LOC103027908


Basic Information

Item Value
gene id LOC103027908
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 18975308 ~ 18977165 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007246627.2
atgtGCCATTTCAGTCAGTCATGTGGAGGGTCTTCTATTTACCTGTCCATCTTAATCATCTGTCTGAGCTGCTACTTCAACAATGCCTCATCACAGCCCCCTACAGCTGCTCCTCTCATTAAGGACACACCTTTTGCAATCATATGGAATGCACCCGTCGATGTGTGCAAGAACCTCAAGATCGGTTTGGACCTTTCTGCATTCCAAGCTGTCACCACACCAGCCAGTGTGCCTAACCAATTTCTCTTCCTTTTCTATACTGATAGACTTGGGCTGTACCCATATGTAGATCCTGCTACCAAGCAAGAGTACAATGGTGGTATTCCCCAAAAGGCACCCCTGAAAGCTAGCCTTAAGAAAGCCACAAGTGATATCGCTAAGTACATTCCTAACTCCACCCCTGGCTTAGCTGTAATCGACTGGGAATCATGGCGTCCACTGTGGGTCAGAAACTGGGATGCtaaacaaatatacagaaaGTTGTCCATTGATTCTGTTTTAGCACAAAATTCATCTCTGTCCACATCTATGGCCACCAATATTGCAAAGGAGCGGTTTCAGACAGCAGCCAGAGATTACATGGAAGATACCATTCAGCTGGGGATCGAACAACGTCCAGAGCAACTTTGGGGTTTTTACCTGTATCCAGAATGTTACAATTTCAACTGGAACTTTCCAGATTACACTGGAAACTGCCCACCGACTGAGGAAGCCCGTAACAATGAGCTTCTTTGGCTGTGGGAGTCCAGTACAGCTTTGTTCCCCTCCGCATACTTGCCACTTACTCTGAAAGATGACCCCAAAGCAGCACTCTTCGTCAGGGGTGTGGTAAAGGAAGCAGTGAGGGTTTCTGCCCTTCCAAAGAAAAACTACACTTCCCCAATTTACACCTATTTCCAGCCTCTTTTCCGTGATCAGAACCGAGTGTACCTGGGCCAGGAAGATCTAGTCAGGACTATCGGGGAAAGTGCAGCTTTAGGTGCATCAGGAGCAGTGCTCTGGGGTGCAAGTACAAGTTTCAACAGCAAGGAATCATGTGAAGCACTGTCTGCTTACCTGCTGACCACACTGAACCCTCACATAGCCAATGTGACCGCAGCTGCTAAACTCTGCAGCACTACTCTGTGCCAGAGTAACGGACGCTGTATCCGGAAGAACCCAAACTCAGACGACTACCTCTACCTCAACTCAGAGAATTTCAGCATTCAGAAGAGGAGAGGGAAATACGTAGCAGTTGGCACGCCTACTGTCACCGATCTCCTAAACTTTGCAGACAAATTTACCTGTCAGTGCTACACAGACCTGACATGCTCTGCTAAACTGGCCATTTCAGTTAGGAGCAGAATGGTTATTGAAGTGTGA

Function

GO: NA

KEGG:

id description
K01197 hya; hyaluronoglucosaminidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007246627.2 True 1362 mRNA 0.47 3 18975308 18977165

Neighbor

gene id symbol gene type direction distance location
LOC103034129 NA coding downstream 1995 18970412 ~ 18973313 (-)
dld dld coding downstream 350113 18619136 ~ 18625195 (-)
parp16 parp16,LOC107662480,LOC107589319,LOC107595248 coding downstream 507195 18461375 ~ 18468113 (-)
LOC103028541 apba2,LOC108436900,LOC105892347,LOC106584731,LOC106530680,LOC103462423 coding downstream 526753 18430338 ~ 18448555 (-)
duox1 duox1,LOC108436899,LOC107712499,LOC106561775 coding downstream 549214 18406321 ~ 18426094 (-)
LOC103028224 NA coding upstream 1683 18978848 ~ 18987058 (-)
LOC103035727 hyal6,LOC108436892,LOC107698319,LOC107752305,LOC105896038,LOC107573512,LOC106561028 coding upstream 46525 19023690 ~ 19046218 (-)
LOC103036047 NA coding upstream 103983 19081148 ~ 19086198 (-)
asb15 asb15 coding upstream 109728 19086893 ~ 19095789 (-)
ptprz1 ptprz1 coding upstream 387433 19364598 ~ 19437614 (-)
G74796 NA non-coding downstream 7398 18960804 ~ 18967910 (-)
G74792 gpr37,gpr37a,LOC107753714,LOC107598835,LOC105006086,LOC107752307,LOC107698235 non-coding downstream 25192 18948629 ~ 18950116 (-)
G74740 NA non-coding downstream 325537 18649439 ~ 18649771 (-)
G74735 NA non-coding downstream 335123 18637263 ~ 18640185 (-)
G74716 NA non-coding downstream 345903 18629061 ~ 18629405 (-)
G74804 NA non-coding upstream 7030 18984195 ~ 18986193 (-)
G74910 NA non-coding upstream 302487 19279652 ~ 19341936 (-)
G74915 NA non-coding upstream 310175 19287340 ~ 19290287 (-)
G74928 NA non-coding upstream 348227 19325392 ~ 19418804 (-)
G74909 aass,LOC107753626,LOC107678990,LOC107752301,LOC107698474 non-coding upstream 367780 19344945 ~ 19350011 (-)
G74791 NA other downstream 34844 18939174 ~ 18940464 (-)
G74591 isl2,LOC105022634 other downstream 945561 17982747 ~ 18029747 (-)
nrg4 NA other downstream 1089913 17877026 ~ 17885395 (-)
LOC103041134 rps27l,zgc:136826,LOC107752326,LOC107598918,LOC101156845 other downstream 2504985 16467089 ~ 16470323 (-)
LOC103046265 pkp3 other downstream 3194630 15758303 ~ 15780678 (-)
LOC103034453 LOC108436916,LOC107753633,LOC107659484,LOC107573489,LOC107752304,LOC108181664,LOC107598834 other upstream 15503 18992668 ~ 19008366 (-)
G74838 wasl,LOC105896696,LOC108275301 other upstream 93773 19070938 ~ 19072888 (-)
G75100 LOC108436948,LOC108275266 other upstream 882529 19859694 ~ 19865982 (-)
G75207 api5,LOC107696269,LOC107753602 other upstream 1049997 20027162 ~ 20032027 (-)
hsd17b12 hsd17b12,hsd17b12a,LOC107661451,LOC107696265,LOC107573907,LOC107716735,LOC107753600 other upstream 1107263 20084428 ~ 20100250 (-)

Expression


Co-expression Network