LOC103023202


Basic Information

Item Value
gene id LOC103023202
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 7206477 ~ 7212496 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007253574.3
GTGGAGTTGATGGTGGAGTGGAGTGTGAGAGTTGCTGAATAGTGCTGAACTGGGAGCTGAGCTGTATTGGGGAGCTGAGCTGTGGGAGCGCTGGTTTATCAGTGCTGGTGGAGCAGCGCGGTTCATGCTTCAGTCAGAGCGGGCTGTGCTGAGGAAGCTGCCCAGGGATGGCCGCGGAGCTCCGGGGAGAAGAGCGGGAGGAGCGCGGGGCTCCAGCCTCTCCGCAGCGCCTCGTCTCCAGCCTGCCCTTCAGCGTGGAGGCGCTGATGAGGGACCGGGGGGCTCCGGGGGGCGGCAGGCTCCAGCCCTGCCCCGGCCCCCTCATCACCAGACCCGCCGCGCTCCTCCACCCACGACCCTCCGGACCCTCCTCCCCGGTGAAGTCCGAGTCTTCGGATCAAGATGATGCTTCCTGGCTGATGAAGTCCTCGTGCGCGTCTCCTCCACCACGTCAGTTGAGTCCGGCCACGTGTTCCCTCAGAAAACACAAGACGAATCGCAAGCCACGAACCCCCTTCACCACCAGTCAGCTCCTGGCGCTGGAGCGGAAGTTCCGGCAGAAGCAGTACCTGTCCATCGCAGAGCGGGCGGAGTTCTCCAGCTCTCTCTGTCTGACCGAGACTCAGGTGAAGATATGGTTCCAGAACCGACGAGCCAAAGCCAAGCGTCTGCAGGAGGCGGAAATGGAGAAACTGAAAATGGCTGGTAAACCTATGCTGCACTCGGGCCTCTCTTTACCGTTCCCCCTCGGCGCACAGCCGCaggcagcggcggcagcgctcCTGTACGGACACTCGGGACAGTTCCCCTTCCACAGATACATGCTGCCCATGCCTCCACTGGGGATGTACTCCTCTCCTGCCACCTATAACATGTATCACCTGTCCTGAGAGGCAGCTGGAAGAAGAAGGATTCTTTGCTCAGACTGAGACTGGTGGACTGACTGGTTCTGATCAGTGGTGCCTAAACATTAATACGAGTGGCGAGTGCCAGGTGACAGGTGCTCAGAAAaccacaaaagtgtccacaTGTAATGTATCTCCATTGATACCAGCTTTAAACAACTGGTGCCTCAAACAAAAGGTCTTAATTAATAGACCAAAGTCTGGGGAGACCTTTCCTGAATGCACCTTATTCTGAAGACTATGCAAGTTCAGATGCTGGATATTCTGAACTGATACAGTACTTGGTTGAGGATGGAATTGGGTGGGCTGAAGATGAGCAGTGATATCTGATAGGTCTGGTATCACTTTgtccctgtttacacctggttacTTTATGCGATTAGTATATGGATTGTGTCCTGGTAAGAGTTTagccacatgcatttacacttggtGGTGATCAAATGTGTTGCCAGTTAGTCCGATTTGAATCTGTTTGCAGGGGGTTGGacaaaatatgcaaattaatcagGTTTGCATTGGAAAGACAGAAGTAGGGCTTCACAGTGTATTGTTTTAGCATCAATATCACAATGTGCacatgcacaatagtcacattgcTGCTTAGAACAAAGACAAATTCGAACTTTTCTCATTTTACACTATCAACCagattattgattatattcacataatatatcatttattttactcaaatcatTGATGCACAgacacttaataataatataaaatgatgGATCAGGGAATTTTGGGAAATTTGTTAAAATCCttgtatttgttatttgttgtaatattgcaatgtatatcgcaaaacaacaaaatatcacaatgtattttttttcccaatatcaAGCTGCCTTAGATGAAGGTGTTTGCACTGCTGTTATTGAGAGCCTGTTAATTAGACACCTGGCATTAACATGCAGTTTTGATGAAAGGATCACATTCTGATTTCATTTGTCCACATAAAAAGCCAGGTGTGAACACTTCCAAGGCTCCAATCTAGATTCCAGATTACAATACAATCAT

Function

GO: NA

KEGG:

id description
K09341 MSX; homeobox protein MSX

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007253574.3 True 1934 mRNA 0.49 2 7206477 7212496

Neighbor

gene id symbol gene type direction distance location
LOC103023840 cpeb4,LOC108430986 coding upstream 32929 7139036 ~ 7173548 (+)
bnip1 bnip1,bnip1a,LOC108430943,LOC107598374,LOC107756689,LOC105024416 coding upstream 266115 6933390 ~ 6940362 (+)
LOC103042411 LOC108430989 coding upstream 487449 6678596 ~ 6719028 (+)
LOC103026234 NA coding upstream 572602 6605304 ~ 6633875 (+)
LOC103027224 LOC103027224,LOC108430945,LOC108274535,LOC107715168,LOC107678618,LOC103354395 coding upstream 646742 6541416 ~ 6559735 (+)
LOC103027052 LOC108430977 coding downstream 400216 7612712 ~ 7652490 (+)
LOC103027348 LOC103027348,LOC108430938 coding downstream 459062 7671558 ~ 7674663 (+)
mars2 mars2 coding downstream 507384 7719880 ~ 7725813 (+)
spock1 spock1,LOC107747099,LOC107655663 coding downstream 1227641 8440137 ~ 8641348 (+)
LOC103031395 etf1,LOC108430956,LOC108275025 coding downstream 1462353 8674849 ~ 8687469 (+)
G71805 NA non-coding upstream 105752 7061692 ~ 7100725 (+)
G71810 NA non-coding upstream 148202 7057734 ~ 7058275 (+)
G71808 NA non-coding upstream 153153 7053023 ~ 7053324 (+)
G71787 NA non-coding upstream 334113 6872148 ~ 6872364 (+)
G71747 adra2da,LOC108430987,LOC105904584 non-coding upstream 338073 6867048 ~ 6868404 (+)
G71858 NA non-coding downstream 93663 7306159 ~ 7306542 (+)
G71859 NA non-coding downstream 97286 7309782 ~ 7311864 (+)
G71878 kif3a,LOC107598362 non-coding downstream 212208 7424704 ~ 7441750 (+)
G71891 NA non-coding downstream 260365 7472861 ~ 7473404 (+)
G71892 NA non-coding downstream 264970 7477466 ~ 7477724 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other upstream 320936 6881587 ~ 6885541 (+)
G71682 LOC108430946,LOC108416517 other upstream 667683 6525641 ~ 6538794 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other upstream 1249458 5871090 ~ 5957019 (+)
LOC103037414 NA other upstream 1527603 5672718 ~ 5678874 (+)
G71414 gstp1 other upstream 1700839 5499908 ~ 5505638 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other downstream 1656632 8869128 ~ 9036026 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other downstream 1930403 9142899 ~ 9149419 (+)
LOC103043718 LOC103043718,LOC108442465 other downstream 2756010 9968506 ~ 9970042 (+)
G72621 NA other downstream 2866083 10078579 ~ 10082140 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other downstream 3060423 10272919 ~ 10626964 (+)

Expression


Co-expression Network