAGTGCAGCCTTCACCCTCCGCACACAATATATGAAGTACCTCTACCCGTATGAATGTGAGAAGAAAGGGCTCAGCTCTCCTGGTGAGCTACAAGCTGCCATTGACAGTAACCGCAGAGAGGGTCGTCGCCCTGGCTACAGTAATAGCCTTTACCGCTTTTCTCCCTCCCCCAGTGGCGGCGCCCCACACCTCCTCTCTCCTCCCAAAATGCACCTGCCAGCGTCTGGACACAACGGCTTGCAGAGCACACCTACTCCAGCCCTTAAGAAAGCAACAGTTCCTGAAGATGGTCCAGCCTCTATGTTGCCAGGTCGACTTCCCCTAGCTTTGGCTCTGGgtcaccagcagcagcagctggccCGGGCTGCAACCCTGGAGCAGCTGCGTGAAAGACTGGAGACTGGCATGGGGGCAGCAGCAATGGCTACAAGTGCTGCTGCCATGGAGGCACCAGAGAGGAAAATGGCCCGCCTGGCAGAAGAGCAGCAGAGGCTGCTGCAGCAGGCTTTCCAGCAGAACCTTCTTGCCATGGCATCGCAAGTGAACCCTGCTAACCTGCGCATGAACAGCACCAGTGCACGTGAGGAAAAGCAGGATTTATCTCTCAGTATCTCTTCAAATGGATCAGCCAGTATCACCGTGTCCATTGAGGTCAATGGGATAATTTACTCAGGTTCCTTGTATGCTCAGAAGTCCCCTGCAGCTATGCCTAACCCTGCCACAGCTACATCCATATCCCACAGCTCCACGCACAGCCCCAGCCTcgcctcttcctcctccaccacctcctctTCCTCAAAAGGCCCTGGTTCTGTGGAGCCTGCTGCTGTCTCTCCTTAGCTCCCAACCACCTGCCTAACTATGGTCTCCCTCTCCTGGAGAAGCACACCCTATCTGTGGAGAGACTTTGACCATTCAGTGGTCTGTCAAAGCCAAGTCTACCTCCTTTTGAGACCCATGAGGCTCACTTTCACTGAAAGAGGCCTTCACCCTCGAAGAGTTTAGTAACTGCTCTACCCTGTTGCAGATGGGCTCTGCTCTTTGCCACATGCCTGCTGCAAACACTCTCAGGACTTGGAAGATCATGATATTGATCAGATCCAAAACAACAAATACCTCATTTACCTCATTATCTTGAATGAAAATGCTGTTATGGGCACATCTCTGTGCTCCACATGTTTAATACCTGTACTATTACCTATGCATTTACATCCATATAATCATGTTTACAAACACCACTGCTTAACAATCATGGCAAAAATATTCTGCCAAAATCCTACAGTGGGGTTTGAacaagtgactttttttttcatcagtacATTGTTTTGTGTAAGTTTGGCCATATTTATCTTATGCACACCAACAGTAGATGTACCAGGGCTAAGTACTCTGATTGCTGTTTTGTGGATAAAtggtttttctttttgttaattttgctgaatttcaAATGGACCACAATCCCATTAAGTGTTATTTGCAGAGTTATTTTGGTTAGCAATGGGGtcaaacttttcttttaattttttattaagtatatttcTTCTTgatttgattgtggattttccATTATGTTTAGTTTCTAGATTTCCAAAAATATAAAGTTGATTTTGAAAGAGTTTCAGGTATAGATTTTGAAAAGAGTTTTGAGTAttgaatctgcagtttacacaGCTGAAAGCATACTTTTTGCTATTATTTAGACATTTTATAGACAACAGATTGGTCCAAAAGTAATGTGTACCACTGTATCAAGATATATTGTGTAGGCTTAACAGTAGAGGGGGACACCTGGTGTTCCTTAAGTCAATCATTTAGATGGCGTTGGACGATCAGTTATAGGCTCACTAATCTGGGCCTTTATTAACTTGTTATACCTGGACTATGTGGAGAAAGAGTAAGGAATTTTTTCAGATATACTGATATATCAAATTAGGTATAAAAAGGCATGAtcatgttaaaatcaaagaaatatcAGGGAATCTGTTCACTTAAGCTGTAAAAAGTTTTCTCAATAATTACTGATCTTTGACAGAAATGGCGCTTCGAGATGTTCTTGTTCCTCCCTCACTCATcattgtatttggaattttattttcatttcttcttttcttcattttcttcctcttttatctctttttataCCTTTAGACCTCAAATGCCTTTCCATATTGGAAAGCAGGTTTCTCAGGAATTTCAGGTTGATCTTTGTGGTTTTTACCTCACCACCATAATGCCTCATGTCTCAAATGAACAAGACTAGATATACCTCAGCAGGAGAAATGAAATAGCTACCTCAGAATTACCTTTGTATAATATAAGTCAGAAATTATCTCAGAATTTGCTTCATACACTAGATAAATAGTCAGATAAAGATGTTGAGTTTTATGAATGATCTCTGAAATTACCTCTTGGTAAATTTTGAAATGTTCTCAGGATAGTAGTGGAAGAAATACCtcatatgtataaatatatatagataactAATGACGGAGAACAGCTTTTAGACCATGGAATGAGGAGGATTATTTGAAGTTTATGACTTTAAAAAGAGCAAATCTCATACCGTTTGGAATATGTATTAGTTATTCTACAAAGAACATGTCTGTGGGTTTGGGGTATCTTATTTCAATTGTCAGGTCCTCTTAGTACCTGATAAATGTAAATACTGATGAATTTGAATTTTGAATTTAACTTTGTTGCATCTATATTATTTACTGAATTGAGATGAGATTGTCCCAATATCTTACTGCCATGTTACAACAGGAACAGTCTTGGGTAACAGATGTGGTCAGAaggatttttttcctttaacctcTGAAAGGAACATTCACCACTATCTGTACTTCAGTGTTTtgtgctttaaaatatttcctACAGATACTATATTCcccattttctctttttactgtatttatcagATAACTACGCAGCTAAAAAACCAAAGACCATCTCACTGTATTTTCTACTGTGCTCTCTGGTGTTCTCAATTTATTTACACATGGAGCTTGACAAAGTGGAATTAAACTCTGAGTTAATGCAAAAA
>XM_022672275.1
GCAGTGAGTGGTAGCCCCCCTGATCGGCACTCCGGGAGCTGAGGTGAGCTCAGGCAGGCATTTCCCTTCGTCTGCCCCATCCCTCCTCTCTGTCtttacaacagaaaaaaaccCACCATCGATTTCCCCCCGCGGAGAGCCACTATTATCGGGGGACGGTAAACACTCGGGTGGATGCGAGCATTATCTATCGGAGCGGTGATCTGATCAAGCGCGGACAGCCCGGTGGAAGAGAAGAAGCGACTAGGAAGGAAGGAGGGATGGTGGACAACTCCAGCAGCGGCAGCAAGGCGCAAATGcCCATCTTATCTCAGGACAGCGTCCTGGCAGGAGTCTTTTCTCAGGCAGCGCTTGGTGGTGCATCTGGTGTCAAGCTTGAAGCTGTTATGGAACAGCTCCAAAGGCAGCAGCAAGCAAAACTAGAGATGGAACGAAAAGAGAGACACATCAGGGAGGCCCACATCCTCTACGCCCAGCAGCTGGCAGCACAGCAAGCCATCATGGCTTCAGCAAGGGCCCAGGGTACTCCACTAGGCCCTGAATTCTTCGCAAAGAGCTCCCTCGAAAGAATGCCGAAGAGCATCCAAGGCCAGCCTCAGCCCAGCAGGGTTTCTACACAAAGCAGCGTGGACTCAGTACGCGAGGAAGACTATGAGGATGAGGCAGACCGAGGAAAAGGCTCAGCAGGGGAAGATGATGAAGACGATGAGATGATGGATGGAGAGGAAGGTAGTGAGGATGAAGAAAGTGAAGGGTTGGAGTTTCTAAGGAAACAGAGTCTCGCTCTCCAGCAGGCAGGTGTGGGGGTTCCTCCATATCCTTACCCTGTCTACGCTGCTTCTCCCTCGGCTGCCAAAAAGCGTGCCCGCTCACCCCCACCAAAGGTGAAAGATGAACCAGAAGACAGCCCCTCTCCTACTGAGCAGCACTCATTCAGCACACCGAACGGTCTGGGTGACTGGAGCTTCGATGAGTCAATCAAacagCTTTATGAACTGGACAACGACCCTAACAGGAAGGAGTTTCTAGATGACCTTTTCCTTTTCATGCAGAAAAGAGGTACACCTGTGAATCGGATCCCCATCATGGCCAAGCAAGTCTTGGACCTCTATAAGCTCTACAAACTTGTTACAGAGAAAGGAGGACTGGTAGAAGTGATCAATAAGAAAATTTGGAGAGAGATCACCAAAGGCCTGAATCTGCCCACCTCCATCACCAGTGCAGCCTTCACCCTCCGCACACAATATATGAAGTACCTCTACCCGTATGAATGTGAGAAGAAAGGGCTCAGCTCTCCTGGTGAGCTACAAGCTGCCATTGACAGTAACCGCAGAGAGGGTCGTCGCCCTGGCTACAGTAATAGCCTTTACCGCTTTTCTCCCTCCCCCAGTGGCGGCGCCCCACACCTCCTCTCTCCTCCCAAAATGCACCTGCCAGCGTCTGGACACAACGGCTTGCAGAGCACACCTACTCCAGCCCTTAAGAAAGCAACAGTTCCTGAAGATGGTCCAGCCTCTATGTTGCCAGGTCGACTTCCCCTAGCTTTGGCTCTGGgtcaccagcagcagcagctggccCGGGCTGCAACCCTGGAGCAGCTGCGTGAAAGACTGGAGACTGGCATGGGGGCAGCAGCAATGGCTACAAGTGCTGCTGCCATGGAGGCACCAGAGAGGAAAATGGCCCGCCTGGCAGAAGAGCAGCAGAGGCTGCTGCAGCAGGCTTTCCAGCAGAACCTTCTTGCCATGGCATCGCAAGTGAACCCTGCTAACCTGCGCATGAACAGCACCAGTGCACGTGAGGAAAAGCAGGATTTATCTCTCAGTATCTCTTCAAATGGATCAGCCAGTATCACCGTGTCCATTGAGGTCAATGGGATAATTTACTCAGGTTCCTTGTATGCTCAGAAGTCCCCTGCAGCTATGCCTAACCCTGCCACAGCTACATCCATATCCCACAGCTCCACGCACAGCCCCAGCCTcgcctcttcctcctccaccacctcctctTCCTCAAAAGGCCCTGGTTCTGTGGAGCCTGCTGCTGTCTCTCCTTAGCTCCCAACCACCTGCCTAACTATGGTCTCCCTCTCCTGGAGAAGCACACCCTATCTGTGGAGAGACTTTGACCATTCAGTGGTCTGTCAAAGCCAAGTCTACCTCCTTTTGAGACCCATGAGGCTCACTTTCACTGAAAGAGGCCTTCACCCTCGAAGAGTTTAGTAACTGCTCTACCCTGTTGCAGATGGGCTCTGCTCTTTGCCACATGCCTGCTGCAAACACTCTCAGGACTTGGAAGATCATGATATTGATCAGATCCAAAACAACAAATACCTCATTTACCTCATTATCTTGAATGAAAATGCTGTTATGGGCACATCTCTGTGCTCCACATGTTTAATACCTGTACTATTACCTATGCATTTACATCCATATAATCATGTTTACAAACACCACTGCTTAACAATCATGGCAAAAATATTCTGCCAAAATCCTACAGTGGGGTTTGAacaagtgactttttttttcatcagtacATTGTTTTGTGTAAGTTTGGCCATATTTATCTTATGCACACCAACAGTAGATGTACCAGGGCTAAGTACTCTGATTGCTGTTTTGTGGATAAAtggtttttctttttgttaattttgctgaatttcaAATGGACCACAATCCCATTAAGTGTTATTTGCAGAGTTATTTTGGTTAGCAATGGGGtcaaacttttcttttaattttttattaagtatatttcTTCTTgatttgattgtggattttccATTATGTTTAGTTTCTAGATTTCCAAAAATATAAAGTTGATTTTGAAAGAGTTTCAGGTATAGATTTTGAAAAGAGTTTTGAGTAttgaatctgcagtttacacaGCTGAAAGCATACTTTTTGCTATTATTTAGACATTTTATAGACAACAGATTGGTCCAAAAGTAATGTGTACCACTGTATCAAGATATATTGTGTAGGCTTAACAGTAGAGGGGGACACCTGGTGTTCCTTAAGTCAATCATTTAGATGGCGTTGGACGATCAGTTATAGGCTCACTAATCTGGGCCTTTATTAACTTGTTATACCTGGACTATGTGGAGAAAGAGTAAGGAATTTTTTCAGATATACTGATATATCAAATTAGGTATAAAAAGGCATGAtcatgttaaaatcaaagaaatatcAGGGAATCTGTTCACTTAAGCTGTAAAAAGTTTTCTCAATAATTACTGATCTTTGACAGAAATGGCGCTTCGAGATGTTCTTGTTCCTCCCTCACTCATcattgtatttggaattttattttcatttcttcttttcttcattttcttcctcttttatctctttttataCCTTTAGACCTCAAATGCCTTTCCATATTGGAAAGCAGGTTTCTCAGGAATTTCAGGTTGATCTTTGTGGTTTTTACCTCACCACCATAATGCCTCATGTCTCAAATGAACAAGACTAGATATACCTCAGCAGGAGAAATGAAATAGCTACCTCAGAATTACCTTTGTATAATATAAGTCAGAAATTATCTCAGAATTTGCTTCATACACTAGATAAATAGTCAGATAAAGATGTTGAGTTTTATGAATGATCTCTGAAATTACCTCTTGGTAAATTTTGAAATGTTCTCAGGATAGTAGTGGAAGAAATACCtcatatgtataaatatatatagataactAATGACGGAGAACAGCTTTTAGACCATGGAATGAGGAGGATTATTTGAAGTTTATGACTTTAAAAAGAGCAAATCTCATACCGTTTGGAATATGTATTAGTTATTCTACAAAGAACATGTCTGTGGGTTTGGGGTATCTTATTTCAATTGTCAGGTCCTCTTAGTACCTGATAAATGTAAATACTGATGAATTTGAATTTTGAATTTAACTTTGTTGCATCTATATTATTTACTGAATTGAGATGAGATTGTCCCAATATCTTACTGCCATGTTACAACAGGAACAGTCTTGGGTAACAGATGTGGTCAGAaggatttttttcctttaacctcTGAAAGGAACATTCACCACTATCTGTACTTCAGTGTTTtgtgctttaaaatatttcctACAGATACTATATTCcccattttctctttttactgtatttatcagATAACTACGCAGCTAAAAAACCAAAGACCATCTCACTGTATTTTCTACTGTGCTCTCTGGTGTTCTCAATTTATTTACACATGGAGCTTGACAAAGTGGAATTAAACTCTGAGTTAATGCAAAAA

Function

symbol description
arid3b Predicted to enable DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ARID3B (AT-rich interaction domain 3B).

NR:

description
PREDICTED: AT-rich interactive domain-containing protein 3B-like

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007246595.3 True 4335 mRNA 0.44 9 19596930 19622548
XM_022672275.1 False 4260 mRNA 0.44 8 19596930 19622548

Neighbor

gene id symbol gene type direction distance location
etfbkmt etfbkmt coding downstream 24394 19569330 ~ 19572536 (-)
washc4 kiaa1033,si:dkey-23p11.2,LOC107678984,LOC107696292 coding downstream 71181 19505050 ~ 19525749 (-)
lrrc10 lrrc10 coding downstream 108294 19487123 ~ 19488636 (-)
fnbp4 fnbp4,LOC107681673,LOC107753624,LOC107678983 coding downstream 111783 19475550 ~ 19485147 (-)
LOC103041446 LOC108436924 coding downstream 123888 19462357 ~ 19473042 (-)
LOC103046663 cox5aa,LOC103046663,LOC108436939,LOC107696286,LOC107716663,LOC107576348,LOC107678975 coding upstream 2139 19624687 ~ 19632439 (-)
LOC103046970 NA coding upstream 12577 19635125 ~ 19637652 (-)
LOC103047267 parp6,parp6b,LOC108436940,LOC108275327,LOC107753615,LOC107661437 coding upstream 20777 19643325 ~ 19660262 (-)
LOC103030119 hcn4,LOC108436942,LOC107696280,LOC107573709,LOC106530001 coding upstream 69636 19692184 ~ 19725549 (-)
LOC103021510 LOC108436943 coding upstream 107615 19730163 ~ 19749501 (-)
G74928 NA non-coding downstream 178126 19325392 ~ 19418804 (-)
G74911 aass,LOC102787118 non-coding downstream 241879 19354093 ~ 19355051 (-)
G74909 aass,LOC107753626,LOC107678990,LOC107752301,LOC107698474 non-coding downstream 246919 19344945 ~ 19350011 (-)
G74910 NA non-coding downstream 254994 19279652 ~ 19341936 (-)
G74915 NA non-coding downstream 306643 19287340 ~ 19290287 (-)
G75069 NA non-coding upstream 18273 19640821 ~ 19688118 (-)
G75081 NA non-coding upstream 123016 19745564 ~ 19746445 (-)
G75092 NA non-coding upstream 176837 19799385 ~ 19799625 (-)
G75093 NA non-coding upstream 182218 19804766 ~ 19804970 (-)
G75106 NA non-coding upstream 248594 19871142 ~ 19872681 (-)
G74838 wasl,LOC105896696,LOC108275301 other downstream 524042 19070938 ~ 19072888 (-)
LOC103034453 LOC108436916,LOC107753633,LOC107659484,LOC107573489,LOC107752304,LOC108181664,LOC107598834 other downstream 588564 18992668 ~ 19008366 (-)
G74791 NA other downstream 656466 18939174 ~ 18940464 (-)
G74591 isl2,LOC105022634 other downstream 1567183 17982747 ~ 18029747 (-)
nrg4 NA other downstream 1711535 17877026 ~ 17885395 (-)
G75100 LOC108436948,LOC108275266 other upstream 237146 19859694 ~ 19865982 (-)
G75207 api5,LOC107696269,LOC107753602 other upstream 404614 20027162 ~ 20032027 (-)
hsd17b12 hsd17b12,hsd17b12a,LOC107661451,LOC107696265,LOC107573907,LOC107716735,LOC107753600 other upstream 461880 20084428 ~ 20100250 (-)
LOC103032014 maf,LOC108428434,LOC108274756,LOC102790406,LOC102298902,LOC101477682,LOC102192535,LOC101173775,LOC100702616,LOC107663990,LOC107565340 other upstream 1000093 20622641 ~ 20748208 (-)
gatd1 pddc1,LOC102788149 other upstream 1442771 21065319 ~ 21071246 (-)

Expression


Co-expression Network