hars (hars,LOC106611772,LOC107660169)


Basic Information

Item Value
gene id hars
gene name hars,LOC106611772,LOC107660169
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 6293684 ~ 6315841 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007253597.3
GTTGTGCGTGTGTGACGTTTTTTGTGAGGGACCGGTCCTGCGGGGAGCTGAGAGAGCAGCACCATGGCGGATAAAGCGCAGATTCAAGAAGCCATTAAAGTTCAGGGGGAGGTGGTGAGGAAACTGAAGAGCGATAAAGCGAGTAAAGATCAGTGATAGGGTTGCTCACCACTTTTCTCCTGTTCTTCCTGCTTGTTGCTGCGGATACTGCCTCCATACCTGGGCTCATCGTCTTCATCACCTTCATCGTCTTCATCATCTTCCGCTGAATTGATGTTGGAACTGCTGCTGTGATTTTGCTGTTGGACTGCCGGCTCATTCCCCTGGACTGGGATTGGAATTGGGCCTCTGCTGTGTGCACTGACTTTTTGGGGCCTCCTGATATGTGGACTGTGCTGCTGTGTTCCTGAACTGTGTGCTTTGTGTTTGTGGACTGAAACATGGCTTCTCTGGGGCTGGCATGTGTGCGTCTCTGTGCTGGACTGACTGGACGACATGCTGTACCGTGCCTCCGCTCTCTGCGCTACCTCTCTGGAATGACTGTGTCTCAGATTGACGAGGAAGTTGCCAAACTGCTACAGCTGAAGGCACAGCTCGGAGGAGACGATGGCAAACACACATTTGTTCTCAAAACTGCCAAGGGGACCAGAGACTACAACCCTAAACAGATGGCCATCAGAGAGAAGGtcttcaacaccatcatcagcTGCTTTAAACGCCATGGTGCTGAAACCATCGACACCCCAGTCTTTGAGCTCAAGGAAACTCTGACGGGGAAGTATGGCGAGGACTCCAAACTCATCTATGATCTCAAGGACCAGGGAGGAGAGCTGCTATCTTTAAGATACGACTTAACTGTGCCCTTCGCCCGTTACCTGGCCATGAACAAAATCACAAACATCAAGCGCTACCACATCGCTAAAGTGTACCGCAGAGACAACCCTGCCATGACTCGGGGCCGCTACAGGGAGTTTTACCAGTGTGATTTCGACATTGCAGGTCAGTACGACCCGATGATCCCGGATGCAGAGTGTTTGAAAATCGTTTACGAGATCCTCAGTGAACTGGACCTGGGAGACTTCCACATTAAGGTGAATGACAGACGTATCCTGGATGGGATGTTTGCAGTGTGTGGAGTTCCAGATGACAAGTTCCGCACCATCTGTTCAACTGTGGACAAATTGGACAAGaTGCCGTGGGAGGAAGTGAAGAATGAGATGGTGAAGGAGAAAGGCCTGTCTGAGGAAGCGGCGGATCAGATTGGAGAGTACGTCAGCATGCAGGGTGGGATGGACCTGGCGGAGAGGCTGCTCCAGGACCCCAAGCTTTCCCAGAGCAAGCAGGCGTGCGCCGGACTCACGGACATGAAGCAGCTCTTTAGCTACCTGCAGCTCTTCCAGGTCACAGACAAGGTGGTGTTTGACCTGAGTCTGGCGCGTGGGTTAGATTACTACACTGGTGTGATCTACGAGGCCGTGCTGTGCCAGACGCTTCAGCCTCCGACCCCAGCTCCCGCAGAGCAGAACGGGGCAGTGTCCGGAGACGAGGCGGGGGTCAGCGTGGGCAGTGTGGCCGGCGGAGGCCGTTATGATGGTTTAGTGGGCATGTTTGACCCTAAGGGCAGGAAAGTGCCCTGTGTGGGGGTCAGCATCGGCATCGAGAGAATCTTCTCCATCATGGAGCAGAAGGCTGAGCTGTCTGCAGAGAAAGTGCgcaccacagaaacacaggtCCTGGTAGCCTCAGCACAGAAGAACCTTCTGGAAGAAAGACTCAAACTAACCGCTGAGCTTTGGAACGCAGGAATTAAGGCTGAAGTGTTGTATAAGAAGAACCCAAAGCTGCTGACTCAGCTGCAGCACTGTGAGGAGACGGGTATCCCTCTGGTGGCAATTTTGGGGGAGCAGGAGCTCAAAGATGGAGTCGTCAAACTGCGCAATGTGGCCACCCGAGATGAGGTGGATGTGTCGAGGGCAGAGCTGGTTGAAGAGATCAAGAAAAGGACATCAGAGTCTTAGATCTGTCTATTCTTCAGCAACTTCCCAGAATTCAACATTTTCAGACTTTCTCATTGCTTACAAGAGCCAGACATGGTATAACCTAGCCTTCGTTCCATTCTGTTACCTGCCTGTaccaaaataaacttaaattaaacacaTCAAATAAACGTGCTGTCCCTTCAGA
>XM_007253598.3
GTGTGACGTTTTTTGTGAGGGACCGGTCCTGCGGGGAGCTGAGAGAGCAGCACCATGGCGGATAAAGCGCAGATTCAAGAAGCCATTAAAGTTCAGGGGGAGGTGGTGAGGAAACTGAAGAGCGATAAAGCGAGTAAAGATCAGATTGACGAGGAAGTTGCCAAACTGCTACAGCTGAAGGCACAGCTCGGAGGAGACGATGGCAAACACACATTTGTTCTCAAAACTGCCAAGGGGACCAGAGACTACAACCCTAAACAGATGGCCATCAGAGAGAAGGtcttcaacaccatcatcagcTGCTTTAAACGCCATGGTGCTGAAACCATCGACACCCCAGTCTTTGAGCTCAAGGAAACTCTGACGGGGAAGTATGGCGAGGACTCCAAACTCATCTATGATCTCAAGGACCAGGGAGGAGAGCTGCTATCTTTAAGATACGACTTAACTGTGCCCTTCGCCCGTTACCTGGCCATGAACAAAATCACAAACATCAAGCGCTACCACATCGCTAAAGTGTACCGCAGAGACAACCCTGCCATGACTCGGGGCCGCTACAGGGAGTTTTACCAGTGTGATTTCGACATTGCAGGTCAGTACGACCCGATGATCCCGGATGCAGAGTGTTTGAAAATCGTTTACGAGATCCTCAGTGAACTGGACCTGGGAGACTTCCACATTAAGGTGAATGACAGACGTATCCTGGATGGGATGTTTGCAGTGTGTGGAGTTCCAGATGACAAGTTCCGCACCATCTGTTCAACTGTGGACAAATTGGACAAGaTGCCGTGGGAGGAAGTGAAGAATGAGATGGTGAAGGAGAAAGGCCTGTCTGAGGAAGCGGCGGATCAGATTGGAGAGTACGTCAGCATGCAGGGTGGGATGGACCTGGCGGAGAGGCTGCTCCAGGACCCCAAGCTTTCCCAGAGCAAGCAGGCGTGCGCCGGACTCACGGACATGAAGCAGCTCTTTAGCTACCTGCAGCTCTTCCAGGTCACAGACAAGGTGGTGTTTGACCTGAGTCTGGCGCGTGGGTTAGATTACTACACTGGTGTGATCTACGAGGCCGTGCTGTGCCAGACGCTTCAGCCTCCGACCCCAGCTCCCGCAGAGCAGAACGGGGCAGTGTCCGGAGACGAGGCGGGGGTCAGCGTGGGCAGTGTGGCCGGCGGAGGCCGTTATGATGGTTTAGTGGGCATGTTTGACCCTAAGGGCAGGAAAGTGCCCTGTGTGGGGGTCAGCATCGGCATCGAGAGAATCTTCTCCATCATGGAGCAGAAGGCTGAGCTGTCTGCAGAGAAAGTGCgcaccacagaaacacaggtCCTGGTAGCCTCAGCACAGAAGAACCTTCTGGAAGAAAGACTCAAACTAACCGCTGAGCTTTGGAACGCAGGAATTAAGGCTGAAGTGTTGTATAAGAAGAACCCAAAGCTGCTGACTCAGCTGCAGCACTGTGAGGAGACGGGTATCCCTCTGGTGGCAATTTTGGGGGAGCAGGAGCTCAAAGATGGAGTCGTCAAACTGCGCAATGTGGCCACCCGAGATGAGGTGGATGTGTCGAGGGCAGAGCTGGTTGAAGAGATCAAGAAAAGGACATCAGAGTCTTAGATCTGTCTATTCTTCAGCAACTTCCCAGAATTCAACATTTTCAGACTTTCTCATTGCTTACAAGAGCCAGACATGGTATAACCTAGCCTTCGTTCCATTCTGTTACCTGCCTGTaccaaaataaacttaaattaaacacaTCAAATAAACGTGCTGTCCCTTCAGA

Function

symbol description
hars Predicted to enable ATP binding activity and histidine-tRNA ligase activity. Acts upstream of or within regulation of vasculature development and sprouting angiogenesis. Located in mitochondrion. Is expressed in nervous system; optic cup; optic vesicle; and otic vesicle. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease, axonal type 2W; Perrault syndrome; and Usher syndrome type 3B. Orthologous to several human genes including HARS1 (histidyl-tRNA synthetase 1).

NR:

description
histidine--tRNA ligase, cytoplasmic-like isoform X2

GO: NA

KEGG:

id description
K01892 HARS, hisS; histidyl-tRNA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007253597.3 True 2184 mRNA 0.52 14 6293684 6315841
XM_007253598.3 False 1777 mRNA 0.52 13 6293684 6315832

Neighbor

gene id symbol gene type direction distance location
LOC103043333 LOC108442486,LOC108275354 coding downstream 71831 6161655 ~ 6221853 (-)
LOC103032061 LOC108436848,LOC107680293 coding downstream 256930 6012219 ~ 6036754 (-)
LOC103035351 ube2d2,UBE2D2,ube2d1,ube2d2l,LOC106611705,LOC105010898,LOC100695155 coding downstream 434314 5844641 ~ 5859370 (-)
LOC103036182 cxxc5b,LOC103036182,LOC108444528,LOC107758529,LOC108274782,LOC107589097 coding downstream 492960 5770787 ~ 5800724 (-)
trpc3 trpc7,LOC108435597,LOC107678610 coding downstream 697659 5531871 ~ 5596025 (-)
LOC103036141 LOC108430946 coding upstream 206216 6522057 ~ 6538782 (-)
LOC103027842 LOC108430992,LOC104947123,LOC107094991,LOC106517448,LOC103354384,LOC106905160,LOC108240514 coding upstream 254975 6570816 ~ 6583742 (-)
LOC103026932 NA coding upstream 269833 6585674 ~ 6593124 (-)
LOC103025929 adra2da,LOC108430987,LOC105904584,LOC107667592,LOC107757419 coding upstream 548183 6864024 ~ 6868262 (-)
LOC103025318 LOC108430942 coding upstream 633735 6949576 ~ 6956193 (-)
G71644 NA non-coding downstream 2172 6272251 ~ 6291512 (-)
G71636 NA non-coding downstream 115664 6153891 ~ 6178020 (-)
G71612 NA non-coding downstream 206573 6086839 ~ 6087111 (-)
G71577 NA non-coding downstream 325763 5954620 ~ 5967921 (-)
G71554 NA non-coding downstream 427156 5866305 ~ 5866528 (-)
G71646 trappc11 non-coding upstream 2388 6318229 ~ 6320682 (-)
G71659 NA non-coding upstream 33862 6349703 ~ 6350020 (-)
G71665 NA non-coding upstream 52915 6368756 ~ 6374213 (-)
G71675 LOC108430995,LOC108274926 non-coding upstream 139714 6455555 ~ 6459631 (-)
G71697 LOC108430994 non-coding upstream 177790 6493631 ~ 6498298 (-)
LOC103035656 LOC103035656,LOC108414340,LOC108274783 other downstream 451977 5829621 ~ 5841707 (-)
G71458 atp7a,LOC107554685,LOC107684827,LOC107745084,LOC107559604 other downstream 817309 5471666 ~ 5476375 (-)
trnaw-cca_42 NA other downstream 1369613 4924000 ~ 4924071 (-)
G71235 NA other downstream 1409196 4882170 ~ 4884488 (-)
G71175 NA other downstream 1880673 4411948 ~ 4413011 (-)
G71771 NA other upstream 461398 6777239 ~ 6824756 (-)
G71826 NA other upstream 741269 7057110 ~ 7057643 (-)
G71862 NA other upstream 993934 7309775 ~ 7312926 (-)
LOC103027657 LOC108430978 other upstream 1235344 7551185 ~ 7590554 (-)
LOC103030515 wu:fb13g09,LOC108441781,LOC108274673,LOC107554714,LOC107716370,LOC107677527 other upstream 1458054 7773895 ~ 7842280 (-)

Expression


Co-expression Network