LOC103038898


Basic Information

Item Value
gene id LOC103038898
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 5480388 ~ 5485164 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007253628.3
tctgagctgTGGGAAACGGAGCAGCTTGTCGGTGGCGCGCATGCCCGGGCTGAATGCGGTGCGCGTTCACGCGGACAGAGGGGGCATTAGAGAGGGGGGAGGTAAGTTTTGTTGAGTTTGAGGGAGAAAAACATCTCAGCGCGGTGTGAGAGAGCTCAGACAGAGCTCTCCTGCTGGACTGGAGCTTCTGCCTGGCTGCTCTGTGGATCAACAGGCGGGGGCAGGGTAAAGCATGGCCGTGTCTCAGGGGCTGATCCTCGCCTTCCTGCTGGAGCGAGGAGGTCGGGTGAGGAACTCCGAGCTGCTGAACGCCTTCAGAGACTTCCTGAGCTCCAGCGAGCCCGCGGAGCGGAGGAGGAACCGCGACCTCTTCAAACACTTCGTCAACAACGTGGCTGTGGTCAAGCAGATCGATGATGTGAAGTACGTGGTGGTGAAGAAGAAGTACCAGGACCTGGTGCAGGGTGGAGGAGGAAGGGTGGAGACTGAGGAGagcagctgcagctccagcagctcatcaTCTCTACAGCCATCAGGCATCACCACCCAGCAGAGGACCAGCTTCTCCACACATTCCAGCTGCTGCATTGGCCATACCGAGAGCCTACCCAGGAAGATACAGCTCCAAAGGAGACGTTCTGAAGGTGCTGAACGTGCTGACAGTGGTGTGATCAGTTCTCGCGCCAAGCCCCCAACCAGCCTAGATGATTCCTACACTACTAGAGTGCTTAATGTGTCAAATACTGGGAAAACTGGCAAAACTGGGgctgtttttgctgttgttgCAATCAAATCACCACCACCCCCACATATGAGATGCATTTCAAGGAGTGATTCAAAGCGTGATTCAAAGCATGATTCAAGGTACAAAGTACCAAGTGATGATGACCATGCACTTCAGCAAGAGATCCCATTCCAGCACTTTCCGGctgaaaaagctgttttttcgAAGAGTATGTCACATCCGATTGATGGACATCAGTATCGATCATTAAGAAGCAAAAGGAGGCCATCATTGGTGTCCAGTTCACCAGCAACAAAACGGGGCACCAAAACAGGGTTCGATGCCAAGGAACAAGCTCCAGTTCCCCTGGAGCCGAGAGAGCACGAATGGCTTCTGAAGTCGGCCACCGGTCGGTGGGGTCAGGTGTCCAGCCTCCTGCTGCAGGATGTCCATCTAGCGGAGAAGAAAAGCTTTGTGTCAGGCTTCACAGTTCTCCACTGGGCTGCCAAGAAAGGCAACAGCAAGATAGTGCGCCAGATCCTTGATCTTTCCAAGCAAGGCGGCTTGGAGGTTGACGTAAACGCCAAGAGCCACGATGGCTACACACCCCTGCATGTTGCAGCTATTCACAACCATGTGTCAGTGCTAAACGTGCTGGTGCACAACTACGGAGCCAACTGCAACATCCGAGACAACAGTGGCAGAAAGGCCCATCAGTACCTGCCCAAAGATGTGTCAACTGATGTGAGGGAGATGCTCGGAGACCCTCACGTTTTTCATCGTTCAGGGCAGCGTCGGCACTCAGTTGATGATCAGCAGCTCTCGGACGTCTCCAAAGGGTTCCACTCATTCAGTAAGCTGTTCCAGCCCAGCACAGGGCACAAAAAGAAGCCTAGACACCGGCCAAGCTTCCACTTCATCAGCGATGACCACGACGAGAACAGAAAGGACTGTGGGACTTACAGCCGGAGACCATTGCACTAAATCTAAAGATAAATTGACCACTTACTACAGTAGATGCACTTAAATTTGACTGTTACTcattgtttattaatatatagtgttatttatagtataatttaattttaagtagTGAGAGAACTCACCCAGTTTCACCCAGATTGCGAGCAAGTTGCTGCTGTCCAGTGTCCAAAAACACTGtccatctccatttttgtcaatttttcttgttttaagcCTGTAGCTGTTGTACATGAACACTGCGTAAATAATTCTGGataatagaccaatagaaatgctcttcTTAAAACACCTAATCAAACTGTATTgtatttacttacatttaaagTTAGGAGCACTTTTCCTTTTCCTGTAAAGTCACCATTTGATGCATTTTGGAGATGCAAGTTTTTGATTAAACAGCATCAATGCATCAGTCTACTGGCTTGATAAGCTTAGCACTCACCTGACAGTTTTCCACTGCTGGCCCAACCTCAGACCACCCAGGTAACTTTATCATGCACtaacactatttttttattcctctgAAAACAAACAATTTTAAGTGCACAGAGACCTTTTTTAAGGCAAATATTACACACAACCAGTAGAATAAAATAGTCTGATCTGTATTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007253628.3 True 2320 mRNA 0.49 2 5480388 5485164

Neighbor

gene id symbol gene type direction distance location
atp7a atp7a,LOC101485317 coding upstream 3957 5430689 ~ 5476431 (+)
atp10b NA coding upstream 72373 5339650 ~ 5408015 (+)
gabrb2 gabrb2,LOC107554707,LOC107684828 coding upstream 166730 5182503 ~ 5313658 (+)
gabra6 gabra6,gabra6a,LOC107554706,LOC108275227,LOC107737791,LOC107684829 coding upstream 307132 5143765 ~ 5173256 (+)
ccng1 ccng1,LOC107745080 coding upstream 349831 5123954 ~ 5130557 (+)
LOC103044251 NA coding downstream 6258 5491422 ~ 5494564 (+)
LOC103037091 NA coding downstream 211755 5696919 ~ 5731315 (+)
tmem173 NA coding downstream 477116 5962280 ~ 5987766 (+)
LOC103031741 NA coding downstream 523397 6008561 ~ 6011401 (+)
trnaa-agc_14 NA coding downstream 551638 6036802 ~ 6036874 (+)
G71411 NA non-coding upstream 70075 5409031 ~ 5410313 (+)
G71397 NA non-coding upstream 155501 5323669 ~ 5324887 (+)
G71304 NA non-coding upstream 182067 5295678 ~ 5298321 (+)
G71294 NA non-coding upstream 273311 5205216 ~ 5207077 (+)
G71287 nudcd2 non-coding upstream 342821 5133735 ~ 5137567 (+)
G71473 NA non-coding downstream 42832 5527996 ~ 5532969 (+)
G71474 NA non-coding downstream 43291 5528455 ~ 5532295 (+)
G71489 NA non-coding downstream 117956 5603120 ~ 5603321 (+)
G71490 NA non-coding downstream 122554 5607718 ~ 5607946 (+)
G71518 ube2d2,UBE2D2,ube2d1,ube2d2l,LOC106611705,LOC105010898,LOC100695155 non-coding downstream 315239 5800403 ~ 5859364 (+)
G71247 NA other upstream 500377 4956298 ~ 4980011 (+)
G71249 NA other upstream 512481 4963702 ~ 4967907 (+)
atpif1 atpif1,LOC105912502,LOC107571275,LOC104922170,LOC107730904,LOC103378180 other upstream 558568 4915813 ~ 4921820 (+)
LOC103028288 LOC108435610,LOC108275213,LOC106520856 other upstream 1038457 4357065 ~ 4441931 (+)
LOC111193071 NA other upstream 1905630 3409670 ~ 3574758 (+)
G71414 gstp1 other downstream 14744 5499908 ~ 5505638 (+)
LOC103037414 NA other downstream 187554 5672718 ~ 5678874 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other downstream 385926 5871090 ~ 5957019 (+)
G71682 LOC108430946,LOC108416517 other downstream 1040477 6525641 ~ 6538794 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other downstream 1396423 6881587 ~ 6885541 (+)

Expression


Co-expression Network