LOC103029834 (LOC108430996)


Basic Information

Item Value
gene id LOC103029834
gene name LOC108430996
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 6353639 ~ 6372363 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007253595.3
AGCGCACAGCCTGCCTCTGTTATCATTTCCCCATCCCAGGATGGGGATTAGCAGGTGACAGCAGCTATTCAGAAACCGCACTGCCATCAGCATCATCTCTGCTCTCTAATCACCCCTCAGTCTGCCTGCAGACCGCCCGACACGCAGGATGTACTCGCTGGACTACGACGAGGTGACCTCCTTCCTGGGGGACTGGGGTCCGTTTCAGGTGACTATCTTCATCCTGCTCAGCCTCAGCACCGTGCCCAACGGATACACCGGCATGGCCATGGTGTTCCTCGCAGACACACCCAGCTACCGGTGTAGAACCTCCCACTGGAACGGGAGCGCTGCCAGCCTGGAGCACACCTGGGGAACCTGCTCTCAGGTGCCAGCCCTGAATGGCAGCAGCAACGGCACAGGGCTGTGTGTGGACGGCTGGGAGTACAGCACTGAACGCTATGAGTCTACTATAGTCACTGAGTGGGACCTGGTGTGCGAAAATTCCTGGAAGGTGCCTTTCAGTCTGTCCATCTTCTTCCTGGGCGTGCTGAGTGGATCCTTCGTGTCGGGAGAGCTGTCTGACAGGTTCGGACGTAAGGTGGTTCTATTTGCCACTATGGCCATCCAGACCCTGTCCAGTTTGATCCAGGTGACCTCCGTTAGCTGGGAgatgttctgtgtgtttttcttcctCACTGGCATCGGGCAGATCTCCAACTACATGGCAGCCTTTGTCCTAGGCTGTGAACTGCTGGGGAAGAATTTGCGTGTGGTTTATTCAGTTCTGGGCACCTGTGTGTTTTATGCACTGGGCTATGCCCTCCTCCCCCTCTGTGCTTATTTGTTAAGGAGCTGGAGGCTGCTGCTGACTGTCCTCTCTCTGCCTGGCCTACTCTACATACCCCTCTGGTGGTTTATTCCAGAGTCTCCACGCTGGCTGCTGGCTAAAGGCCGGGTCCAAGAAGCTGAGGACATCATTAGAGCAGCAGCCAGGAGAAATGGCATCACTCCTCCTGAGGTCATCTTCAAGGGTTCGGACTTTCTGCTCTCTGAGAAGAGTCGGGCCAAAAACTCTGATGTCTCCTACACATACATGGACCTAATCCGGACCCCAAAGATGAGGCACATAACTCTGCTCAACGGTGTTGTATGGtttatcatcaccatcactTACTTCGGCTTGTCTCTGAGCACCCCTAACATGAATGGAGACCCGTATCTGAACTGCCTGCTCTCTGCTCTGATGGAGATCACTGCTTATGTTCTGGCCTGGattctgctgaagctgctgcccAGGAGAGCGCTCATCACTGGCCCGCTGCTTTCCGCTGGCCTGGTTCTGCTGCTAATCCATGTTGTACCTCCAGatTACAGTGGGGTGACTGTGGCTCTGGCTATGGGGGCCAAGCTGGGGGTCACTGCAGCGTTCTCCGTGCTCTATATCTCAGCGGTGGAGCAGTTCCCCACCGTGGTGCGGGGCATGGGGATGGGCGTCTGCTCAATGTGCTCAAAAACCGGCAGCACGCTCGCTCCTTTCTTCCCCTACTTCGGTCACTATGATCGGATCCTGCCCTACATTCTGATGGGGGCGCTGACCGTGTTAGCTGGGCTGCTGAGCATTCTGATGCCAGAAACTCGAGGCTCGCCCCTGCCTGAGGACCTCTCGCAAGTGCAGACTCTTAACTGGTGCTGTGGCTGCTGTAGACCAGCATGTTCAAGAAGAAGCTGTAAGACTGAGAAGGCACACAAGCTTCCGCCAGCTGTGTGATTCCATGTACACTACATACCTCATACGTAGATAGTATAAAACTTGACTTTGGTACACTGAAAAAAGCAATACATTTAGATTGACATTCAAATGTGTGAATCATTATATGGTCTTATATTCATTATAGAAGTCTTAAATAGACCATATTAAGTct
>XM_007253596.3
CTGAGCGCACAGCCTGCCTCTGTTATCATTTCCCCATCCCAGGATGGGGATTAGCAGGTGACAGCAGCTATTCAGAAACCGCACTGCCATCAGCATCATCTCTGCTCTCTAATCACCCCTCAGTCTGCCTGCAGACCGCCCGACACGCAGGATGTACTCGCTGGACTACGACGAGGTGACCTCCTTCCTGGGGGACTGGGGTCCGTTTCAGGTGACTATCTTCATCCTGCTCAGCCTCAGCACCGTGCCCAACGGATACACCGGCATGGCCATGGTGTTCCTCGCAGACACACCCAGCTACCGGTGTAGAACCTCCCACTGGAACGGGAGCGCTGCCAGCCTGGAGCACACCTGGGGAACCTGCTCTCAGGTGCCAGCCCTGAATGGCAGCAGCAACGGCACAGGGCTGTGTGTGGACGGCTGGGAGTACAGCACTGAACGCTATGAGTCTACTATAGTCACTGAGTGGGACCTGGTGTGCGAAAATTCCTGGAAGGTGCCTTTCAGTCTGTCCATCTTCTTCCTGGGCGTGCTGAGTGGATCCTTCGTGTCGGGAGAGCTGTCTGACAGGTTCGGACGTAAGGTGGTTCTATTTGCCACTATGGCCATCCAGACCCTGTCCAGTTTGATCCAGGTGACCTCCGTTAGCTGGGAgatgttctgtgtgtttttcttcctCACTGGCATCGGGCAGATCTCCAACTACATGGCAGCCTTTGTCCTAGGCTGTGAACTGCTGGGGAAGAATTTGCGTGTGGTTTATTCAGTTCTGGGCACCTGTGTGTTTTATGCACTGGGCTATGCCCTCCTCCCCCTCTGTGCTTATTTGTTAAGGAGCTGGAGGCTGCTGCTGACTGTCCTCTCTCTGCCTGGCCTACTCTACATACCCCTCTGGTGGTTTATTCCAGAGTCTCCACGCTGGCTGCTGGCTAAAGGCCGGGTCCAAGAAGCTGAGGACATCATTAGAGCAGCAGCCAGGAGAAATGGCATCACTCCTCCTGAGGTCATCTTCAAGGGTTCGGACTTTCTGCTCTCTGAGAGTCGGGCCAAAAACTCTGATGTCTCCTACACATACATGGACCTAATCCGGACCCCAAAGATGAGGCACATAACTCTGCTCAACGGTGTTGTATGGtttatcatcaccatcactTACTTCGGCTTGTCTCTGAGCACCCCTAACATGAATGGAGACCCGTATCTGAACTGCCTGCTCTCTGCTCTGATGGAGATCACTGCTTATGTTCTGGCCTGGattctgctgaagctgctgcccAGGAGAGCGCTCATCACTGGCCCGCTGCTTTCCGCTGGCCTGGTTCTGCTGCTAATCCATGTTGTACCTCCAGatTACAGTGGGGTGACTGTGGCTCTGGCTATGGGGGCCAAGCTGGGGGTCACTGCAGCGTTCTCCGTGCTCTATATCTCAGCGGTGGAGCAGTTCCCCACCGTGGTGCGGGGCATGGGGATGGGCGTCTGCTCAATGTGCTCAAAAACCGGCAGCACGCTCGCTCCTTTCTTCCCCTACTTCGGTCACTATGATCGGATCCTGCCCTACATTCTGATGGGGGCGCTGACCGTGTTAGCTGGGCTGCTGAGCATTCTGATGCCAGAAACTCGAGGCTCGCCCCTGCCTGAGGACCTCTCGCAAGTGCAGACTCTTAACTGGTGCTGTGGCTGCTGTAGACCAGCATGTTCAAGAAGAAGCTGTAAGACTGAGAAGGCACACAAGCTTCCGCCAGCTGTGTGATTCCATGTACACTACATACCTCATACGTAGATAGTATAAAACTTGACTTTGGTACACTGAAAAAAGCAATACATTTAGATTGACATTCAAATGTGTGAATCATTATATGGTCTTATATTCATTATAGAAGTCTTAAATAGACCATATTAAGTct

Function

NR:

description
PREDICTED: solute carrier family 22 member 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007253595.3 False 1904 mRNA 0.53 10 6353642 6372363
XM_007253596.3 True 1904 mRNA 0.53 10 6353639 6372363

Neighbor

gene id symbol gene type direction distance location
trappc11 trappc11,LOC107587085,LOC107731725,LOC107758539,LOC107559294 coding upstream 8941 6318320 ~ 6344698 (+)
LOC103031423 NA coding upstream 62255 6272216 ~ 6291384 (+)
trnaa-agc_15 NA coding upstream 315891 6037676 ~ 6037748 (+)
trnaa-agc_14 NA coding upstream 316765 6036802 ~ 6036874 (+)
LOC103031741 NA coding upstream 342238 6008561 ~ 6011401 (+)
LOC103028894 stox2b,LOC108430995,LOC108274926,LOC107680916,LOC107758540 coding downstream 2186 6374549 ~ 6462450 (+)
LOC103043030 LOC108430994,LOC108274927 coding downstream 99815 6472178 ~ 6509018 (+)
LOC103042719 rbm22,LOC108430993,LOC102796909,LOC107758467 coding downstream 137598 6509961 ~ 6520471 (+)
LOC103027224 LOC103027224,LOC108430945,LOC108274535,LOC107715168,LOC107678618,LOC103354395 coding downstream 169053 6541416 ~ 6559735 (+)
LOC103026234 NA coding downstream 232941 6605304 ~ 6633875 (+)
G71628 NA non-coding upstream 7924 6345234 ~ 6345715 (+)
G71613 NA non-coding upstream 196221 6153881 ~ 6157418 (+)
G71611 NA non-coding upstream 266652 6086574 ~ 6086987 (+)
G71608 brd8,LOC107758534 non-coding upstream 316980 6032185 ~ 6036659 (+)
G71567 NA non-coding upstream 335536 5966554 ~ 6018103 (+)
LOC111193077 NA non-coding downstream 267303 6639666 ~ 6662003 (+)
G71747 adra2da,LOC108430987,LOC105904584 non-coding downstream 494685 6867048 ~ 6868404 (+)
G71787 NA non-coding downstream 499785 6872148 ~ 6872364 (+)
G71808 NA non-coding downstream 680660 7053023 ~ 7053324 (+)
G71810 NA non-coding downstream 685371 7057734 ~ 7058275 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other upstream 396620 5871090 ~ 5957019 (+)
LOC103037414 NA other upstream 674765 5672718 ~ 5678874 (+)
G71414 gstp1 other upstream 848001 5499908 ~ 5505638 (+)
G71247 NA other upstream 1373628 4956298 ~ 4980011 (+)
G71682 LOC108430946,LOC108416517 other downstream 153278 6525641 ~ 6538794 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other downstream 509224 6881587 ~ 6885541 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other downstream 2496765 8869128 ~ 9036026 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other downstream 2770536 9142899 ~ 9149419 (+)
LOC103043718 LOC103043718,LOC108442465 other downstream 3596143 9968506 ~ 9970042 (+)

Expression


Co-expression Network