ccng1 (ccng1,LOC107745080)


Basic Information

Item Value
gene id ccng1
gene name ccng1,LOC107745080
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 5123954 ~ 5130557 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007253631.3
AGGGCGGCCGCTCGGTCGCCTGAAACGCCGTGGGTTGGGGTGTGCAGGGCGGACGTTTTTAACACTGACTTTGAACATACGTACAGTTactttttcacttattttaagcttgtttaaacttttttttttttgctttttttaagcttcTGCGCTTTCATCTAAGCTAATACTTCAACTTAACAAGATGCTTGACAAAGTGACCGGATCAGAGGCCTTGCCTTTTGCTGTCCAGCTGAAGGGTCTTCTGGAGAAGGAGGCTCGTTACCAGCCCAAGCTTTGTGGCCTCCGCATCCTTGAGTCTGCCAATGACAACGGCCTCAGGATGACTGCCAAGCTGAGGGATTTTGAGGTGAAGGATCTGCTGTCTCTGACCCGGTTCTTCGGGTTCAGCGCAGAGACATTCTCCCTTGCAGTGAGCCTCCTGGATCGCTTTCTGGCTGCGATGAAGATTCAACCAAAGCATCTCTCCTGTGTTGGCCTCTGCTGCTTCTACATCGCAATAAAGACctcagaggaggagaagaatgTTCCTCTGGCAAATGATCTGATCCGTATCAGCCAGAACCGCTTCACAGTTTCAGATATGATGAGGATGGAAAAGATCATTTTGGAAAAGCTCTACTGGAAGGTCAGGGCACCCACAGCACTGCACTTCCTCAGGCTGTTTCACTCCCACATCCAGGAGAAGGTCGATGCTGACAGCAAGAAGATTCTGAACATCGACAGGCTTGAGGCTCAGCTGAAGGCCTGCCACTGCTCCTTCACCTTTACAAAAATGAAGCCTTCCTTGCTTGCCCTGGCTCTGCTAGCACTTGAGATTGAGGAGCAGCATGAATTTGAGTCTGTAGAAGCCTTGAGAGAGACTCTGCAGGAACTTCAGCATCAGCTTTCTATTAAAGATGGAGACTTGGCGTGTGTGAGGGAGCTGGTTGCCAAGTGCCTGATTGAGTATTCCACCACCAAGTGTTCAAAACCCAACGGCCAGAGGCTGCGCTGGGTCATCTCTGGTAGAACAGCCAGACAGTTGAAACACAGCTACTACAAGATCGCCCATCTGCCTACGATTCCTGAAACTGCCTCTTAAAGGTCTTGGTTAGCTGGCCATAATTCAGATGAAAGGTTGTGAATTGTGGCCCCCTAACGGTGCATTGGGTTTCCTTACAGAACTTCTGAGTGAAGATCTGTAAggaaatttaattaataattgctttttttgttttgttttaaactttcctccctttttttgctatttattttgtCTGCTTTGACTTTGGATATTCCAGGTCAAGGGTGGGTTTGATGGCAGTCGGCCAGTGAGGGTCTTTCTGACCAGCCTGGCTTTGACTAGCTTGCTCATGTACGTGTACAGTATGTTCATTTGAATCGGCGCTTTCACTGGTGCTGGTTATTTAAAGCAGTGAAGTATTGAACCACCTAGGTCCTCAGTCCACCATGTGGAAGAGGAGGGAGAAGGGTTTTGCGAATCATAAAATCAATGGAACCAAGAAATCGGGCCCAAAACCCTTAACTCCCACCCTAGGTTGCTGAACAGTCCAAAAAGCACACTCCTACCCAAGGTGAATTAAAAGATAGttaattttctttcatttcttacGTTAGGGAAGTTTGTTTCTGTGAGGTGATGAAACCGAATGATGCTTAAAACATGTAGGTTTTAATCTTGCTGAGTAACTTGGTCCTAACTGAAATGCTTCTTTATAACTAACAGTTAGCAAGTCATGTTTACATGGCTTTGTGAAACTACAAACTTTGCAGGGTCCaaattgctttaaaaatgaTGCCACCTTTTTTTGACTGTGCAAGTCTTCCCCCTCTCTGTCTTAGGTTTTCTGGAGTAATGAAATGTTAGAAGGCTTGTACTAGAACCCCATTTATTTTGCTACTAATTGAATAATAACATACCCTGTAAACAAAGTTGGACCTTTCAATAAAACGTTATTGAAATGCTA

Function

symbol description
ccng1 Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity. Predicted to be involved in mitotic cell cycle phase transition and regulation of cyclin-dependent protein serine/threonine kinase activity. Predicted to act upstream of or within regulation of cell cycle. Predicted to be part of cyclin-dependent protein kinase holoenzyme complex. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including digestive system; immature eye; male organism; musculature system; and nervous system. Orthologous to human CCNG1 (cyclin G1).

NR:

description
PREDICTED: cyclin-G1

GO: NA

KEGG:

id description
K10145 CCNG1; cyclin G1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007253631.3 True 1970 mRNA 0.45 6 5123954 5130557

Neighbor

gene id symbol gene type direction distance location
LOC103040455 sept8,LOC108435605,LOC103023804 coding upstream 6115 5091878 ~ 5117839 (+)
LOC103041177 sfxn1,LOC108435595,LOC108275306,LOC107668583,LOC107749734 coding upstream 41348 5068901 ~ 5082606 (+)
cfap69 cfap69 coding upstream 56447 5048506 ~ 5067507 (+)
LOC111193046 NA coding upstream 143932 4979467 ~ 4980022 (+)
LOC111193076 NA coding upstream 166928 4956279 ~ 4957026 (+)
gabra6 gabra6,gabra6a,LOC107554706,LOC108275227,LOC107737791,LOC107684829 coding downstream 13208 5143765 ~ 5173256 (+)
gabrb2 gabrb2,LOC107554707,LOC107684828 coding downstream 51946 5182503 ~ 5313658 (+)
atp10b NA coding downstream 209093 5339650 ~ 5408015 (+)
atp7a atp7a,LOC101485317 coding downstream 300132 5430689 ~ 5476431 (+)
LOC103038898 NA coding downstream 349831 5480388 ~ 5485164 (+)
G71260 NA non-coding upstream 80196 5001091 ~ 5043758 (+)
G71248 NA non-coding upstream 117729 4958156 ~ 5006225 (+)
G71256 NA non-coding upstream 130775 4990852 ~ 4993179 (+)
G71246 NA non-coding upstream 155035 4963971 ~ 4968919 (+)
G71244 NA non-coding upstream 181837 4941409 ~ 4942117 (+)
G71287 nudcd2 non-coding downstream 3178 5133735 ~ 5137567 (+)
G71294 NA non-coding downstream 74659 5205216 ~ 5207077 (+)
G71304 NA non-coding downstream 165121 5295678 ~ 5298321 (+)
G71397 NA non-coding downstream 193112 5323669 ~ 5324887 (+)
G71411 NA non-coding downstream 278474 5409031 ~ 5410313 (+)
G71247 NA other upstream 143943 4956298 ~ 4980011 (+)
G71249 NA other upstream 156047 4963702 ~ 4967907 (+)
atpif1 atpif1,LOC105912502,LOC107571275,LOC104922170,LOC107730904,LOC103378180 other upstream 202134 4915813 ~ 4921820 (+)
LOC103028288 LOC108435610,LOC108275213,LOC106520856 other upstream 682023 4357065 ~ 4441931 (+)
LOC111193071 NA other upstream 1549196 3409670 ~ 3574758 (+)
G71414 gstp1 other downstream 369351 5499908 ~ 5505638 (+)
LOC103037414 NA other downstream 542161 5672718 ~ 5678874 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other downstream 740533 5871090 ~ 5957019 (+)
G71682 LOC108430946,LOC108416517 other downstream 1395084 6525641 ~ 6538794 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other downstream 1751030 6881587 ~ 6885541 (+)

Expression


Co-expression Network