LOC103024527 (fam19a5b,LOC103024527,LOC108428378,LOC107696241,LOC107753604,LOC107598818,LOC108274593)


Basic Information

Item Value
gene id LOC103024527
gene name fam19a5b,LOC103024527,LOC108428378,LOC107696241,LOC107753604,LOC107598818,LOC108274593
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 19939635 ~ 19972658 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007246616.3
agagagagagagagagagagagagagagagagagagagagagagaggaggagtgcTGCTGATGCGCACGGGGTTCATGGATCGGATACAGACACgcacagcatcagcatcagctctGGAGAGGAATATGTGCGTTTGACAGATCAGGAGGGTGAACACATCAACCCATCTTCAGCGTACAGGAGCTGATCTTTACCTTCCGGCTGGACTACATGCTTCTGTAACTTTTTGTCTAATGGAACAGATACCTGTGCGCAGACTGGGGATCTGCACAGACTCCAGTTCTccatttccatttttgcatCATGTAGTTCTGAACAACGTCTTTTAACTTTGTGTGTAAAGATTTCAGCcatagaaaacacacacagcctctcagAGCATCCTTCAACTTTTCCACCGCAGCCTCTGACCGTCCCATTGATCTTCTTGCATCTTCTTCTTAAAGGATTTGTTTGCGTCCTCTTTGTCCTTTTTTGCTCTCTGGTCTGGAGTGATGGGCgctgagtaagagagagagagtgagagagaaagagagagagagagagtggacaTGCAGCCTGTCCGGGTCGCGTGGGCGCTCGCGGCAGCAGCTGCTGCCCTTTCGCTCCTGGCTTTGTTTCAGGCACATTTTCTACGAGAAGGTCAGCTGGCAGCCGGTACATGCGAAATCATCACCCTCGACCGGGACAGCACTCAGCCGAAGAGGACCATCGCCCGGCAGACGGCCAGGTGTGCCTGCAGGAAGGGCCAGATTGCCGGCACAACCAGAGCCAGTCCGGCATGTGTAGACGCTCATATCGTGAGGAGCAGGCAGTGGTGTGAGATGATGCCCTGTTTGGATGATGAGGGCTGTGACTTATTAGTAAACAGATCAGGATGGAGATGTGCACAgcctggaggaagagtgaaaaCGACTACGGTATCCTGACGTCTGCTGGAGTCGACACTTCAGAGAGAGGCTACTGCAGAAGCACCTCTCCATCTTCAACGGCCACAGATAACATCACTATCTGATAGCGTGTCCCTCCATCTGTTCATATGATGGATGGAAGAGACTGAAGATCTGCTCCTGGTGCTTCTGTTGGTGACAGTTGTATCTCCGAACAGCATGGATGATGGGAGATGCGTGGAAACGGGTTTCATGTGGGACAATTCCAGAAATAAAGACAGGGACGCTGCTGGATGGGGCAGGAATGTGGATTTACTGACAagtgagaagaagaagagacagCAAATTAGAAGGACCGTTGAAGTTTCCAGAACATGGTCTTCTTCATTATTGTgtgatattttttacagaccaaagaaaaactgaaaggaCAGTTTATATCTGTGTGGAAAGAGTTTGGGACATAAGCTgttaatatcaaatataaatgcACAATAAATGAGGCAAACACACCAgtatacaaacatatatacacatgcaAACCCACCTACATCTGATTGTGGAGCACTGAAGGCAATAAGAGTGCTCTTAAAAGCCTGGAATTCTCTGTGTGGTTAAGTTGGTAATTTTGCTGTATTTTGAACATTAAACAGACATTTATAGAAGGCATAGAGCGCCTGATTGATGACAGGCAAAACTCTGACTAAAGaccaataaatgtattttcaaaAGTG

Function

NR:

description
protein FAM19A5-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007246616.3 True 1625 mRNA 0.47 4 19939635 19972658

Neighbor

gene id symbol gene type direction distance location
LOC103030439 ube2q2,LOC108436947,LOC107696278,LOC105015542,LOC107661444 coding downstream 167310 19762795 ~ 19772325 (-)
LOC103021510 LOC108436943 coding downstream 190134 19730163 ~ 19749501 (-)
LOC103030119 hcn4,LOC108436942,LOC107696280,LOC107573709,LOC106530001 coding downstream 214086 19692184 ~ 19725549 (-)
LOC103047267 parp6,parp6b,LOC108436940,LOC108275327,LOC107753615,LOC107661437 coding downstream 279373 19643325 ~ 19660262 (-)
LOC103046970 NA coding downstream 301983 19635125 ~ 19637652 (-)
ticrr NA coding upstream 64797 20037455 ~ 20051285 (-)
c8h11orf96 si:ch1073-281m9.1,cunh11orf96,LOC103025886,LOC107696240,LOC107661503,LOC107575890,LOC107580776 coding upstream 87728 20060386 ~ 20062075 (-)
alkbh3 alkbh3 coding upstream 100848 20073506 ~ 20081335 (-)
LOC103045029 LOC108428372 coding upstream 219867 20192525 ~ 20206698 (-)
LOC103029688 si:ch1073-174d20.1,dbndd1,LOC108428370,LOC108275320,LOC107723994,LOC107742629,LOC107559144,LOC107570651 coding upstream 270708 20243366 ~ 20253823 (-)
G75106 NA non-coding downstream 66954 19871142 ~ 19872681 (-)
G75093 NA non-coding downstream 134665 19804766 ~ 19804970 (-)
G75092 NA non-coding downstream 140010 19799385 ~ 19799625 (-)
G75081 NA non-coding downstream 193190 19745564 ~ 19746445 (-)
G75069 NA non-coding downstream 251517 19640821 ~ 19688118 (-)
G75208 api5,LOC107753602,LOC107661449 non-coding upstream 59952 20032610 ~ 20034759 (-)
LOC107197502 NA non-coding upstream 129054 20101712 ~ 20129570 (-)
G75223 NA non-coding upstream 176031 20148689 ~ 20151436 (-)
G75224 rfwd3,LOC106584535 non-coding upstream 180889 20153547 ~ 20158204 (-)
G75232 LOC108428438,LOC108274991,LOC107559147 non-coding upstream 208492 20181150 ~ 20186487 (-)
G75100 LOC108436948,LOC108275266 other downstream 73653 19859694 ~ 19865982 (-)
G74838 wasl,LOC105896696,LOC108275301 other downstream 866747 19070938 ~ 19072888 (-)
LOC103034453 LOC108436916,LOC107753633,LOC107659484,LOC107573489,LOC107752304,LOC108181664,LOC107598834 other downstream 931269 18992668 ~ 19008366 (-)
G74791 NA other downstream 999171 18939174 ~ 18940464 (-)
G74591 isl2,LOC105022634 other downstream 1909888 17982747 ~ 18029747 (-)
G75207 api5,LOC107696269,LOC107753602 other upstream 54504 20027162 ~ 20032027 (-)
hsd17b12 hsd17b12,hsd17b12a,LOC107661451,LOC107696265,LOC107573907,LOC107716735,LOC107753600 other upstream 111770 20084428 ~ 20100250 (-)
LOC103032014 maf,LOC108428434,LOC108274756,LOC102790406,LOC102298902,LOC101477682,LOC102192535,LOC101173775,LOC100702616,LOC107663990,LOC107565340 other upstream 649983 20622641 ~ 20748208 (-)
gatd1 pddc1,LOC102788149 other upstream 1092661 21065319 ~ 21071246 (-)
LOC111193105 LOC102794092,LOC108274651,LOC107571202,LOC108428364 other upstream 1296846 21269504 ~ 21273017 (-)

Expression


Co-expression Network