bnip1 (bnip1,bnip1a,LOC108430943,LOC107598374,LOC107756689,LOC105024416)


Basic Information

Item Value
gene id bnip1
gene name bnip1,bnip1a,LOC108430943,LOC107598374,LOC107756689,LOC105024416
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 6933390 ~ 6940362 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007253581.3
AGTGCGGAGCAGTGCGTGGAGCTGCGGGTCTCTCCAGCGCTGCAGACATGGCTGATGTCCACGTCCGAATATGTGAACAAGAGATTATTAAATATGATCTGGAGATTAAAGCTCTGATACAGgaTATCAGTGAGTGCACAGGTCCACACAATGAACTGACTGAGCTGAACTGCAAAGTGAAGGAAAGGTTCAGCCGTCTCCGGCAGAGGATACAGGATCTGGAGCAGATGGGTAAGGAGCAGGATAAGGAATCGGATAAGCAGGTCTTACTCAAAGAGGTGGAGGCCCATCGTAAACAGATGCTTAGTAATCAGACAGCATGGAGGAAGGCCAATCTGGCCAGTAACCTGGCCATCGATAAGCTGGAAAAAGAAGATCTGCTGAATGTTGGTGGCACTGGAGCGAGGCAGAGAAAGATGACTAAAGAGAGCCTGGCCCAGACGTCCAGTGACATCACAGAGAGCCTGATGAGCATCAGCAGGATGATGTCGCAGCaggtgaagcagagtgaggagACCATTAGCACTTTGTccACTTCTTCAAGAACGGTGCTGGAGACCAATGAAGAGTTTAAGGCCATGACTGGGACCATACAGCTGGGGAGAAAACTCATCACCAAATACAACCGGCGGGAGCTCACAGACAAGCTGCTCATCTTTCTGGCCCTGGCACTCTTTCTGGCCACTGTTCTGTACATCCTGAAGAAAAGACTGTTCCCTTTCCTCTGACCAGATCACCCTTCACACACTGACCTGCAGAGCTCCAACACTATGTGACACTTTTCCAGAAACAGGTTATATTAAAGTGGACTGAAGTGCCTCAACAGTGGATATCCACCATTAAACAACTGACTTGCACCCTTAA

Function

symbol description
bnip1a Enables protein heterodimerization activity. Predicted to be involved in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Located in endoplasmic reticulum. Is expressed in head; optic cup; and retina. Orthologous to human BNIP1 (BCL2 interacting protein 1).
bnip1 Enables SNAP receptor activity. Involved in endoplasmic reticulum membrane fusion. Acts upstream of or within apoptotic process. Located in endoplasmic reticulum membrane; mitochondrial membrane; and nuclear envelope. Part of SNARE complex. Biomarker of Down syndrome.

NR:

description
vesicle transport protein SEC20

GO: NA

KEGG:

id description
K08497 SEC20; protein transport protein SEC20

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007253581.3 True 864 mRNA 0.49 6 6933390 6940362

Neighbor

gene id symbol gene type direction distance location
LOC103042411 LOC108430989 coding upstream 214362 6678596 ~ 6719028 (+)
LOC103026234 NA coding upstream 299515 6605304 ~ 6633875 (+)
LOC103027224 LOC103027224,LOC108430945,LOC108274535,LOC107715168,LOC107678618,LOC103354395 coding upstream 373655 6541416 ~ 6559735 (+)
LOC103042719 rbm22,LOC108430993,LOC102796909,LOC107758467 coding upstream 412919 6509961 ~ 6520471 (+)
LOC103043030 LOC108430994,LOC108274927 coding upstream 424372 6472178 ~ 6509018 (+)
LOC103023840 cpeb4,LOC108430986 coding downstream 198674 7139036 ~ 7173548 (+)
LOC103023202 NA coding downstream 266115 7206477 ~ 7212496 (+)
LOC103027052 LOC108430977 coding downstream 672350 7612712 ~ 7652490 (+)
LOC103027348 LOC103027348,LOC108430938 coding downstream 731196 7671558 ~ 7674663 (+)
mars2 mars2 coding downstream 779518 7719880 ~ 7725813 (+)
G71787 NA non-coding upstream 61026 6872148 ~ 6872364 (+)
G71747 adra2da,LOC108430987,LOC105904584 non-coding upstream 64986 6867048 ~ 6868404 (+)
LOC111193077 NA non-coding upstream 271387 6639666 ~ 6662003 (+)
G71628 NA non-coding upstream 587675 6345234 ~ 6345715 (+)
G71613 NA non-coding upstream 775972 6153881 ~ 6157418 (+)
G71808 NA non-coding downstream 112661 7053023 ~ 7053324 (+)
G71810 NA non-coding downstream 117372 7057734 ~ 7058275 (+)
G71805 NA non-coding downstream 121330 7061692 ~ 7100725 (+)
G71858 NA non-coding downstream 365797 7306159 ~ 7306542 (+)
G71859 NA non-coding downstream 369420 7309782 ~ 7311864 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other upstream 47849 6881587 ~ 6885541 (+)
G71682 LOC108430946,LOC108416517 other upstream 394596 6525641 ~ 6538794 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other upstream 976371 5871090 ~ 5957019 (+)
LOC103037414 NA other upstream 1254516 5672718 ~ 5678874 (+)
G71414 gstp1 other upstream 1427752 5499908 ~ 5505638 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other downstream 1928766 8869128 ~ 9036026 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other downstream 2202537 9142899 ~ 9149419 (+)
LOC103043718 LOC103043718,LOC108442465 other downstream 3028144 9968506 ~ 9970042 (+)
G72621 NA other downstream 3138217 10078579 ~ 10082140 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other downstream 3332557 10272919 ~ 10626964 (+)

Expression


Co-expression Network