LOC103031741


Basic Information

Item Value
gene id LOC103031741
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 6008561 ~ 6011401 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007253601.3
CGTTTAAATAGAGCGCGAGCGGATCGGAGCGGCGCAGAACGCTGCTGGGCTTCTAGAACGCACATGGAACGATCACAGACAGATCAAACGGAGGAGTTTCGCGGGAAAATAGAGTCAGAATGGTCTATAGCCAGGCTTTGGTGCTCGGGTACGGCCTGTCGGTCGGAGCTGAGGAGGATAACTTAGCAGATCTGCTGAAGAAGTTCTTCAGGCTGGATAAGGAAGGCTGGGGAACCCGGAGTACACTAACTAAAGCCACCAGCTCATCCAGTCTTTCCTCTGAGAGTAGCTgggaggaggatgaggatgacATGGCCTGTCTGAAACTGGATTTGATCAAGCAAATTGAGAGCTGCTTGGTTTCTGCTAAGGCTGTAAGTCTGAGCTGCCGGGAGCTGCTTCTTCCGGCCGGGATGACCACACGGGTGGCTGGGGATCTGCTCCGGGCCTCTGGAGATGAGCCGTGCGGCCTGCGGGGCGCCGTCATCCACCTCTTCTTGGAAAACAAGAGCGGTGTGCAGAAACTGGGCACCATTACAGCCGACCAGAGCCTCACTCCAACCTTTGAGCTGTCTGTGGTGTTCAGGGAAGACCCTGACGGCTGGCCACCCCTCCGGCACCTGCTGGGGACTGAAGGAGCTGTGAGGCTAAGGGCCAAGTACAGGCTGATTAAGAGGAAGCTGTATTCCTCTGCTAGTCCGATTGTGATGGACTGTTGCTGATCTGGAGTCTACAAACGAGTTacaaaccactttttttttacatgttgtaTGATTTTGCACGTagctgtttagtttattaactATATATTAGGACTTCTGCTGATAGGAAGTCAAATCTAGTAACGGCTAAGAAAAAGgaaatgatttattttgactGATTTAGGAGGTAGGAAAATGGAGTTACATGCCTTTTTGCACATTTCTGCTGGGTTAATTTAATATATGTCCTATGTATAGACTACTGATGAGAACCTACACTACTATAGCGTACAACTTTAACACACCTGAACTAATGAACCTAACGGTTGCATTTCAGGGCTGCGTTTCCAAATCTAGGCTgcaatatatagaaataaaagcacacttttttttttaagcagatcACCACAAAGCCCTGTTAGTCTGTTCCTAATATGAGACTAATGGGCTACAGAGAAAAAGTCATCATATGACCTCAACTGCAACCAGTACAGATGTTTTGCTGTAGCCTGGGACAGTGCAATAGTTCAGACTCACCCAGGGCTTCAGAGGACAAATTTAGGAACCACTGCTACATAGAACCCAAGCTGAGAACCACTGGTAAAAGAATGATGAATGTAGGAATTGAATTTGTATCATATGTTTAAGCAAGGATATTTTACAATGCATTTTGCACATTGTTGTTTAAGTCAGTGTATTTAGTTGTCTTATTTATGATGGAAATGAATGTACTTTGTTGGCCAACACTACTGTATTACTTTGTTTACAGTTTGAAATGTTCACGtggagttgttgttgttgttgtttgtttatggaGACTGGAAGACatctgtatttaattatttaacatttgtGGGAATGTCAAAGTTGCGGAGGTAAGCTGGACTTGTCTCCAAATAACAATGTTTTCTACTTGTCAGTATTTTCTAAgcctaataaaaaatactaaaatga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007253601.3 True 1655 mRNA 0.44 2 6008561 6011401

Neighbor

gene id symbol gene type direction distance location
tmem173 NA coding upstream 20795 5962280 ~ 5987766 (+)
LOC103037091 NA coding upstream 277246 5696919 ~ 5731315 (+)
LOC103044251 NA coding upstream 513997 5491422 ~ 5494564 (+)
LOC103038898 NA coding upstream 523397 5480388 ~ 5485164 (+)
atp7a atp7a,LOC101485317 coding upstream 532130 5430689 ~ 5476431 (+)
trnaa-agc_14 NA coding downstream 25401 6036802 ~ 6036874 (+)
trnaa-agc_15 NA coding downstream 26275 6037676 ~ 6037748 (+)
LOC103031423 NA coding downstream 260815 6272216 ~ 6291384 (+)
trappc11 trappc11,LOC107587085,LOC107731725,LOC107758539,LOC107559294 coding downstream 306919 6318320 ~ 6344698 (+)
LOC103029834 LOC108430996 coding downstream 342238 6353639 ~ 6372363 (+)
G71518 ube2d2,UBE2D2,ube2d1,ube2d2l,LOC106611705,LOC105010898,LOC100695155 non-coding upstream 149197 5800403 ~ 5859364 (+)
G71528 LOC103035656,LOC108414340,LOC108274783 non-coding upstream 166858 5828888 ~ 5841703 (+)
G71527 NA non-coding upstream 179739 5824434 ~ 5828822 (+)
G71490 NA non-coding upstream 400615 5607718 ~ 5607946 (+)
G71489 NA non-coding upstream 405240 5603120 ~ 5603321 (+)
G71566 NA non-coding downstream 821 6012222 ~ 6014382 (+)
G71608 brd8,LOC107758534 non-coding downstream 20784 6032185 ~ 6036659 (+)
G71611 NA non-coding downstream 75173 6086574 ~ 6086987 (+)
G71613 NA non-coding downstream 142480 6153881 ~ 6157418 (+)
G71628 NA non-coding downstream 333833 6345234 ~ 6345715 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other upstream 51542 5871090 ~ 5957019 (+)
LOC103037414 NA other upstream 329687 5672718 ~ 5678874 (+)
G71414 gstp1 other upstream 502923 5499908 ~ 5505638 (+)
G71247 NA other upstream 1028550 4956298 ~ 4980011 (+)
G71682 LOC108430946,LOC108416517 other downstream 514240 6525641 ~ 6538794 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other downstream 870186 6881587 ~ 6885541 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other downstream 2857727 8869128 ~ 9036026 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other downstream 3131498 9142899 ~ 9149419 (+)
LOC103043718 LOC103043718,LOC108442465 other downstream 3957105 9968506 ~ 9970042 (+)

Expression


Co-expression Network