LOC103046663 (cox5aa,LOC103046663,LOC108436939,LOC107696286,LOC107716663,LOC107576348,LOC107678975)


Basic Information

Item Value
gene id LOC103046663
gene name cox5aa,LOC103046663,LOC108436939,LOC107696286,LOC107716663,LOC107576348,LOC107678975
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 19624687 ~ 19632439 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007246599.3
GGGGGCGGGATCTGTCTGAATACGGGCGGAGAAAGAAGCAGCGCTGCTGGTTTCAGCTCTCAGGGCCGCGGCCTCCTCCTCCATTCTTGCGGTACTTGATACCGTTCAGAGTCCGGTCCGCAGTCAGCCGGTGTCCCGACCGACATCATGTTCAGAGCCGCCGTCCGCCTTTCCGTCTCCGGGGCTCGGAGTTTAGCGCGGTCACGACCGCAGTATACAGCTCCTGCAGCTGCTCGCTGCTACTCTCATGGCAAACAGGAGACAGATGAAGAGTTTGATGCTCGCTGGGTCACCTACTTCAACAAGCCAGATATCGACGCCTGGGAGCTGAGGAAAGgTATGAACACTCTGATTGGATATGACCTCGTACCTGAGCCCAAGATCCTGGATGCAGCTTTGAGGGCCTGTCGGAGGTTAAATGACTTAGCCAGTGCCATCCGTATTCTTGAGGCAGTCAAGGACAAATCTGGGCCCCACAAAGAGATCTACCCCTATGTTATCCAAGAGCTCCGGCCCACGCTCGATGAGCTAGGCATTTCAACACCTGAAGAACTTGGCATTGACAAAGCATAGACTTCAACTGTTGTGAGTCTTCCGAGGACCTGTTGCTGTTGGGTCGGAGTGGACCTCTGTACTTGAAGTCTTTGCCTCGTGTCATGATGTTTGTGTTATATTTAATTGGCCTTTATTATGTTCTTTTGCTTGTAAAATATTGATGGACTTAATAAAGGGAGATATAtttactgaatcagtttgttTTTGGTCACCCAGAA

Function

symbol description
cox5aa Enables cytochrome-c oxidase activity. Acts upstream of or within embryonic organ development and spinal cord motor neuron differentiation. Predicted to be located in mitochondrial inner membrane. Predicted to be part of mitochondrial respiratory chain complex IV. Is expressed in several structures, including adaxial cell; alar plate midbrain region; immature eye; musculature system; and nervous system. Used to study ciliopathy and visceral heterotaxy. Human ortholog(s) of this gene implicated in cytochrome-c oxidase deficiency disease. Orthologous to human COX5A (cytochrome c oxidase subunit 5A).

NR:

description
cytochrome c oxidase subunit 5A, mitochondrial

GO:

id name namespace
GO:0021522 spinal cord motor neuron differentiation biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0048568 embryonic organ development biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0004129 cytochrome-c oxidase activity molecular_function

KEGG:

id description
K02264 COX5A; cytochrome c oxidase subunit 5a

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007246599.3 True 773 mRNA 0.51 5 19624687 19632439

Neighbor

gene id symbol gene type direction distance location
LOC103045635 arid3b,LOC108436938,LOC108275332,LOC107575848,LOC107752332 coding downstream 2139 19596930 ~ 19622548 (-)
etfbkmt etfbkmt coding downstream 52151 19569330 ~ 19572536 (-)
washc4 kiaa1033,si:dkey-23p11.2,LOC107678984,LOC107696292 coding downstream 98938 19505050 ~ 19525749 (-)
lrrc10 lrrc10 coding downstream 136051 19487123 ~ 19488636 (-)
fnbp4 fnbp4,LOC107681673,LOC107753624,LOC107678983 coding downstream 139540 19475550 ~ 19485147 (-)
LOC103046970 NA coding upstream 2686 19635125 ~ 19637652 (-)
LOC103047267 parp6,parp6b,LOC108436940,LOC108275327,LOC107753615,LOC107661437 coding upstream 10886 19643325 ~ 19660262 (-)
LOC103030119 hcn4,LOC108436942,LOC107696280,LOC107573709,LOC106530001 coding upstream 59745 19692184 ~ 19725549 (-)
LOC103021510 LOC108436943 coding upstream 97724 19730163 ~ 19749501 (-)
LOC103030439 ube2q2,LOC108436947,LOC107696278,LOC105015542,LOC107661444 coding upstream 130356 19762795 ~ 19772325 (-)
G74928 NA non-coding downstream 205883 19325392 ~ 19418804 (-)
G74911 aass,LOC102787118 non-coding downstream 269636 19354093 ~ 19355051 (-)
G74909 aass,LOC107753626,LOC107678990,LOC107752301,LOC107698474 non-coding downstream 274676 19344945 ~ 19350011 (-)
G74910 NA non-coding downstream 282751 19279652 ~ 19341936 (-)
G74915 NA non-coding downstream 334400 19287340 ~ 19290287 (-)
G75069 NA non-coding upstream 8382 19640821 ~ 19688118 (-)
G75081 NA non-coding upstream 113125 19745564 ~ 19746445 (-)
G75092 NA non-coding upstream 166946 19799385 ~ 19799625 (-)
G75093 NA non-coding upstream 172327 19804766 ~ 19804970 (-)
G75106 NA non-coding upstream 238703 19871142 ~ 19872681 (-)
G74838 wasl,LOC105896696,LOC108275301 other downstream 551799 19070938 ~ 19072888 (-)
LOC103034453 LOC108436916,LOC107753633,LOC107659484,LOC107573489,LOC107752304,LOC108181664,LOC107598834 other downstream 616321 18992668 ~ 19008366 (-)
G74791 NA other downstream 684223 18939174 ~ 18940464 (-)
G74591 isl2,LOC105022634 other downstream 1594940 17982747 ~ 18029747 (-)
nrg4 NA other downstream 1739292 17877026 ~ 17885395 (-)
G75100 LOC108436948,LOC108275266 other upstream 227255 19859694 ~ 19865982 (-)
G75207 api5,LOC107696269,LOC107753602 other upstream 394723 20027162 ~ 20032027 (-)
hsd17b12 hsd17b12,hsd17b12a,LOC107661451,LOC107696265,LOC107573907,LOC107716735,LOC107753600 other upstream 451989 20084428 ~ 20100250 (-)
LOC103032014 maf,LOC108428434,LOC108274756,LOC102790406,LOC102298902,LOC101477682,LOC102192535,LOC101173775,LOC100702616,LOC107663990,LOC107565340 other upstream 990202 20622641 ~ 20748208 (-)
gatd1 pddc1,LOC102788149 other upstream 1432880 21065319 ~ 21071246 (-)

Expression


Co-expression Network