LOC103031423


Basic Information

Item Value
gene id LOC103031423
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 6272216 ~ 6291384 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007253600.3
CAGAACGTCTGGCAGAGAAACTCCTAATTTAATGAGTTGAAGGAGAAGCTGGAATCAGTGAAGGAGCAAAAATGGAGGGAGTAGTTGTACAGgttctgAACCCACTTAGAGTGAGAGCTCTGGAAGAATGGCTGAAGACTACCTCCATCACTTTAACCCAGATCAACGGCCAGAGGAAATATGGCGGTCCTCCTCCTGACTGGAGAGGTCCTCATCCCGGTCCAGGCTGTGAGGTGTTTATCAGTCAGATTCCGCGGGATGTGTACGAGGATCAGCTGATCCCGCTGTTCCTGAGCGTGGCACCGCTCTATGAGTTTCGCCTCATGATGAACTTCAGTGGGCAGAACCGCGGCTTCGCGTACGCCAAGTACGGAACCCCTGCGGGCGCGACTGCTGCCATCCAGACCCTGAACCATTACCAACTGCAGGAGGGGGTGCGGCTGGTGGTCAGGAAGAGCACGGAGAAGAGGCAGCTGTGGCTGGCCGATCTGCCCGCCTCCATGGGCCGAGGGGAGCTGCTGATGGTCCTCCGGATGCTCTCAGATGGGGTTGAGGGAGCCACTATAAAGGCTGCTGGGCCCAAAGGAAAGGAGGTCTGTGCACTCGTCCACTACTCCTCTCACTACGCTGCTTCCATGGCCAAGAAGGTGCTGGTGCAAGGATTTAAGAAGCAGTTGGGCATCTGCATCTCCGTGCGATGGATGACCAGTGGCTCCAAGTCCAGGCAGGAGGAGCATCTTGACCAGAACCCCCTGAACCCTCCTGGTCTGAAACCTCCAGTTAAGCCTTCTCCACTGCCTCCCCGCTTCCAGATCAACCGCCCCACCCAGCTCTCCAATTATCTAGACCCTCTtcttcctactcctcctccttctcttcgtcctcctccacctccctctctttctcctttgaATGCTCTGCTTTCTCCACCTCCTCAGTATAAACAGCAGTTCCCACAGGCTGTTGGGAGTCCGGGCCCCCAGGTGAGAAATGGAATGGCACCTGTGACTGCAGTGAGGCCCTCTTTGTCATCCCATGATGCAGTGAGCCAGCTAAAGTGGCTTTGTGAGCTGTATGGAATTGGTGTGCCGCTGTATGACGTGCGCTACCACCACACAGGCCCTGATGGCTTCCTCCACTTCAACTACAGTGTCATTATCCCCCAGCTGCCCATCCCGCTGTGTGGGTCTGTTCAGGTTCTGCCCGGCCCCAGCATCTCCAGCATGGAGGAAGAGGTCCAGCGGGCCACTGCTGAGCAGGTCATCAAAACCATGTGTCAGCAGTCCTAAAGGTCGCGGCCCGCGTTTAATGCATTACCAGTTTTGTGTTCAGTATTGATCTCAGAAAGCATGTAGTGTTTGAATCAGAGATGGCTGAGATGGTTCAGTTCTTACTCAATTACctgatgttttgttttatcttttgatatgatgttttataatgttttaattagaaaaaatattatttgtgtgTTGTATCTTCGTTTGTACTGTTTGCACTTTTTTTCATATCAGCATGAGACctgattttctttgtgtttttgtttgcatgTGTTTGATTTCACACTTTTGAATTGACTGGTTTGGTTGTGGTTTGTTTTGTGtcgtgtttaaaaaaaaaa

Function

GO:

id name namespace
GO:2000145 regulation of cell motility biological_process
GO:0010628 positive regulation of gene expression biological_process
GO:0007275 multicellular organism development biological_process
GO:0007281 germ cell development biological_process
GO:0048255 mRNA stabilization biological_process
GO:0060965 negative regulation of gene silencing by miRNA biological_process
GO:0008354 germ cell migration biological_process
GO:0060047 heart contraction biological_process
GO:0043073 germ cell nucleus cellular_component
GO:0043186 P granule cellular_component
GO:0017091 AU-rich element binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003730 mRNA 3'-UTR binding molecular_function

KEGG:

id description
K24981 DND1; dead end 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007253600.3 True 1621 mRNA 0.51 5 6272216 6291384

Neighbor

gene id symbol gene type direction distance location
trnaa-agc_15 NA coding upstream 234468 6037676 ~ 6037748 (+)
trnaa-agc_14 NA coding upstream 235342 6036802 ~ 6036874 (+)
LOC103031741 NA coding upstream 260815 6008561 ~ 6011401 (+)
tmem173 NA coding upstream 284450 5962280 ~ 5987766 (+)
LOC103037091 NA coding upstream 540901 5696919 ~ 5731315 (+)
trappc11 trappc11,LOC107587085,LOC107731725,LOC107758539,LOC107559294 coding downstream 26936 6318320 ~ 6344698 (+)
LOC103029834 LOC108430996 coding downstream 62255 6353639 ~ 6372363 (+)
LOC103028894 stox2b,LOC108430995,LOC108274926,LOC107680916,LOC107758540 coding downstream 83165 6374549 ~ 6462450 (+)
LOC103043030 LOC108430994,LOC108274927 coding downstream 180794 6472178 ~ 6509018 (+)
LOC103042719 rbm22,LOC108430993,LOC102796909,LOC107758467 coding downstream 218577 6509961 ~ 6520471 (+)
G71613 NA non-coding upstream 114798 6153881 ~ 6157418 (+)
G71611 NA non-coding upstream 185229 6086574 ~ 6086987 (+)
G71608 brd8,LOC107758534 non-coding upstream 235557 6032185 ~ 6036659 (+)
G71567 NA non-coding upstream 254113 5966554 ~ 6018103 (+)
G71566 NA non-coding upstream 257834 6012222 ~ 6014382 (+)
G71628 NA non-coding downstream 53850 6345234 ~ 6345715 (+)
LOC111193077 NA non-coding downstream 348282 6639666 ~ 6662003 (+)
G71747 adra2da,LOC108430987,LOC105904584 non-coding downstream 575664 6867048 ~ 6868404 (+)
G71787 NA non-coding downstream 580764 6872148 ~ 6872364 (+)
G71808 NA non-coding downstream 761639 7053023 ~ 7053324 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other upstream 315197 5871090 ~ 5957019 (+)
LOC103037414 NA other upstream 593342 5672718 ~ 5678874 (+)
G71414 gstp1 other upstream 766578 5499908 ~ 5505638 (+)
G71247 NA other upstream 1292205 4956298 ~ 4980011 (+)
G71682 LOC108430946,LOC108416517 other downstream 234257 6525641 ~ 6538794 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other downstream 590203 6881587 ~ 6885541 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other downstream 2577744 8869128 ~ 9036026 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other downstream 2851515 9142899 ~ 9149419 (+)
LOC103043718 LOC103043718,LOC108442465 other downstream 3677122 9968506 ~ 9970042 (+)

Expression


Co-expression Network