LOC103030754


Basic Information

Item Value
gene id LOC103030754
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 19772487 ~ 19786105 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007246635.2
GAACTAGCTATAGTATTAACATGTTCAGCTTGATTATGCTGAAATACTGTATTCATGTTGTGAGATGAGGGCTTATGAATGCCTCCACAAACTCGTATTTATACAATTTTTAGAGGGGGCGTGTAAATAAAAacgtgatttttttatatagttttaaatggttttaactATGTTAGTTACTTGGAAAGTTGGCTGTTGGCCCTAAATCCAAATGTCAGCGATGGGGCCATACTGGGTTGTTTGTACAGTGCACACGGGGCCTAAATAGGACCCATGTGAAATTAAGATGGGCTGTAACGATGTGGCCCGTTTTTAAATGCCCAAATGAGAAAGATGAATCTGAGTAGGAACATATGTACAAACCCAATTAGAGCCCAAGCCCACATTCCACCCATATGAATCAACCCACATCTACAAGCCACACCCTGTAATACCAGGTCTGTATGTAGCTAACTGTCAGGTATTTTAGGCAGTTTAGTATCGAAAAgttgtgtgaagtgtgtgtttgaAGGGAATTTACTTTCTCTTGCTGTTTCCTGGTTTATGCAACAGATACAGAAAAATGGACTAATTAAACTAGTTTCTCCCCATCTCTTATCATTTCCTCCACATTTGATTATTAAATAAACCTGTCCTGCTGTTTTAAGACGCACACAAGGAAGCACACTAGAGGGCACTGCTATCTTGAGTTTGAGATTAGGAAGAATTTTCTTAATTTGTGGTGAAGATATGTCCCCAGGTAGCAAAATGATTTAGTGTGACAGTTTTCCCAGAGAGTGCTGTCTTCCTCATTAGTTGTCTACTCAGCTGAGCAGCAGACAGCAGTGCTCTGTTCTAGGCTGCACATGAAGAGACTGGAATGAAGATGAAATTAGCTCTGTTCTTGCTGCTCATTGTCCTGCAGATTGAGCCCCTAAACAGCACAATCAGGCAGATCCAGCAGTGTGGAGTTCATTGCTCTAAGGGGCTGAACTGTAATGTCAAACCTTACTTGTCATTATCACGCTGCAAGAAACAGCATGACTggaccaacagcagcagcatccaTAATGTCAGCCTGTCCACTGTTGTGAGATGTGAAAAAGGAAAGTGTTCAGTCAACCTCAACATGGTCGTAAAGATGACACTTTATGATGATATCCGTGGTGTATTCATGTGTGTGCACTCTCCTGGGATGTTGGAACGCTGCCAAATTGCGAACTTTCCACACAACACTAGACAACACGCCACTGGAAAAGAGGTAGAGGTCCAGTATGACTGTTTTTCTTTCCGGCCTGGACAAGATCTGCTTGTGACACTGAACACAGTCCCCAGCTTCTGCAATAATACTTGgacacaaacatatacaattCCAGAATGTGCTGATGAAGACCTCAGGAGAACAATTTCAGAGTGCAAGACTGGAGAGCTGGCGTACACAGTAAACACTAACAGGACAGAAATTACTGTCAGGGTGCGAGAAGCTCCTGAGGATGCAGACTACAACCTTAGACTCTGCCTTAAAGGACGTATTTGCATCGGAGTAGGATCACACCACCTGATCAAAAAACAAGACTTGCACAGAAACCAGTCATTTCTATACTCCAAGGCCCTTCCTTGTTTGTGCATTGAGGGATGGCCTGCCACAACGAACGCACGCAGAACTCAAGTGTGTCCATTTAAAAGTAACATTGAGGAGTTGTGGTCAGGGGTGACCTATGACCATCAGACACAGGCTCTGTCATGGAAGCCTGCGTGTCCTGTCAAGGCAGTCTCCTCGTTGTGTCAAGCTGTTGTTCCGAAGACGTGCCTTGACTTTGGAAACATGTCACTGTCCTCTGAAAAGCATAATGTGGTGTTTTCTACAGTGGATCCACACCCACAGCTTTGCATGAAGTTCACCACTGAGGCCGGGTTTTGGATAAAGTGTCCTTTCAGTTCTGAACGTTTTCCAGGATGGAATCTGAAGGTGGCTTCCAATGCTGATGGGCACGTGGTGGAGATAGTGTCGTGGTTTCCAGCCAGGTTTGCAGTGGGTCTGTGCAAGATGTCCAGCTCTGTTACTTGTGAACTGCTTGAGGAAAGCTCGTTTTTAAATATCTCTGTGGACAGAACAAAGCCTTCAGTTGTCAACCTGTCAGCGCAGAGGTGTGACCCGAGCGTTTGCGTTCAGGTGAAGAGGATAGATGTGCAGTTCGCTGTGCAGGAACACCGATGCAACCTCCAGTGCTCTGAACAGCAGTTTGATCAGTGGAGTTACAGTGAAGCTCTGAGGAAGTATGCACTGCCACTTGTTGTATGCATTATAACACTGGTGATGGCTGTTTTGGTTGGGAATGTGACTTTGAAAGCTTGTGGTTGGGGACAACGAAAGCAGAAACCGGACAAAAGCCCCTCATGTAGGTCAGCAGCAGAAACAGAGACCCTGATCCACACGGCCAGTGAAGACATGGATACAGAGCTACGTCTGGCTTAGGTCTGTGGGTGGCCATTGTTCAGCTGCAACAGGAGCCTGCAAGTGGAGCCAccaaaaaaactataattttagCTCCTTAATCAGCTTGGCCTGGATTTTGCTCCACACTTACACATTTATGCTTTAagtattgtcactgtccaaaaaaaaaaagtttatttccatttttgtcagtttttcacatttttgtattttggtgtAATGTGAACCTGGCAGTTACATTTTAGATTGTGTCACATTTTCATAATGAATCGACCTCTAGAAACCGTGATTTAGAATACagtctttttacattaacttcatTTGAAGGTAAgcataggcctgtcatgatgaCTATTGTGATAATTGTGTTAAAcgatattattgttattttaaaacctttttatgccactgatttaataacatttaaattataatgCAATTACAGCTTGTTAAAGAAGGTGATAAATTGGGAGTTTGGGTGAttaagtcttgttttttttaatctatctcAGTTTTTCCTCTATGTGTATAAAGCTACTGTTATCCATGCATTATTGCACACCtggctaaaatattggaaaaactGAGATAGCAtccgtttgtaaacaaacacaaaacgaAATACAATGAATGATatcatcagcaaaaaaaaaaaaatcctatacaTATACTGAACGAAAAGTCAAAATCATAATTATGATGACACAATTCCCATTTTAGACAAACATTATTTTTGCCTGACAGTGACGTATGCTTAAACCCATGATAAgtagtattttattgtatctattaaaagtaataataatattaattaacaatCTAATTTCTGTATATTTACCCTTAGGCATGTAGATTAAActgcctttctctttctcttaaatACACATTGAAGATACATTGAAGATTGTCTGCTTAGAAGCGCAGATTAGAGGTGTAAGATGTTAAGATGAGAAGTATCTGTCTGTAGGTTAATATTTGTCATTATTGAATGTGTACATTAAAAAGATCATTGTTTCTAAGCTGAACATA

Function

GO: NA

KEGG:

id description
ko03022 Basal transcription factors
ko03030 DNA replication
ko03420 Nucleotide excision repair

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007246635.2 True 3466 mRNA 0.41 18 19772487 19786105

Neighbor

gene id symbol gene type direction distance location
LOC103047790 pk,LOC108436941,LOC108275437,LOC107716749 coding upstream 84377 19660273 ~ 19688110 (+)
LOC103045341 NA coding upstream 182044 19574314 ~ 19590443 (+)
amn1 amn1 coding upstream 203350 19563054 ~ 19569137 (+)
LOC103044412 NA coding upstream 211919 19540461 ~ 19560568 (+)
cnot2 cnot2,LOC108275083,LOC108436929,LOC107678985,LOC107696293 coding upstream 269066 19493922 ~ 19503421 (+)
LOC111193059 NA coding downstream 57197 19843302 ~ 19844222 (+)
LOC103024220 pim3,LOC108436897,LOC108275436,LOC107598820,LOC107573827,LOC107716739,LOC107696273 coding downstream 68493 19854598 ~ 19858835 (+)
LOC103023471 LOC108436948,LOC108275266 coding downstream 73328 19859433 ~ 19872712 (+)
prr5l prr5l,LOC107573861 coding downstream 228130 20014235 ~ 20024227 (+)
api5 api5,LOC107696269,LOC107753602,LOC107661449 coding downstream 241072 20027177 ~ 20034797 (+)
G75026 NA non-coding upstream 6722 19761774 ~ 19765765 (+)
G75017 NA non-coding upstream 39449 19732016 ~ 19733038 (+)
G74995 NA non-coding upstream 123103 19624659 ~ 19649384 (+)
G74996 arid3b,LOC108436938,LOC108275332,LOC107696285 non-coding upstream 152242 19599787 ~ 19620245 (+)
G74992 NA non-coding upstream 177246 19593565 ~ 19595241 (+)
G75033 NA non-coding downstream 13280 19799385 ~ 19799649 (+)
G75034 NA non-coding downstream 18661 19804766 ~ 19804976 (+)
G75131 NA non-coding downstream 274265 20060370 ~ 20122740 (+)
LOC111193104 NA non-coding downstream 498572 20284677 ~ 20288047 (+)
G75184 NA non-coding downstream 666082 20452187 ~ 20452452 (+)
LOC103044129 NA other upstream 234870 19527212 ~ 19537617 (+)
tmem17 tmem17,znf774,LOC107678976,LOC107753710 other upstream 310300 19459958 ~ 19462187 (+)
cadps2 NA other upstream 449712 19140149 ~ 19322775 (+)
G74832 NA other upstream 686931 19082816 ~ 19085556 (+)
LOC103029914 scamp5,scamp5a,LOC108436905,LOC103363822,LOC107395508,LOC107703195 other upstream 1293142 18470704 ~ 18479345 (+)
LOC103028745 NA other downstream 417514 20203619 ~ 20207955 (+)
G75383 morc2,LOC107754332,LOC107701074,LOC107674835 other downstream 1237151 21023256 ~ 21025128 (+)
G75391 pus7 other downstream 1302517 21088622 ~ 21096906 (+)
mov10l1 NA other downstream 1464362 21250467 ~ 21264776 (+)
LOC103028957 rfx7,LOC108428391,LOC108275305,LOC107695007,LOC107563886,LOC100538179,LOC107741823,LOC100694937 other downstream 2968868 22754973 ~ 22780959 (+)

Expression


Co-expression Network