nudcd2 (nudcd2)


Basic Information

Item Value
gene id nudcd2
gene name nudcd2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 5130602 ~ 5137613 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007253632.3
GAGCTCCAGCTCtgcagaatcagaatcagagagagagagctgctaaTAGAAACTGCAGGAATGTAGGAGAAGATTGAgagatcagttcagttcagtatcAGCGTTCCTCTGCTGTTATTCTTCAGCTGTAGGTCTCCTCTGCTTTTTTATTAGATCAGATCAGAGCTGGTTACACTACAGCACAGGGTTCAGTCTGTTAGCCCGGCCAGGCTGCAGTAACTATAACACTAGCCCAGCTAACTACAGTAATAACACAGCATGTCGGTGCATTTCGAGGAGAGGAGCGGGGTCATCCCCTGTAAAACCCCCTGGGGCTCCTGGTATCAGACCATGGAGGAGATCTTCATCGAGATAAATGTCCCTCCTGGAACATCCAGTAAAGAAATCAGGTGTAAACTGGGGAGCAGAGAGGTGGAGCTGAGTGTGAGAGGACAGGAGATATTTAAGGGAAAGCTGTTTGGAACAACAGTGGGAGACGAGGCGACGTGGACATTAGAAGACAAAAAGCTGATCAGGATAGTTCTGATGAAGACGAACCGGGAGGCTGGAAACTGCTGGGCTTCGCTGCTAGAGGGCCAGTACGCTGCAGATCCATGGGTGCAGGACCAGATGCAGAGAAAACTCACACTAGAGAGGTTCCAGAGAGAGAATCCAGGATTTGACTTCAGTGGTGCAGAAATCTCTGGAAACTTCCATGGTGGTGGACCAGATTTCTCCAGTTTGCAGAAATAAAGCTGCAGTGCTCCAGAAGAGCATGAGGACTTTAAACTGACAGACATTTTGTGGGTTGTTTTGTTCAGTGGGGACAACTTGTTTTTCTTCCTCCCATTGTTGAACTAACTAACGACTAACTCACAAGAAGCCTTTGAGTCAGAGTTGTTTCTTTAGGTTTACAGATGCTATTATTTTTCAGCGAGATGCTGTAATGCCATAGTTTGAACTGTGGacataatttgtaataaatgaTTTGTTCAGGTTAAGCAGAA

Function

symbol description
nudcd2 Predicted to enable unfolded protein binding activity. Predicted to be involved in protein folding. Predicted to be active in cytoplasm. Orthologous to human NUDCD2 (NudC domain containing 2).

NR:

description
nudC domain-containing protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007253632.3 True 986 mRNA 0.46 4 5130602 5137613

Neighbor

gene id symbol gene type direction distance location
kdm1b kdm1b coding downstream 84465 5014872 ~ 5046137 (-)
LOC103041488 NA coding downstream 116735 4958105 ~ 5013867 (-)
LOC111193075 NA coding downstream 154977 4961589 ~ 4975625 (-)
LOC103026470 LOC108435611 coding downstream 667630 4447172 ~ 4462972 (-)
LOC103042532 LOC108442489 coding downstream 1220073 3862118 ~ 3910529 (-)
LOC103044536 LOC108435599,LOC564855,LOC107684857,LOC103391210,LOC103359223 coding upstream 274103 5411716 ~ 5422882 (-)
gstp1 gstp1 coding upstream 362402 5500015 ~ 5511729 (-)
trpc3 trpc7,LOC108435597,LOC107678610 coding upstream 394258 5531871 ~ 5596025 (-)
LOC103036182 cxxc5b,LOC103036182,LOC108444528,LOC107758529,LOC108274782,LOC107589097 coding upstream 633174 5770787 ~ 5800724 (-)
LOC103035351 ube2d2,UBE2D2,ube2d1,ube2d2l,LOC106611705,LOC105010898,LOC100695155 coding upstream 707028 5844641 ~ 5859370 (-)
G71328 NA non-coding downstream 41141 5028568 ~ 5089461 (-)
G71338 sfxn1,LOC108275306,LOC108240619,LOC106517750 non-coding downstream 54997 5068899 ~ 5075605 (-)
G71322 NA non-coding downstream 86844 5001076 ~ 5043758 (-)
G71327 NA non-coding downstream 109921 5019052 ~ 5020681 (-)
G71325 NA non-coding downstream 137473 4990921 ~ 4993129 (-)
G71361 NA non-coding upstream 19005 5156618 ~ 5230814 (-)
G71396 NA non-coding upstream 185731 5323344 ~ 5323642 (-)
G71464 gdf9 non-coding upstream 352750 5490363 ~ 5491941 (-)
G71472 NA non-coding upstream 390046 5527659 ~ 5527874 (-)
G71488 NA non-coding upstream 462101 5599714 ~ 5599952 (-)
trnaw-cca_42 NA other downstream 206531 4924000 ~ 4924071 (-)
G71235 NA other downstream 246114 4882170 ~ 4884488 (-)
G71175 NA other downstream 717591 4411948 ~ 4413011 (-)
LOC103042226 LOC108274609,LOC107701883,LOC100536156,LOC107747745,LOC107574915,LOC108442488 other downstream 1281978 3736626 ~ 3848624 (-)
LOC103023864 NA other downstream 1426851 3575561 ~ 3703751 (-)
G71458 atp7a,LOC107554685,LOC107684827,LOC107745084,LOC107559604 other upstream 334053 5471666 ~ 5476375 (-)
LOC103035656 LOC103035656,LOC108414340,LOC108274783 other upstream 692008 5829621 ~ 5841707 (-)
G71771 NA other upstream 1639626 6777239 ~ 6824756 (-)
G71826 NA other upstream 1919497 7057110 ~ 7057643 (-)
G71862 NA other upstream 2172162 7309775 ~ 7312926 (-)

Expression


Co-expression Network